HHsearch alignment for GI: 254780602 and conserved domain: cd00378
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.52 E-value=6.4e-13 Score=98.75 Aligned_cols=345 Identities=15% Similarity=0.102 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCC------CCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999998699726656589749889999999999983887-5699------87789899999999864210133
Q gi|254780602|r 16 TLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYT------AVAGISPLREAIVEKFRRDNDLH 88 (400)
Q Consensus 16 ~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~------~~~G~~~lR~aia~~~~~~~g~~ 88 (400)
T Consensus 7 i~~~i~~E~~rq~~~---l~LIaSEN-~-~S~~v~~a~gS~ltnkYaeG~pg~Ryy~G~~~iD~iE~la~~rak~LF~a~ 81 (402)
T cd00378 7 IAEIIKKENERQRET---LELIASEN-F-TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE 81 (402)
T ss_pred HHHHHHHHHHHHHHC---CEEECCCC-C-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999809---64755766-4-799999985673015476889986466766259999999999999983898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCC--CCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 332233233454333322222223322322223333232222-----2222222--222222222232221033310001
Q gi|254780602|r 89 YTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD-----MVALCGG--IPVFVDTQQDDNFQVSPEKLEQAI 161 (400)
Q Consensus 89 ~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~-----~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i 161 (400)
T Consensus 82 --~anVqp~SGs-~AN~av~~all~pGD~il~l~l~~GGHltHg~~~~v~~~g~~~~~~~Y~vd~~~-~~IDyd~~~~~a 157 (402)
T cd00378 82 --YANVQPHSGS-QANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPET-GLIDYDALEKMA 157 (402)
T ss_pred --CCCCCCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC-CCCCHHHHHHHH
T ss_conf --7475878739-999999999727999899866434777566778772021356788963245565-871899999999
Q ss_pred -CCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf -22122012113542100001233-332111223333320111012211-000001223322211123332257414654
Q gi|254780602|r 162 -TPKTKWLFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIYE-HIVYRNCQFSNIVNVEPSLYERTLVVNGVS 238 (400)
Q Consensus 162 -~~~~k~i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y~-~l~~~~~~~~s~~~~~~~~~~~~i~~~S~S 238 (400)
T Consensus 158 ~~~kPklIi~G------~S~y~r~~d~~~~reIa-d~vgA~l~~D~aHi~GLIA~g-~~p~Pl~---~A---Dvvt~tTH 223 (402)
T cd00378 158 LEFKPKLIVAG------ASAYPRPIDFKRFREIA-DEVGAYLLVDMAHVAGLVAGG-VFPNPLP---GA---DVVTTTTH 223 (402)
T ss_pred HHCCCCEEEEC------CCCCCCCCCHHHHHHHH-HHCCCEEEEEHHHHHHHEECC-CCCCCCC---CC---EEEECCCC
T ss_conf 86599699977------71565655889999999-870988985501234430356-5799768---76---57744643
Q ss_pred CCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 43223445444221101-226875310012223322222222222-2346-76432222221100000002455304776
Q gi|254780602|r 239 KAYAMTGLRIGYAAGAL-SLIKSMIVLQGQQTSGACSIAQWAAVE-ALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPGI 315 (400)
Q Consensus 239 K~~~~~G~RiG~~v~~~-~li~~l~~~~~~~~~~~~~~~q~a~~~-~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g~ 315 (400)
T Consensus 224 KTl--rGPrGGiIl~~~~~~~~kId~avfPg~qggph~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NAkaLA~~L~~~-G~ 300 (402)
T cd00378 224 KTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GF 300 (402)
T ss_pred CCC--CCCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf 457--899840899542789988546509864467456678999999999868668999999999999999999858-94
Q ss_pred EEEEC-CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE----CCCCCC--CCCEEEEEE------ECCH
Q ss_conf 03302-7408998626410233211332248989999999987397998----350228--997289996------2999
Q gi|254780602|r 316 RYMIP-DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV----QGSSFG--HGPSIRISY------AVSD 382 (400)
Q Consensus 316 ~~~~p-~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg--~~~~iRis~------~~~~ 382 (400)
T Consensus 301 ~vv~ggTd~H~vlvd~~~~----------g~~G~~-a~~~Le~~gI~~Nkn~iP~d~~~~~~~sGiRiGT~a~T~rG~~e 369 (402)
T cd00378 301 KVVSGGTDNHLVLVDLRPK----------GITGKA-AEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGE 369 (402)
T ss_pred EEECCCCCCCEEEEECCCC----------CCCHHH-HHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCH
T ss_conf 7974899887799966645----------689999-99999984908754748899999999976164778998589988
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q gi|254780602|r 383 AILEEACVRIKRFCH 397 (400)
Q Consensus 383 e~l~~al~rl~~~l~ 397 (400)
T Consensus 370 ~em~~ia~lI~~~l~ 384 (402)
T cd00378 370 EEMEEIADFIARALK 384 (402)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999981