>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

Probab=100.00 E-value=0 Score=644.44 Aligned_cols=378 Identities=30% Similarity=0.500 Sum_probs=356.4 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHH Q ss_conf 67889873897589999999999998699726656589749889999999999983887-56998778989999999986 Q gi|254780602|r 3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKF 81 (400) Q Consensus 3 ~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~ 81 (400) T Consensus 1 ~~~~r~~~~~~~~~~~i~~~a~~~~~~G~dvi~l~ig~pdf~~p~~i~~a~~~a~~~~~~~~Y~~~~G~~~lreaia~~~ 80 (383) T TIGR03540 1 KLADRIENLPPYLFAEIDKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWY 80 (383) T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 95458540899899999999999985699858888998999989999999999982888765499878499999999999 Q ss_pred HHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC Q ss_conf 421013333223-3233454333322222223322322223333232222222222222222222223222103331000 Q gi|254780602|r 82 RRDNDLHYTSDQ-IIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA 160 (400) Q Consensus 82 ~~~~g~~~~~e~-I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 160 (400) T Consensus 81 ~~~~g~~~~p~~~vi~t~Ga~~al~~~~~~l~~pGD~Vli~~P~Y~~y~~~~~~~g~~~v~vpl~~~~~~~~d~e~l~~~ 160 (383) T TIGR03540 81 KRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPED 160 (383) T ss_pred HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH T ss_conf 99868989967669984782599999999966898989987898601699999719858996133577985799999874 Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 12212201211354210000123333211122333332011101221100000122332221112333225741465443 Q gi|254780602|r 161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA 240 (400) Q Consensus 161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~ 240 (400) T Consensus 161 ~~~~~k~iil~~P~NPTG~v~s~~~l~~i~~la-~~~~i~iIsDEiY~~l~~~~~~~~s~~~~-~~~~~~~i~~~S~SK~ 238 (383) T TIGR03540 161 IAKKAKLMFINYPNNPTGAVAPLKFFKELVEFA-KEYNIIVCHDNAYSEITFDGYKAPSFLEV-DGAKDVGIEFHSLSKT 238 (383) T ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCC-CCCCCEEECCHHHHHHCCCCCCCCCCEEC-CCCCCEEEEEEECCCC T ss_conf 523774999899989707012102222010012-45540576110255530389999771113-6655425776302354 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC Q ss_conf 22344544422110122687531001222332222222222223467643222222110000000245530477603302 Q gi|254780602|r 241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP 320 (400) Q Consensus 241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p 320 (400) T Consensus 239 ~~~~G~RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~al~~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~~p 317 (383) T TIGR03540 239 YNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKP 317 (383) T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECC T ss_conf 478873489622899999999999755135676599999999985919999999999999999999999876-9877357 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHH Q ss_conf 74089986264102332113322489899999999873979983502289--972899962999999999999999 Q gi|254780602|r 321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKR 394 (400) Q Consensus 321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~ 394 (400) T Consensus 318 ~g~~~~w~~~~~-----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~~~~~~e~l~eal~RL~k 382 (383) T TIGR03540 318 KATFYVWVPVPE-----------GYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383) T ss_pred CCEEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC T ss_conf 805799898999-----------98989999999983999998885328899886999986999999999999844

HHsearch alignment for GI: 254780602 and conserved domain: TIGR03540