RPSBLAST alignment for GI: 254780602 and conserved domain: TIGR03540

>gnl|CDD|163315 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383
 Score =  172 bits (437), Expect = 2e-43
 Identities = 114/379 (30%), Positives = 188/379 (49%), Gaps = 18/379 (4%)

Query: 21  QRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVE 79
           ++  + +++G+DV+ L  G+PD   P+++  A+ +A E  E  +Y +  G+   R+A+ +
Sbjct: 19  KKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVAD 78

Query: 80  KFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGI 138
            ++R   +    + +++   G+K  I +  +A VN GD VL+P P +  Y       GG 
Sbjct: 79  WYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGE 138

Query: 139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH 198
           P  +  ++++ F    + + + I  K K +F+N P+NP+G V      + L +   +  +
Sbjct: 139 PYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVE-FAKEYN 197

Query: 199 VHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI 258
           + +  D+ Y  I +   +  + + V     +  +  + +SK Y MTG RIG A G   LI
Sbjct: 198 IIVCHDNAYSEITFDGYKAPSFLEV-DGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLI 256

Query: 259 KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318
             +  ++    SG     Q+AA+ ALNGPQD V   RKI++ RRDL +  L+ + GI   
Sbjct: 257 AGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-GIDVE 315

Query: 319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRI 376
            P   FY++           P G    T  +F   LLE   V V  G  FG +G   IRI
Sbjct: 316 KPKATFYVW--------VPVPEG---YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRI 364

Query: 377 SYAVSDAILEEACVRIKRF 395
           S  V D  LEEA  RIK+ 
Sbjct: 365 SLTVPDERLEEAVARIKKL 383