HHsearch alignment for GI: 254780602 and conserved domain: TIGR03235
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.78 E-value=1.7e-19 Score=138.83 Aligned_cols=289 Identities=15% Similarity=0.121 Sum_probs=173.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCC-CCCC-----------CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899999999999838875699-8778-----------98999999998642101333322332334543333222222
Q gi|254780602|r 43 FDMPENVKYAVVRAMERGETKYT-AVAG-----------ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA 110 (400)
Q Consensus 43 ~~~p~~i~~a~~~al~~~~~~Y~-~~~G-----------~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~ 110 (400)
T Consensus 8 tp~~~~v~~~~~~~~~~~---~~Np~s~~h~~g~~a~~~le~aR~~ia~~l----g--a~~~eiiFTsg~Tes~nl~i~g 78 (354)
T TIGR03235 8 TPVDPEVAEVMLPFLLEE---FGNPGSRTHEHGHNAKKAVERARKQVAEAL----G--AQTKEVIFTSGATESNNIAILG 78 (354)
T ss_pred CCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----C--CCCCCEEEECCHHHHHHHHHHH
T ss_conf 989999999999999866---879730312899999999999999999980----9--9967789968837999999999
Q ss_pred CC----CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 23----322322223333232222---22222222222222222322210333100012212201211354210000123
Q gi|254780602|r 111 TV----NMGDEVLIPRPYWVSYPD---MVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQ 183 (400)
Q Consensus 111 ~~----~~Gd~Vlv~~P~y~~y~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~ 183 (400)
T Consensus 79 ~~~~~~~~g~~ii~s~~EH~svl~~~~~l~~~G~~v~~~~vd~~G--~id~~~l~~~l~~~t~lvsi~~~nnetG~i~pi 156 (354)
T TIGR03235 79 LARAHENKGKHIITTAIEHPAILEPARALERNGFTVTYLEVDESG--RVSVEELADAIRDDTLLVSIMHVNNETGSLQPI 156 (354)
T ss_pred HHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
T ss_conf 998502699999981003044799999999649689995557898--287799998726897799998875666763889
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH--H
Q ss_conf 33321112233333201110122110000012233222111233322574146544322344544422110122687--5
Q gi|254780602|r 184 NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKS--M 261 (400)
Q Consensus 184 ~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~--l 261 (400)
T Consensus 157 ~~---i~~~~-~~~g~~~~vDa~Q~~----g~~~id~~~~-----~~D~~s~S~HK~~GP~G--iG~L~vr~~~~~~~~l 221 (354)
T TIGR03235 157 RE---IAELC-EAREVFFHSDAAQVV----GKITVDLERD-----HIDLISLSGHKAYGPKG--IGALYIRKRGKPKAPL 221 (354)
T ss_pred HH---HHHHH-HCCCCEEEEECHHCC----CCCCCCHHHH-----CCCEEEEECCCCCCCCC--EEEEEEECCCCCCCCC
T ss_conf 99---98865-225641562500115----8755577884-----99737631000348871--4999980466766664
Q ss_pred HHHC----CC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCCEEEECCCCEEEEEECCCC
Q ss_conf 3100----12--22332-22222222222346764322222211000000024553-04776033027408998626410
Q gi|254780602|r 262 IVLQ----GQ--QTSGA-CSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQ-GVPGIRYMIPDGAFYLYPSCQDL 333 (400)
Q Consensus 262 ~~~~----~~--~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~-~~~g~~~~~p~g~~y~~~~~~~~ 333 (400)
T Consensus 222 ~Pl~~GGgqe~g~r~GT~nv~~i~g~~~A~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~v~i~g~~~~-----r~p~i 296 (354)
T TIGR03235 222 APIMFGGGQERGLRPGTLPVPLIVGMGEAAEIARRNAQAWGVRLRAMCNLLRDALQTSLPGVKLNGDPAE-----TLPNI 296 (354)
T ss_pred CCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-----CCCCE
T ss_conf 6403689886874689965999999999999999828999999999999999999745996596588224-----75888
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC
Q ss_conf 23321133224898999999998739799835022
Q gi|254780602|r 334 IGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF 368 (400)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F 368 (400)
T Consensus 297 ~s----~~~~gi~~~~l~~~L-~-~~iavstGSAC 325 (354)
T TIGR03235 297 LS----FSFEGVNPEALIRNL-K-ADAAVSTGSAC 325 (354)
T ss_pred EE----EEECCCCHHHHHHHH-C-CCCEEEHHHHC
T ss_conf 99----997996999999986-3-99899822420