HHsearch alignment for GI: 254780602 and conserved domain: TIGR00713
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=99.45 E-value=1.5e-13 Score=102.67 Aligned_cols=345 Identities=18% Similarity=0.206 Sum_probs=200.0
Q ss_pred HCCCCEEECCC--CCCCCC-CCHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 86997266565--897498-8999999999998388756998-7789899999999864210133332233233454333
Q gi|254780602|r 28 SKGIDVLCLTA--GEPDFD-MPENVKYAVVRAMERGETKYTA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV 103 (400)
Q Consensus 28 ~~g~~ii~l~~--G~p~~~-~p~~i~~a~~~al~~~~~~Y~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~ 103 (400)
T Consensus 45 vDG~~YIDyv~swGPLILGHahp~v~~Av~e~lerG~-syG~PtE~Ei~lA~~i~~~v~~-----~t~e~vRfVnSGTEA 118 (434)
T TIGR00713 45 VDGNEYIDYVLSWGPLILGHAHPKVVEAVKEALERGT-SYGAPTEAEILLAKEIISRVPS-----VTEEMVRFVNSGTEA 118 (434)
T ss_pred CCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHCCC-----CCCCEEEEECCCCHH
T ss_conf 3888001211000020117897689999999997301-2689988999999999864055-----546516862176488
Q ss_pred CCCCC---CCCCCCCCCCCCCCCCCCCCCCCC-CC--CCCCCC---CCCCCCC-------CCCC---CHHHHHHCCCCC-
Q ss_conf 32222---222332232222333323222222-22--222222---2222222-------3222---103331000122-
Q gi|254780602|r 104 IFNAL---MATVNMGDEVLIPRPYWVSYPDMV-AL--CGGIPV---FVDTQQD-------DNFQ---VSPEKLEQAITP- 163 (400)
Q Consensus 104 l~~~~---~~~~~~Gd~Vlv~~P~y~~y~~~~-~~--~g~~~~---~v~~~~~-------~~~~---~d~~~l~~~i~~- 163 (400)
T Consensus 119 TMsAvRLARG~TGR-~~IiKFeGcYHGh~D~lLv~AGSGaaT~g~CG~P~SpGvP~~~~k~Tl~~PYND~~a~~~~f~~~ 197 (434)
T TIGR00713 119 TMSAVRLARGFTGR-DKIIKFEGCYHGHHDALLVKAGSGAATLGSCGLPTSPGVPEDFAKLTLVLPYNDLEALEEAFEEY 197 (434)
T ss_pred HHHHHHHHHHCCCC-CCEEEECCCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf 99999986310588-72788617641012320035452101046887788888701143113404517389999999867
Q ss_pred --CCCCEEEC-CCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf --12201211-354210000123-33321112233333201110122110000012233222111233322574146544
Q gi|254780602|r 164 --KTKWLFLN-SPSNPSGVVYSQ-NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK 239 (400)
Q Consensus 164 --~~k~i~l~-nP~NPTG~v~s~-~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK 239 (400)
T Consensus 198 G~~iAgvIvEPv~GN-mGvvpP~~eFL~~Lr~lt-~e~g~LLI~DEV~TGFRva~~GAQ~yfgV~PD-----l~~--lGK 268 (434)
T TIGR00713 198 GEEIAGVIVEPVAGN-MGVVPPKKEFLEGLRELT-EEYGALLIFDEVITGFRVALGGAQEYFGVEPD-----LTT--LGK 268 (434)
T ss_pred CCCEEEEEECCCCCC-CCCCCCCCCHHHHHHHHH-HHHCCEEEEECCCCHHHCCHHHCCHHCCCCCC-----CEE--ECH
T ss_conf 983437886120257-666488522358999999-87295775502210122133215011378741-----034--233
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 322344544422110122687531---0012223322222222222234676---4322222211000000024553047
Q gi|254780602|r 240 AYAMTGLRIGYAAGALSLIKSMIV---LQGQQTSGACSIAQWAAVEALNGPQ---DFVVNNRKIFEYRRDLCVAQLQGVP 313 (400)
Q Consensus 240 ~~~~~G~RiG~~v~~~~li~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~r~~~~~~L~~~~ 313 (400)
T Consensus 269 I~G-GGlP~gA~gGrrEiM~~laP~G~vYQAGTlsGNPlam~AG~atLk~~~~~~~~Y~~l~~~~~~L~~g~~e~l~~-~ 346 (434)
T TIGR00713 269 IIG-GGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEKGVYTELDELAKRLAEGLSEVLED-K 346 (434)
T ss_pred HHC-CCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-C
T ss_conf 233-76451012267568843178877445643555889999999999985348883489999999999999999982-7
Q ss_pred CCEE-EECCCCEE-EEEE-CCCCCCCCCCCCCCCCCHH----HHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHH
Q ss_conf 7603-30274089-9862-6410233211332248989----99999998739799835022899728999629999999
Q gi|254780602|r 314 GIRY-MIPDGAFY-LYPS-CQDLIGKKSPSGDVIRTDL----DFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILE 386 (400)
Q Consensus 314 g~~~-~~p~g~~y-~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~ 386 (400)
T Consensus 347 gip~~~~~~gSMf~~FFtd~~~V~ny~----~A~~SD~e~F~~Ff~~mL~~-GVylpP-S~F--Ea~F-~S~AH~~E~i~ 417 (434)
T TIGR00713 347 GIPHTVNRVGSMFSLFFTDEEEVTNYA----DAKKSDTELFAKFFHEMLEK-GVYLPP-SQF--EACF-ISAAHTEEDIE 417 (434)
T ss_pred CCCEEEEECCCEEEEEECCCCCCCCHH----HHHHHHHHHHHHHHHHHHHC-CCCCCC-CCH--HHHH-HCCCCCHHHHH
T ss_conf 985899504400456657788987889----99886189889999999858-887898-721--1555-16777721178
Q ss_pred ----HHHHHHHHHHHHC
Q ss_conf ----9999999999860
Q gi|254780602|r 387 ----EACVRIKRFCHSL 399 (400)
Q Consensus 387 ----~al~rl~~~l~~l 399 (400)
T Consensus 418 yaq~~ti~a~~~~f~~~ 434 (434)
T TIGR00713 418 YAQTNTIEAAEEVFAEL 434 (434)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999998409