HHsearch alignment for GI: 254780602 and conserved domain: pfam05889
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=96.83 E-value=0.0004 Score=45.15 Aligned_cols=301 Identities=16% Similarity=0.151 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999864210133332233233454333322-222223--32232-2223333232222222222222222222223
Q gi|254780602|r 73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFN-ALMATV--NMGDE-VLIPRPYWVSYPDMVALCGGIPVFVDTQQDD 148 (400)
Q Consensus 73 lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~-~~~~~~--~~Gd~-Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~ 148 (400)
T Consensus 57 LTn~l~~d~lr~~G~~-s~~~~~vvP~aTG-Msl~~~L~~~~~rp~a~yViw~RiDqKSc~Kai~~AGl~p~vVe~~~~~ 134 (389)
T pfam05889 57 LTNELVKDFLKLLGLR-EVKNCFVVPLATG-MSLLCMLSWRRKRPKAKYVIWPRIDQKSSIKAAERAGFEPRLVETVLDG 134 (389)
T ss_pred HHHHHHHHHHHHCCCC-CCCCEEEECCCCC-HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEEEECC
T ss_conf 9999999999982974-3165789504104-7999999998558899789986355522689999769714887525228
Q ss_pred C-CCCHHHHHHCCCCCC-CC--CEEECCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 2-221033310001221-22--0121135421000012---333321112233333201110122110000012233222
Q gi|254780602|r 149 N-FQVSPEKLEQAITPK-TK--WLFLNSPSNPSGVVYS---QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIV 221 (400)
Q Consensus 149 ~-~~~d~~~l~~~i~~~-~k--~i~l~nP~NPTG~v~s---~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~ 221 (400)
T Consensus 135 d~l~Td~~~ie~~i~~~g~~~ilcVlsT-----TScFaPR~pD~v~~IAklC~-~~~IpHvVNnAYGlQ~---~~~~~~i 205 (389)
T pfam05889 135 DYLITDVNDVETIIEEKGEEVILAVLST-----TSCFAPRSPDNVKEIAKICA-EYDVPHLVNGAYGIQS---EETIRLI 205 (389)
T ss_pred CEEECCHHHHHHHHHHHCCCCEEEEEEC-----CCCCCCCCCCCHHHHHHHHH-HCCCCEEECCHHHHHH---HHHHHHH
T ss_conf 8243589999999998387766899844-----66569999667999999999-7499747843036617---9999999
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCC--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1112333225741465443223445444-2211--012268753100122233222222222222346764322222211
Q gi|254780602|r 222 NVEPSLYERTLVVNGVSKAYAMTGLRIG-YAAG--ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIF 298 (400)
Q Consensus 222 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v~--~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 298 (400)
T Consensus 206 ~~a~r~GRVDa~VQStDKNflVP---VGGaIIas~d~~~i~~is~~YPGRAS~--sp~lDlfITLLslG~~gy~~Ll~eR 280 (389)
T pfam05889 206 AAAHECGRVDAVVQSLDKNFIVP---VGGAIIAAFDESFIQEISEEYPGRASA--RPSKDKLITLLSLGCKAYLALMKEQ 280 (389)
T ss_pred HHHHHCCCCEEEEEECCCCEEEE---CCCEEEEECCHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986388218997068662553---487489708889999998418997777--4079999999997488899999999
Q ss_pred CCCCCCHHHHHHCC---CCCEEEE-CCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH--CCEEEEC-CCCCC
Q ss_conf 00000002455304---7760330-274--08998626410233211332248989999999987--3979983-50228
Q gi|254780602|r 299 EYRRDLCVAQLQGV---PGIRYMI-PDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEI--EKVAVVQ-GSSFG 369 (400)
Q Consensus 299 ~~~r~~~~~~L~~~---~g~~~~~-p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~--~gV~v~p-G~~Fg 369 (400)
T Consensus 281 ke~~~~l~e~L~~~a~~~ge~lL~t~~N~IS~ai--tl~~l~~------~~~~~~t~lgs~Lf~r~VsG~RvV~~~~~~~ 352 (389)
T pfam05889 281 KEMFPLLRELLKDLAEEVGEQLLDVPHNPISSAM--TLETLDE------ISKKGRTDLGSELFSRRVTGARVVRSSDPFG 352 (389)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEE--ECCCCCC------CCCCCHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 9999999999999999829875138999516888--7345566------6755499999999756787651665688853
Q ss_pred -------CCCEEEE--EEECCHHHHHHHHHHHHHHHH
Q ss_conf -------9972899--962999999999999999998
Q gi|254780602|r 370 -------HGPSIRI--SYAVSDAILEEACVRIKRFCH 397 (400)
Q Consensus 370 -------~~~~iRi--s~~~~~e~l~~al~rl~~~l~ 397 (400)
T Consensus 353 ~~~~~~y~~~Ylt~aaaiG~~~~dVd~f~~rL~k~l~ 389 (389)
T pfam05889 353 TIEGCEYHGRYLNIASAIGMKDEDVDYVIERLDEILE 389 (389)
T ss_pred EEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 4616768836789998708868999999999998529