HHsearch alignment for GI: 254780602 and conserved domain: TIGR03531
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=96.61 E-value=0.00027 Score=46.21 Aligned_cols=298 Identities=16% Similarity=0.150 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999986421013333223323345433-3322222223--32232-22233332322222222222222222222232
Q gi|254780602|r 74 REAIVEKFRRDNDLHYTSDQIIVGTGAKH-VIFNALMATV--NMGDE-VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDN 149 (400)
Q Consensus 74 R~aia~~~~~~~g~~~~~e~I~it~G~~~-~l~~~~~~~~--~~Gd~-Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~ 149 (400)
T Consensus 107 Tn~l~ld~lr~~G~~-s~~~~~vvP~ATGMsL~LcL~alr~~rp~a~yViw~RiDQKSc~K~i~~AGl~pivie~~l~gd 185 (444)
T TIGR03531 107 TNKLVKDFLKLLGLR-SVKSAIVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGLEPRVIETVLDGD 185 (444)
T ss_pred HHHHHHHHHHHCCCC-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEEEECCC
T ss_conf 999999999983985-3265799625345189999999850188998899853555326889986597279974075188
Q ss_pred -CCCHHHHHHCCCCCC-C-CCE-EECCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf -221033310001221-2-201-21135421000012---3333211122333332011101221100000122332221
Q gi|254780602|r 150 -FQVSPEKLEQAITPK-T-KWL-FLNSPSNPSGVVYS---QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVN 222 (400)
Q Consensus 150 -~~~d~~~l~~~i~~~-~-k~i-~l~nP~NPTG~v~s---~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~ 222 (400)
T Consensus 186 ~l~tdv~~ie~~i~~~g~~~i~cVlS-----TTScFAPR~~D~i~eiAklC~-~~~IpHvVNNAYGlQ~---~~~~~~i~ 256 (444)
T TIGR03531 186 RLTTDVEDIERAIEEIGPENILCVLS-----TTSCFAPRSPDDIEEIAKICA-KYDIPHVVNNAYGLQS---NKYMEKIN 256 (444)
T ss_pred EEECCHHHHHHHHHHHCCCCEEEEEE-----CCCCCCCCCCCCHHHHHHHHH-HCCCCEEECCHHHHHH---HHHHHHHH
T ss_conf 77469999999999828676479985-----365459999766999999999-7499837842036617---99999999
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCC-CCCC--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 112333225741465443223445444-2211--0122687531001222332222222222223467643222222110
Q gi|254780602|r 223 VEPSLYERTLVVNGVSKAYAMTGLRIG-YAAG--ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFE 299 (400)
Q Consensus 223 ~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v~--~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 299 (400)
T Consensus 257 ~A~r~GRVDa~VQStDKNflVP---VGGaII~s~d~~~i~~is~~YPGRAS~--sp~lDlfITLLslG~~gy~~Ll~eRk 331 (444)
T TIGR03531 257 KAIKVGRVDAVVSSTDKNFMVP---VGGAIIYSFDENFIQEISKSYPGRASA--SPSLDVLITLLSMGSKGYLELLKERK 331 (444)
T ss_pred HHHHCCCCEEEEEECCCCEEEE---CCCEEEEECCHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986498319997068662543---487489718889999998418997777--40799999999974888999999999
Q ss_pred CCCCCHHHHHHCC---CCCEEEE-CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH--CCEEE-ECCC------
Q ss_conf 0000002455304---7760330-27408998626410233211332248989999999987--39799-8350------
Q gi|254780602|r 300 YRRDLCVAQLQGV---PGIRYMI-PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEI--EKVAV-VQGS------ 366 (400)
Q Consensus 300 ~~r~~~~~~L~~~---~g~~~~~-p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~--~gV~v-~pG~------ 366 (400)
T Consensus 332 e~~~~l~~~L~~~a~~~gerlL~t~~N~IS~aitl~~l---------~~~~~t~lGsmLf~r~VsG~RVV~~~~~k~i~g 402 (444)
T TIGR03531 332 EMYKYLKELLQKLAERHGERLLDVPENPISSAMTLNTL---------RPKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGG 402 (444)
T ss_pred HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEECCCC---------CCCCHHHHHHHHHHCCCCCCEEECCCCCEEECC
T ss_conf 99999999999999982987214899950577873667---------876789999999736887561775899738878
Q ss_pred ----CCCCC------CEEEEE--EECCHHHHHHHHHHHHHH
Q ss_conf ----22899------728999--629999999999999999
Q gi|254780602|r 367 ----SFGHG------PSIRIS--YAVSDAILEEACVRIKRF 395 (400)
Q Consensus 367 ----~Fg~~------~~iRis--~~~~~e~l~~al~rl~~~ 395 (400)
T Consensus 403 ~~F~~~gsh~~~yp~~Ylt~aaaIG~~~~dvd~f~~rLdk~ 443 (444)
T TIGR03531 403 CEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 77506777767785257998888188589999999998614