HHsearch alignment for GI: 254780602 and conserved domain: TIGR03235

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.78  E-value=1.7e-19  Score=138.83  Aligned_cols=289  Identities=15%  Similarity=0.121  Sum_probs=173.6

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCC-CCCC-----------CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98899999999999838875699-8778-----------98999999998642101333322332334543333222222
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETKYT-AVAG-----------ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~Y~-~~~G-----------~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
T Consensus         8 tp~~~~v~~~~~~~~~~~---~~Np~s~~h~~g~~a~~~le~aR~~ia~~l----g--a~~~eiiFTsg~Tes~nl~i~g   78 (354)
T TIGR03235         8 TPVDPEVAEVMLPFLLEE---FGNPGSRTHEHGHNAKKAVERARKQVAEAL----G--AQTKEVIFTSGATESNNIAILG   78 (354)
T ss_pred             CCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----C--CCCCCEEEECCHHHHHHHHHHH
T ss_conf             989999999999999866---879730312899999999999999999980----9--9967789968837999999999


Q ss_pred             CC----CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             23----322322223333232222---22222222222222222322210333100012212201211354210000123
Q gi|254780602|r  111 TV----NMGDEVLIPRPYWVSYPD---MVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQ  183 (400)
Q Consensus       111 ~~----~~Gd~Vlv~~P~y~~y~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~  183 (400)
T Consensus        79 ~~~~~~~~g~~ii~s~~EH~svl~~~~~l~~~G~~v~~~~vd~~G--~id~~~l~~~l~~~t~lvsi~~~nnetG~i~pi  156 (354)
T TIGR03235        79 LARAHENKGKHIITTAIEHPAILEPARALERNGFTVTYLEVDESG--RVSVEELADAIRDDTLLVSIMHVNNETGSLQPI  156 (354)
T ss_pred             HHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
T ss_conf             998502699999981003044799999999649689995557898--287799998726897799998875666763889


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH--H
Q ss_conf             33321112233333201110122110000012233222111233322574146544322344544422110122687--5
Q gi|254780602|r  184 NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKS--M  261 (400)
Q Consensus       184 ~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~--l  261 (400)
T Consensus       157 ~~---i~~~~-~~~g~~~~vDa~Q~~----g~~~id~~~~-----~~D~~s~S~HK~~GP~G--iG~L~vr~~~~~~~~l  221 (354)
T TIGR03235       157 RE---IAELC-EAREVFFHSDAAQVV----GKITVDLERD-----HIDLISLSGHKAYGPKG--IGALYIRKRGKPKAPL  221 (354)
T ss_pred             HH---HHHHH-HCCCCEEEEECHHCC----CCCCCCHHHH-----CCCEEEEECCCCCCCCC--EEEEEEECCCCCCCCC
T ss_conf             99---98865-225641562500115----8755577884-----99737631000348871--4999980466766664


Q ss_pred             HHHC----CC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCCEEEECCCCEEEEEECCCC
Q ss_conf             3100----12--22332-22222222222346764322222211000000024553-04776033027408998626410
Q gi|254780602|r  262 IVLQ----GQ--QTSGA-CSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQ-GVPGIRYMIPDGAFYLYPSCQDL  333 (400)
Q Consensus       262 ~~~~----~~--~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~-~~~g~~~~~p~g~~y~~~~~~~~  333 (400)
T Consensus       222 ~Pl~~GGgqe~g~r~GT~nv~~i~g~~~A~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~v~i~g~~~~-----r~p~i  296 (354)
T TIGR03235       222 APIMFGGGQERGLRPGTLPVPLIVGMGEAAEIARRNAQAWGVRLRAMCNLLRDALQTSLPGVKLNGDPAE-----TLPNI  296 (354)
T ss_pred             CCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-----CCCCE
T ss_conf             6403689886874689965999999999999999828999999999999999999745996596588224-----75888


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC
Q ss_conf             23321133224898999999998739799835022
Q gi|254780602|r  334 IGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF  368 (400)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F  368 (400)
T Consensus       297 ~s----~~~~gi~~~~l~~~L-~-~~iavstGSAC  325 (354)
T TIGR03235       297 LS----FSFEGVNPEALIRNL-K-ADAAVSTGSAC  325 (354)
T ss_pred             EE----EEECCCCHHHHHHHH-C-CCCEEEHHHHC
T ss_conf             99----997996999999986-3-99899822420