HHsearch alignment for GI: 254780602 and conserved domain: TIGR03537
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=100.00 E-value=0 Score=547.11 Aligned_cols=343 Identities=26% Similarity=0.431 Sum_probs=311.6
Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7266565897498899999999999838875699877898999999998642101333322-332334543333222222
Q gi|254780602|r 32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMA 110 (400)
Q Consensus 32 ~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~ 110 (400)
T Consensus 1 ~ii~l~~g~P~~p~P~~i~~al~~a~~~-~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~d~~I~~t~Ga~~al~~~~~~ 79 (350)
T TIGR03537 1 RLFDFGTGDPKEPTPPIIRNALKNAVPE-VSQYPSAAGTKALRDAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLV 79 (350)
T ss_pred CEEECCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 9578769899999879999999996021-589989847499999999999998689989787799878838999999999
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 2332232---2223333232222222222222222222223222103331000122122012113542100001233332
Q gi|254780602|r 111 TVNMGDE---VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLR 187 (400)
Q Consensus 111 ~~~~Gd~---Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~ 187 (400)
T Consensus 80 ~~~~gd~~~~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~g~~~d~e~l~~~~~~~~~~i~l~nP~NPTG~v~s~~~l~ 159 (350)
T TIGR03537 80 FIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTPVKLKEEDGFLLRLEKVDKEILKETKIVWINYPHNPTGAVAPRSYLE 159 (350)
T ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 73888778769994698730699999769989997535544887799999974666871999899989836476999999
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 11122333332011101221100000122332221112333225741465443223445444221101226875310012
Q gi|254780602|r 188 ALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQ 267 (400)
Q Consensus 188 ~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~ 267 (400)
T Consensus 160 ~l~~~a-~~~~~~vi~DE~Y~~l~~~~~~-~~~~~~---~~~~~i~~~S~SK~~~~pGlR~G~~~~~~~li~~~~~~~~~ 234 (350)
T TIGR03537 160 ETIAIC-QEHNIILCSDECYTEIYFGEPP-HSALEV---GMENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLKKLRAN 234 (350)
T ss_pred HHHHHH-HCCCEEEEEEHHHHHHHCCCCC-CCHHHH---CCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 999863-2369079843122455348998-775563---46877999667545046775599997899999999998620
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 22332222222222223467643222222110000000245530477603302740899862641023321133224898
Q gi|254780602|r 268 QTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTD 347 (400)
Q Consensus 268 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~ 347 (400)
T Consensus 235 ~~~~~~~~~q~a~~~~~~-~~~~~~~~~~~~~~~r~~~~~~l~~-~g~~~~~p~g~~~~w~~~~~-----------~~~~ 301 (350)
T TIGR03537 235 FGVASPDFVQAAAKAAWS-DDSHVIERRKIFRRKRDLFLEFFNK-KGLEYLYPDATFYLWVKVPN-----------GISS 301 (350)
T ss_pred CCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECCCCEEEEEEECCC-----------CCCH
T ss_conf 677728999999999956-8099999999999999999999864-89888268822599897999-----------9899
Q ss_pred HHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 99999999873979983502289--972899962999999999999999
Q gi|254780602|r 348 LDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKR 394 (400)
Q Consensus 348 ~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~ 394 (400)
T Consensus 302 ~~~~~~ll-~~gV~v~pG~~Fg~~~~~~~Rl~~~~~~e~l~ealrrl~~ 349 (350)
T TIGR03537 302 KDYALRLL-ENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRIWES 349 (350)
T ss_pred HHHHHHHH-HCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
T ss_conf 99999999-7998997673118999986999972899999999999861