HHsearch alignment for GI: 254780602 and conserved domain: TIGR00700
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632 Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=98.67 E-value=6.2e-08 Score=68.36 Aligned_cols=346 Identities=15% Similarity=0.147 Sum_probs=184.3
Q ss_pred CCCCEEECCCCC--CCC-CCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 699726656589--749-8899999999999838-875699877898999999998642101333322332334543333
Q gi|254780602|r 29 KGIDVLCLTAGE--PDF-DMPENVKYAVVRAMER-GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI 104 (400)
Q Consensus 29 ~g~~ii~l~~G~--p~~-~~p~~i~~a~~~al~~-~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l 104 (400)
T Consensus 31 dGnr~IDfa~gIavln~GhshP~vV~AV~~Q~~ef~Ht~f~v~p-Ye~Yv-~lAEkln~iaPgSg~kk~~ffnsGA-EAV 107 (427)
T TIGR00700 31 DGNRYIDFAAGIAVLNVGHSHPKVVEAVKRQVEEFTHTAFQVVP-YESYV-ELAEKLNAIAPGSGEKKAVFFNSGA-EAV 107 (427)
T ss_pred CCCEEEHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEC-CHHHH-HHHHHHCCCCCCCCCHHEEEECCCH-HHH
T ss_conf 77521000110232036898735899999999974388534521-62589-9999971578897310002111543-788
Q ss_pred CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCC---------CCCCC-CHHHHH
Q ss_conf 2222---22233223222233332322222222222--------------222222222---------23222-103331
Q gi|254780602|r 105 FNAL---MATVNMGDEVLIPRPYWVSYPDMVALCGG--------------IPVFVDTQQ---------DDNFQ-VSPEKL 157 (400)
Q Consensus 105 ~~~~---~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~--------------~~~~v~~~~---------~~~~~-~d~~~l 157 (400)
T Consensus 108 ENAVKIAR~yTgr-pgVvaF~~gfHGRTnmTMalT~Kv~PYK~GFGPFapevY~aP~py~y~~~~~~~q~s~d~m~~~A~ 186 (427)
T TIGR00700 108 ENAVKIARKYTGR-PGVVAFDRGFHGRTNMTMALTAKVKPYKIGFGPFAPEVYRAPYPYDYRDIALDKQESLDDMVLAAI 186 (427)
T ss_pred HHHHHHHHHHCCC-CCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8899999874589-616863687466126788765227873457888674521168872002433442222003899999
Q ss_pred HCC------CCCCCCCEEECCC-CCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC----CCCCCCCCC
Q ss_conf 000------1221220121135-421000012-3333211122333332011101221100000122----332221112
Q gi|254780602|r 158 EQA------ITPKTKWLFLNSP-SNPSGVVYS-QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ----FSNIVNVEP 225 (400)
Q Consensus 158 ~~~------i~~~~k~i~l~nP-~NPTG~v~s-~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~----~~s~~~~~~ 225 (400)
T Consensus 187 ~~~f~~dkqv~a~~vAa~v~EPvQGEGGFivp~k~fv~a~~~~C-~ehgiVfiADEvQtGFARTG~~FA~eH~~~dGl~P 265 (427)
T TIGR00700 187 EALFVADKQVEAENVAAVVIEPVQGEGGFIVPAKEFVAAVLDLC-KEHGIVFIADEVQTGFARTGKLFAIEHYDDDGLKP 265 (427)
T ss_pred HHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH-HHCCEEEEECCCCCCCCHHCCCEEEEECCCCCCCC
T ss_conf 98312103325010437897322478873338588999999975-43875899725456800002112541006788875
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 3332257414654432234454442211012268753100122233222222222222346--76432222221100000
Q gi|254780602|r 226 SLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNG--PQDFVVNNRKIFEYRRD 303 (400)
Q Consensus 226 ~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~ 303 (400)
T Consensus 266 D-----L--it~aKslA-~GlPLSgV~GrAeimdApapGgLGGTyaGnPlacAAAlAvl~iIe~egL~ERa~qig~~~~d 337 (427)
T TIGR00700 266 D-----L--ITVAKSLA-DGLPLSGVVGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLDIIEEEGLIERAEQIGKLVKD 337 (427)
T ss_pred C-----H--HHHHHHHH-CCCCCCHHHCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 1-----8--87866773-56862111044121168888888775568879999999999863113124789998788988
Q ss_pred CHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH---HHHCCEEEECCCCCCCCCEEEEE--E
Q ss_conf 002455304776033027408998626410233211332248989999999---98739799835022899728999--6
Q gi|254780602|r 304 LCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL---LEIEKVAVVQGSSFGHGPSIRIS--Y 378 (400)
Q Consensus 304 ~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---l~~~gV~v~pG~~Fg~~~~iRis--~ 378 (400)
T Consensus 338 ~l~~~k~~~p~IgdvRglGaMiA-vE~vkdp~T-------~EPda~~a~~ia~~A~a~GlllLTcG~~G--NiIRfL~PL 407 (427)
T TIGR00700 338 KLIELKEEVPAIGDVRGLGAMIA-VELVKDPDT-------TEPDAALAEKIAAAALAAGLLLLTCGIYG--NIIRFLTPL 407 (427)
T ss_pred HHHHHHHHCCCHHHHHCCCCEEE-EEEECCCCC-------CCCCHHHHHHHHHHHHHCCHHHHHCCHHC--CHHHHCCCC
T ss_conf 88888760672111202633578-886548878-------88317999999999975682212303011--555434886
Q ss_pred ECCHHHHHHHHHHHHHHHH
Q ss_conf 2999999999999999998
Q gi|254780602|r 379 AVSDAILEEACVRIKRFCH 397 (400)
Q Consensus 379 ~~~~e~l~~al~rl~~~l~ 397 (400)
T Consensus 408 tI~D~ll~egl~Il~a~L~ 426 (427)
T TIGR00700 408 TISDELLDEGLDILEAALA 426 (427)
T ss_pred CCCHHHHHHHHHHHHHHHC
T ss_conf 5467889889999999852