HHsearch alignment for GI: 254780602 and conserved domain: TIGR03588
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.73 E-value=9.1e-18 Score=128.28 Aligned_cols=201 Identities=20% Similarity=0.211 Sum_probs=136.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 8974988999999999998388756998778989999999986421013333223323345433332222222-332232
Q gi|254780602|r 39 GEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT-VNMGDE 117 (400)
Q Consensus 39 G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~-~~~Gd~ 117 (400)
T Consensus 4 ~~p~i--~~~e~~~v~~~l~s~~~~~G~--~v~~fE~~~~~~~g~k~--------~v~~~sgT~AL~lal~al~~~~gde 71 (380)
T TIGR03588 4 GRQSI--DQDDIDAVVEVLKSDFLTQGP--TVPAFEEALAEYVGAKY--------AVAFNSATSALHIACLALGVGPGDE 71 (380)
T ss_pred CCCCC--CHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHCCCE--------EEEECCHHHHHHHHHHHCCCCCCCE
T ss_conf 89999--999999999998479866897--69999999999978594--------9997588999999999849999899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC----CCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222333323222222222222222222222322210333100012----2122012113542100001233332111223
Q gi|254780602|r 118 VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT----PKTKWLFLNSPSNPSGVVYSQNRLRALADVL 193 (400)
Q Consensus 118 Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~----~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~ 193 (400)
T Consensus 72 Vivp~~tf~at~~ai~~~Ga~pvf~Dvd~~-t~~id~~~l~~~it~~~~~ktkaIi~vh~---~G~~---~d~~~i~~ia 144 (380)
T TIGR03588 72 VWTTPITFVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAAKGKLPKAIVPVDF---AGKS---VDMQAIAALA 144 (380)
T ss_pred EEECCCCCHHHHHHHHHCCCEEEEEECCHH-HCCCCHHHHHHHHHHCCCCCCEEEEEECC---CCEE---CCHHHHHHHH
T ss_conf 996785308867999987996899844100-01489888777776436777259999489---8543---4899999999
Q ss_pred CCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCC
Q ss_conf 33332011101221100-000122332221112333225741465--4432234454442211-012268753100122
Q gi|254780602|r 194 VRNPHVHIISDDIYEHI-VYRNCQFSNIVNVEPSLYERTLVVNGV--SKAYAMTGLRIGYAAG-ALSLIKSMIVLQGQQ 268 (400)
Q Consensus 194 a~~~~i~ii~De~Y~~l-~~~~~~~~s~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~v~-~~~li~~l~~~~~~~ 268 (400)
T Consensus 145 -~~~~i~lIEDaA~a~Ga~~~gk~~Gs~-----~~gd--~~~fSF~~~K~it-tG-eGG~i~tnd~~l~~~~r~lr~~G 213 (380)
T TIGR03588 145 -KKHGLKIIEDASHALGAEYGGKPVGNC-----RYAD--ATVFSFHPVKIIT-TA-EGGAVTTNDEELAERMRLLRSHG 213 (380)
T ss_pred -HHCCCEEEEECCCHHCCCCCCCCCCCC-----CCCC--EEEEECCCCCCCC-CC-CCEEEEECCHHHHHHHHHHHHCC
T ss_conf -986988999880011577578765664-----4352--4677335555577-78-85399969999999999999769