HHsearch alignment for GI: 254780602 and conserved domain: PRK12566

Probab=98.43  E-value=5.8e-07  Score=62.47  Aligned_cols=208  Identities=15%  Similarity=0.205  Sum_probs=116.4

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf             972665658974988999999999998388756998---778989999999986421013333223323345433332--
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTA---VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF--  105 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~--  105 (400)
T Consensus       500 ~sMIPLGSCTMKLNAtsEM~PiswPeF-a~iHPfaP~~Q~~Gy~~l~~~L~~~L~~iTG~~--~vslQPnaGaqGE~aGl  576 (954)
T PRK12566        500 QAMIPLGSCTMKLNATSEMIPITWPEF-AQLHPFAPREQAEGYKAMIDELEAWLCAITGFD--AICMQPNSGAQGEYAGL  576 (954)
T ss_pred             HCCCCCCCEEEECCCHHHHHHHCCHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CEECCCCCCCCHHHHHH
T ss_conf             325106620230382565211063867-437999997899999999999999999866856--04257787751068999


Q ss_pred             CCCCCCC-CCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CCCCCEEECCCCCCC
Q ss_conf             2222223-322----32222333323222222222222222222222322210333100012---212201211354210
Q gi|254780602|r  106 NALMATV-NMG----DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT---PKTKWLFLNSPSNPS  177 (400)
Q Consensus       106 ~~~~~~~-~~G----d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~k~i~l~nP~NPT  177 (400)
T Consensus       577 ~~ir~yh~~~g~~~R~icLIP~SAHGTNPASA~maG~~Vv~v~~~~~G~--iD~~dL~~k~~~~~~~laa~MiTyPs--T  652 (954)
T PRK12566        577 LAIRRYHESRGQSQRDICLIPASAHGTNPASAQMAGMRVVIVECDNDGN--VDLDDLKAKAAEAGDRLSCLMITYPS--T  652 (954)
T ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEEEECCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCC--C
T ss_conf             9999999974998883799678988889778976696689960189998--48999999999726654434300676--4


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CCC-CCEEEEECCCCCCCCCC----CCCCCCC
Q ss_conf             00012333321112233333201110122110000012233222111-233-32257414654432234----4544422
Q gi|254780602|r  178 GVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVE-PSL-YERTLVVNGVSKAYAMT----GLRIGYA  251 (400)
Q Consensus       178 G~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~-~~~-~~~~i~~~S~SK~~~~~----G~RiG~~  251 (400)
T Consensus       653 ~Gvf-E~~i~ei~~~v-H~~GGqvY~---------DGANmNA~vG~~~Pg~~G~Dv~HlN-LHKTF~iPHGGGGPG~GPi  720 (954)
T PRK12566        653 HGVY-EEGIREICEVV-HQHGGQVYM---------DGANLNAQVGLARPADIGADVSHMN-LHKTFCIPHGGGGPGMGPI  720 (954)
T ss_pred             CCCH-HHHHHHHHHHH-HHHCCEEEE---------CCCCHHHHHCCCCCCCCCCCCEEEE-CHHCCCCCCCCCCCCCCCE
T ss_conf             5122-55599999999-970988985---------4632232414457200367602320-0220368878888987766


Q ss_pred             CCHHHH
Q ss_conf             110122
Q gi|254780602|r  252 AGALSL  257 (400)
Q Consensus       252 v~~~~l  257 (400)
T Consensus       721 ~v~~hL  726 (954)
T PRK12566        721 GVRAHL  726 (954)
T ss_pred             EEHHHC
T ss_conf             664231