HHsearch alignment for GI: 254780602 and conserved domain: TIGR01976
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein; InterPro: IPR011340 This entry describes probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. The most closely related characterised proteins are active as cysteine desulphurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown..
Probab=99.69 E-value=5.9e-17 Score=123.31 Aligned_cols=330 Identities=19% Similarity=0.245 Sum_probs=215.6
Q ss_pred CCCCEEECCCCCC-CCCCCHHHHHHHHHHHHCCC---CCCCCCCC------CHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 6997266565897-49889999999999983887---56998778------98999999998642101333322332334
Q gi|254780602|r 29 KGIDVLCLTAGEP-DFDMPENVKYAVVRAMERGE---TKYTAVAG------ISPLREAIVEKFRRDNDLHYTSDQIIVGT 98 (400)
Q Consensus 29 ~g~~ii~l~~G~p-~~~~p~~i~~a~~~al~~~~---~~Y~~~~G------~~~lR~aia~~~~~~~g~~~~~e~I~it~ 98 (400)
T Consensus 18 ~~~~~~~~Dn--pAG~q~Pq~V~dAv~~~L~~~~A~~gg~~~~~G~~~~~~vd~AR~a~A~LlnA-----~~Pe~vv~G~ 90 (410)
T TIGR01976 18 KDKDVVFFDN--PAGTQIPQSVLDAVSAALTRSNANRGGAYESSGRKADQVVDDAREAVADLLNA-----ESPEEVVFGA 90 (410)
T ss_pred CCCCEEEEEC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCCEEECC
T ss_conf 8973689757--88887773479999999874130137677663068999999999999997267-----9888567678
Q ss_pred CCCCCCCCCCCCC---CCCCCCCCCCCCC-CC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEC
Q ss_conf 5433332222222---3322322223333-23---222222222222222222222322210333100012212201211
Q gi|254780602|r 99 GAKHVIFNALMAT---VNMGDEVLIPRPY-WV---SYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLN 171 (400)
Q Consensus 99 G~~~~l~~~~~~~---~~~Gd~Vlv~~P~-y~---~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~ 171 (400)
T Consensus 91 ~~T~L~~~ls~a~~~~~~~GDEvivt~LDHeaNispW~~~a~~~Ga~Vkw~~~d~~~-~~L~~~~L~~Lls~rTRLVAvt 169 (410)
T TIGR01976 91 NATSLAYLLSRALSRRWGPGDEVIVTRLDHEANISPWLQAAEDAGAKVKWARVDEAD-GELHPDDLASLLSPRTRLVAVT 169 (410)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCC-CCCCHHHHHCCCCCCHHHHHHH
T ss_conf 668999999999851268985589716766001368999998389789996336231-5448699823668822555623
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 35421000012333321112233333201110122110000012233222111233322574146544322344544422
Q gi|254780602|r 172 SPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA 251 (400)
Q Consensus 172 nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~ 251 (400)
T Consensus 170 ~ASn~~Gs~~---dl~A~~~~-vh~aGA~v~VDaVh----yaPH~L~Dvqa~-----gaD~l~cSaYK~fG-P--H~G~l 233 (410)
T TIGR01976 170 AASNLLGSIV---DLAALTEL-VHAAGALVYVDAVH----YAPHGLIDVQAL-----GADFLVCSAYKFFG-P--HLGIL 233 (410)
T ss_pred HHHCCCCCHH---HHHHHHHH-HHHCCCEEEECHHH----HCCCCCCCHHHH-----CCCEEEECCEECCC-C--CEEEE
T ss_conf 4402325511---58899999-98759879881110----045666413422-----78879985631168-8--50178
Q ss_pred CCHHHHHHHHHHHCCCCC---------CCCCCCCC----CCCCCCCCCCC-----C----CC-------CCCCCCCCCCC
Q ss_conf 110122687531001222---------33222222----22222234676-----4----32-------22222110000
Q gi|254780602|r 252 AGALSLIKSMIVLQGQQT---------SGACSIAQ----WAAVEALNGPQ-----D----FV-------VNNRKIFEYRR 302 (400)
Q Consensus 252 v~~~~li~~l~~~~~~~~---------~~~~~~~q----~a~~~~l~~~~-----~----~~-------~~~~~~~~~~r 302 (400)
T Consensus 234 ~~R~~~~~~l~~~k~~~~~d~~P~r~E~GT~~yEllAG~~AavdYLa~lg~nlA~~~~gsrR~~lv~sf~~~~ayE~~l~ 313 (410)
T TIGR01976 234 WGRPELLKSLPPYKLEFSEDTGPERFELGTLQYELLAGVVAAVDYLAGLGRNLAASANGSRRERLVASFEAIEAYENRLA 313 (410)
T ss_pred EECHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 71146640468763367788888514514556026789999999999823210689886558999999999999999999
Q ss_pred CCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-----------CC
Q ss_conf 0002455304776033027408998626410233211332248989999999987397998350228-----------99
Q gi|254780602|r 303 DLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-----------HG 371 (400)
Q Consensus 303 ~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-----------~~ 371 (400)
T Consensus 314 ~~Ll~~L~~~P~~t~yG~~d~~R~~~RvPTv-----~F~v~~~~P~~~~~~La-~~~v~~~~GHfYA~~~~~~LGl~~~~ 387 (410)
T TIGR01976 314 ERLLAGLSDLPGVTVYGVQDEKRLAERVPTV-----AFTVAGLSPQRVVRRLA-DQGVDVWAGHFYAVRLLRRLGLEADG 387 (410)
T ss_pred HHHHHHHHHCCCEEEECHHHHHHHHHCCCEE-----EEEECCCCHHHHHHHHH-HCCCEEECCCCHHHHHHHHCCCCCCC
T ss_conf 9999998748956997355786464259758-----89727878799999985-36863312641168999865898988
Q ss_pred CEEEEEEE--CCHHHHHHH
Q ss_conf 72899962--999999999
Q gi|254780602|r 372 PSIRISYA--VSDAILEEA 388 (400)
Q Consensus 372 ~~iRis~~--~~~e~l~~a 388 (400)
T Consensus 388 GvvR~gLaHY~t~eevd~l 406 (410)
T TIGR01976 388 GVVRVGLAHYNTAEEVDRL 406 (410)
T ss_pred CEEEEEECCCCCHHHHHHH
T ss_conf 7389852577988999999