RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str. psy62] (400 letters) >gnl|CDD|180244 PRK05764, PRK05764, aspartate aminotransferase; Provisional. Length = 393 Score = 586 bits (1514), Expect = e-168 Identities = 208/399 (52%), Positives = 271/399 (67%), Gaps = 7/399 (1%) Query: 1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG 60 M+ +S + RV PSATL + ++L+++G DV+ L AGEPDFD PE++K A + A++ G Sbjct: 1 MMKLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDG 60 Query: 61 ETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLI 120 +TKYT AGI LREAI K +RDN L Y Q+IV TGAK ++NA MA ++ GDEV+I Sbjct: 61 KTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVII 120 Query: 121 PRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180 P PYWVSYP+MV L GG+PVFV T +++ F+++ E+LE AITPKTK L LNSPSNP+G V Sbjct: 121 PAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAV 180 Query: 181 YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA 240 YS L A+ADV V + + ++SD+IYE +VY +F++I ++ P L +RT+ VNG SKA Sbjct: 181 YSPEELEAIADVAVEH-DIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKA 239 Query: 241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEY 300 YAMTG R+GYAAG LIK+M LQ TS SIAQ+AAV ALNGPQD V R+ FE Sbjct: 240 YAMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEE 299 Query: 301 RRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKV 360 RRDL V L +PG+ P+GAFY++P+ L+GK I L+F LLE V Sbjct: 300 RRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKS------ITDSLEFAEALLEEAGV 353 Query: 361 AVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL 399 AVV G +FG +R+SYA S LEE RI+RF SL Sbjct: 354 AVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESL 392 >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional. Length = 402 Score = 529 bits (1364), Expect = e-151 Identities = 206/391 (52%), Positives = 268/391 (68%) Query: 9 RRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVA 68 R++PS + AA R R+LR+ G ++ LT GEPDFD P+++K A V A+ERGETKYT V Sbjct: 11 SRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVN 70 Query: 69 GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSY 128 G LR+AI+ K R N LHY ++I VG GAK IF ALMAT+ GDEV+IP PYWVSY Sbjct: 71 GTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSY 130 Query: 129 PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRA 188 PDMV G PV V ++ F+++PE LE AITP+T+WL LN+PSNP+G VYS+ LRA Sbjct: 131 PDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRA 190 Query: 189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRI 248 LADVL+R+PHV +++DDIY+HI + + +++ P L +R LV NGVSK YAMTG RI Sbjct: 191 LADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRI 250 Query: 249 GYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQ 308 GYAAG LI ++ LQ Q +S SI+Q AA ALNG Q FV + +++ RRD +A Sbjct: 251 GYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALAL 310 Query: 309 LQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF 368 L +PG+ ++PDGAFYLY +C LIGK +P G V+ TD D V LL+ VAVVQG+++ Sbjct: 311 LNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAY 370 Query: 369 GHGPSIRISYAVSDAILEEACVRIKRFCHSL 399 G P R+S A S LEEAC RI+R +L Sbjct: 371 GLSPYFRLSIATSLETLEEACARIERAVAAL 401 >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated. Length = 378 Score = 279 bits (715), Expect = 1e-75 Identities = 147/396 (37%), Positives = 224/396 (56%), Gaps = 25/396 (6%) Query: 10 RVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAG 69 +QPS ++ DL + V+ L GEPDF P NV+ A +R++E+G T YTA AG Sbjct: 3 SLQPSGI----RKFFDLAANMEGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAG 58 Query: 70 ISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSY 128 + LR+ I + ++ + Y + +IIV GA + A+ A +N GDEVLI P +VSY Sbjct: 59 LLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSY 118 Query: 129 PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRA 188 +V L GG+PV V T ++ F+V P ++E AIT KTK + L SP+NP+G V +++ L Sbjct: 119 APLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEE 178 Query: 189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRI 248 +A V+V + ++SD+IY + Y +++ ++ + ERT++++G SK +AMTG R+ Sbjct: 179 IA-VIVEKHDLIVLSDEIYAELTYDE-AYTSFASI-KGMRERTILISGFSKGFAMTGWRL 235 Query: 249 GYAAGALSLIKSMIVLQGQQTSGAC--SIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCV 306 G+ A + ++M L+ Q S C ++AQ+AA+EAL D V+ R + RR+ V Sbjct: 236 GFIAAPVYFSEAM--LKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFV 293 Query: 307 AQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS 366 + G+ +P GAFY +PS +G + +F LL EKVAVV GS Sbjct: 294 TSFNEI-GLTCHVPGGAFYAFPSIS-------STG---LSSEEFAEQLLLEEKVAVVPGS 342 Query: 367 SFGHGPS--IRISYAVSDAILEEACVRIKRFCHSLQ 400 FG IR SYA S L+EA R+KRF + + Sbjct: 343 VFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENKK 378 >gnl|CDD|181083 PRK07683, PRK07683, aminotransferase A; Validated. Length = 387 Score = 265 bits (679), Expect = 2e-71 Identities = 143/393 (36%), Positives = 216/393 (54%), Gaps = 31/393 (7%) Query: 21 QRVRDLRSKGI-----------DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAG 69 RV+D++ GI +++ LT G+PDF P +VK A RA+ T YT AG Sbjct: 7 PRVKDIQISGIRQFSNMVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAG 66 Query: 70 ISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSY 128 + LR+A + DLHY+ + +IIV GA I A + G EV++P P + Y Sbjct: 67 LLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGY 126 Query: 129 PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRA 188 ++ LCG PVF+DT+ F+++ E LE AIT KT+ + L PSNP+GV S+ L+ Sbjct: 127 EPIIRLCGAKPVFIDTRST-GFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQD 185 Query: 189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRI 248 +ADVL ++ ++ ++SD+IY +VY S + P + E+T+V+NG+SK+++MTG RI Sbjct: 186 IADVL-KDKNIFVLSDEIYSELVYEQPHTS--IAHFPEMREKTIVINGLSKSHSMTGWRI 242 Query: 249 GYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQ 308 G+ L K ++ + + A SI+Q+AA+EAL +D R ++ RRD + Sbjct: 243 GFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNR 302 Query: 309 LQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF 368 L + G+ P GAFYL+PS IG + S DF L+E +AVV GS+F Sbjct: 303 LISM-GLDVEKPTGAFYLFPS----IGHFTMS------SFDFALDLVEEAGLAVVPGSAF 351 Query: 369 ---GHGPSIRISYAVSDAILEEACVRIKRFCHS 398 G G +R+SYA S L+E R++ F Sbjct: 352 SEYGEG-YVRLSYAYSIETLKEGLDRLEAFLQQ 383 >gnl|CDD|180923 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated. Length = 391 Score = 241 bits (618), Expect = 2e-64 Identities = 124/370 (33%), Positives = 205/370 (55%), Gaps = 21/370 (5%) Query: 32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTS 91 +L LT GEPDF P++VK A RA++ ++ YT +AG+ LR+A + + +L Y Sbjct: 31 GILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAP 90 Query: 92 -DQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF 150 ++I+V GA + +L A + GD+VL+P P + Y +V L G V +DT ++D F Sbjct: 91 ENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTEND-F 149 Query: 151 QVSPEKLEQAITP---KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY 207 ++PE LE+AI K K + LN P+NP+GV YS+ +++ALADVL + + +ISD++Y Sbjct: 150 VLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYD-IFVISDEVY 208 Query: 208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQ 267 + Y V++ L ++T+++NG+SK++AMTG RIG +I Sbjct: 209 SELTYTGEPH---VSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQY 265 Query: 268 QTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLY 327 + A ++AQ+AAVEAL +D + +K + RRD + ++ + G + + PDGAFY++ Sbjct: 266 LVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIF 324 Query: 328 PSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS--IRISYAVSDAIL 385 + S F+ + VA + G++FG +R+SYA S + Sbjct: 325 AKIPAGYNQDS---------FKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETI 375 Query: 386 EEACVRIKRF 395 +EA R+K + Sbjct: 376 KEAMKRLKEY 385 >gnl|CDD|169403 PRK08361, PRK08361, aspartate aminotransferase; Provisional. Length = 391 Score = 236 bits (603), Expect = 8e-63 Identities = 130/385 (33%), Positives = 208/385 (54%), Gaps = 21/385 (5%) Query: 17 LVAAQRVRDL---RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPL 73 L+ ++R+L SK +V+ L GEPDFD P+N+K A RA++ G T YT AGI L Sbjct: 16 LIQRSKIRELFERASKMENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPEL 75 Query: 74 REAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA 133 REAI E +++ + D +IV GA + A + + GDEV+IP P +V Y + Sbjct: 76 REAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAK 135 Query: 134 LCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVL 193 + P+ + ++++ FQ P++L + IT +T+ + +N P+NP+G + +A+AD+ Sbjct: 136 IAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADI- 194 Query: 194 VRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG 253 + +++I+SD+ YEH +Y + ++ P + T++ N SK +AMTG R+G+ Sbjct: 195 AEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP---DNTILANSFSKTFAMTGWRLGFVIA 251 Query: 254 ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDF--VVNNRKIFEYRRDLCVAQLQG 311 +IK MI L S Q A +EAL + + V RK + RR L + +L+ Sbjct: 252 PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE 311 Query: 312 VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-H 370 +P I+ P GAFY++ + + G S DF LLE +V V+ G++FG Sbjct: 312 MPHIKVFEPKGAFYVFANIDET-GMSSE---------DFAEWLLEKARVVVIPGTAFGKA 361 Query: 371 GPS-IRISYAVSDAILEEACVRIKR 394 G IRISYA S L EA R+++ Sbjct: 362 GEGYIRISYATSKEKLIEAMERMEK 386 >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated. Length = 398 Score = 219 bits (559), Expect = 1e-57 Identities = 126/386 (32%), Positives = 199/386 (51%), Gaps = 31/386 (8%) Query: 24 RDLRSKGIDVLCLTAGEP---DFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK 80 R+L KGI V+ L G+P DF PE++K A RA++ G Y G+ LREAIV++ Sbjct: 23 RELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKR 82 Query: 81 FRRDNDLHYTSDQIIVGTG---AKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGG 137 +R N + T D + V A +IF AL ++ GDE+LIP P + Y +V GG Sbjct: 83 EKRKNGVDITPDDVRVTAAVTEALQLIFGAL---LDPGDEILIPGPSYPPYTGLVKFYGG 139 Query: 138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNP 197 +PV T +++ +Q + + + IT KTK + + +P+NP+G +Y + L+ + D + Sbjct: 140 VPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILD--IAGE 197 Query: 198 H-VHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA---- 252 H + +ISD+IY+ + Y + + ++ + +V+NG+SK Y TG R+GY Sbjct: 198 HDLPVISDEIYDLMTYEG-KHVSPGSLTKDV--PVIVMNGLSKVYFATGWRLGYIYFVDP 254 Query: 253 -GALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG 311 G L+ ++ I + + AQ+AA+ L GP D++ K + RRD +L Sbjct: 255 EGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE 314 Query: 312 VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG 371 +PGI P GAFY++P ++ P D D +FV +L V V GS FG Sbjct: 315 IPGISTTKPQGAFYIFPRIEE-----GPWKD----DKEFVLDVLHEAHVLFVHGSGFGEY 365 Query: 372 PS--IRISYAVSDAILEEACVRIKRF 395 + R+ + ILEEA R + F Sbjct: 366 GAGHFRLVFLPPVEILEEAMDRFEEF 391 >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional. Length = 384 Score = 218 bits (557), Expect = 2e-57 Identities = 115/385 (29%), Positives = 201/385 (52%), Gaps = 17/385 (4%) Query: 12 QPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGIS 71 Q ++A + L K D++ L+ G+PD E++ A ++G T+YT G Sbjct: 12 QMEVNIMAE--IATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDV 69 Query: 72 PLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM 131 L E I++ + ++ DL + ++I+ GA H ++ AL + ++ GDEV+I PY+ Y D Sbjct: 70 ELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQ 129 Query: 132 VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD 191 + + GG P+ ++T ++D FQ++ +KLE IT KTK + LNSP+NP+G V+S+ L +A Sbjct: 130 IEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAK 189 Query: 192 VLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA 251 + + IISD++Y+ + F + + + ERT+ SK +AMTG RIGY Sbjct: 190 IAIEYDLF-IISDEVYDGFSFYE-DFVPMATLA-GMPERTITFGSFSKDFAMTGWRIGYV 246 Query: 252 AGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG 311 +I++ ++ A +I+Q AA+ AL V ++ F+ R + +++ Sbjct: 247 IAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES 306 Query: 312 VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG 371 +P + P G+ Y + + + G S ++F LL+ V V+ G +FG Sbjct: 307 IPNLSLHPPKGSIYAFINIKK-TGLSS---------VEFCEKLLKEAHVLVIPGKAFGES 356 Query: 372 PS--IRISYAVSDAILEEACVRIKR 394 IR++ V +LEEA RI++ Sbjct: 357 GEGYIRLACTVGIEVLEEAFNRIEK 381 >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional. Length = 394 Score = 197 bits (504), Expect = 4e-51 Identities = 120/379 (31%), Positives = 174/379 (45%), Gaps = 49/379 (12%) Query: 39 GEPDFDMPENVKYAVVRAMERGET---KYTAVAGISPLREAIVEKFRRDNDLHYTSDQII 95 G P P VK A+ E + Y AG +REAI E R T+D I+ Sbjct: 41 GNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIV 100 Query: 96 VGTGAK---HVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQV 152 + GA +V A++ N GDEV++ PY+V Y V GG V V T D FQ Sbjct: 101 MTCGAAGALNVALKAIL---NPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD-TDTFQP 156 Query: 153 SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVR-----NPHVHIISDDIY 207 + LE AITPKTK + +NSP+NP+GVVYS+ L+ALA +L +++ISD+ Y Sbjct: 157 DLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPY 216 Query: 208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA------GALSLIKSM 261 IVY + I Y+ ++VV SK+ ++ G RIGY A A L+ ++ Sbjct: 217 REIVYDGAEVPYI----FKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAAL 272 Query: 262 IVLQGQQTSG---ACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318 + + G A ++ Q + L+ D I++ RDL L + G + Sbjct: 273 V--FANRILGFVNAPALMQRVVAKCLDATVD-----VSIYKRNRDLLYDGLTEL-GFECV 324 Query: 319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY 378 P GAFYL+P KSP D D+ F + + +V GS FG R+SY Sbjct: 325 KPQGAFYLFP--------KSPEED----DVAFCEKAKK-HNLLLVPGSGFGCPGYFRLSY 371 Query: 379 AVSDAILEEACVRIKRFCH 397 V +E + ++ Sbjct: 372 CVDTETIERSLPAFEKLAK 390 >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional. Length = 382 Score = 197 bits (503), Expect = 4e-51 Identities = 119/396 (30%), Positives = 178/396 (44%), Gaps = 36/396 (9%) Query: 19 AAQRVRDLRSKGI-----------DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAV 67 A R L GI VL L GE D P+ ++ A A+ GET YT Sbjct: 1 ARPAARALPESGIREVANAGRGREGVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHN 60 Query: 68 AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVS 127 GI LREA+ R + + ++I V + + A A V GDEV+ P W + Sbjct: 61 LGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPN 120 Query: 128 YPDMVALCGGIPVFVDTQ-QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRL 186 + G V V + + ++L AITP+T+ LF+NSP+NP+G S++ L Sbjct: 121 LVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDL 180 Query: 187 RALADVLVRNPHVHIISDDIYEHIVY----RNCQFSNIVNVEPSLYERTLVVNGVSKAYA 242 RA+ R + I++D++YE + Y R F +I + +R + VN SK +A Sbjct: 181 RAILA-HCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPD----DRIIFVNSFSKNWA 235 Query: 243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRR 302 MTG R+G+ +L + + L TS Q AAV AL+ +DFV R Sbjct: 236 MTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSR 295 Query: 303 DLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTD-LDFVNGLLEIEKVA 361 D V L+ +PG+ PDGA Y + TD L L++ + Sbjct: 296 DHLVDALRALPGVEVAKPDGAMYAFFRIPG------------VTDSLALAKRLVDEAGLG 343 Query: 362 VVQGSSFGHGPS--IRISYAVSDAILEEACVRIKRF 395 + G++FG G +R +A A L+EA R++RF Sbjct: 344 LAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRF 379 >gnl|CDD|168313 PRK05957, PRK05957, aspartate aminotransferase; Provisional. Length = 389 Score = 182 bits (463), Expect = 2e-46 Identities = 113/363 (31%), Positives = 182/363 (50%), Gaps = 41/363 (11%) Query: 46 PENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI 104 P A+ + E KY AV GI PL EAI +K ++DN + ++Q IV T ++ Sbjct: 42 PPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMA 101 Query: 105 F-NALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP 163 F NA++A + GDE+++ PY+ ++ + + G P+ V T DDN+Q+ PE +EQAITP Sbjct: 102 FMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPT--DDNYQLQPEAIEQAITP 159 Query: 164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ-FS--NI 220 KT+ + SP+NP+GVVY + LRA+ + + H ISD+ YE+ Y + FS +I Sbjct: 160 KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYH-ISDEAYEYFTYDGVKHFSPGSI 218 Query: 221 VNVEP---SLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACS--I 275 SLY +SKAY RIGY + L+++ + + Q T C + Sbjct: 219 PGSGNHTISLYS-------LSKAYGFASWRIGYMVIPIHLLEA--IKKIQDTILICPPVV 269 Query: 276 AQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI-PDGAFY--LYPSCQD 332 +Q+AA+ AL + + + R + + L + + +GAFY L + Sbjct: 270 SQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTD- 328 Query: 333 LIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--HGPSIRISY-AVSDAILEEAC 389 D + V L+ +VAV+ G++FG +G +RI+Y A+ A +E Sbjct: 329 ------------LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGI 376 Query: 390 VRI 392 R+ Sbjct: 377 ERL 379 >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional. Length = 397 Score = 181 bits (463), Expect = 2e-46 Identities = 93/305 (30%), Positives = 165/305 (54%), Gaps = 17/305 (5%) Query: 29 KGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLH 88 +GI V L G+PD PE V + ++ + Y+ GI LREA + +++ + Sbjct: 28 RGIKVYHLNIGQPDIKTPE-VFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKK-WGID 85 Query: 89 YTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDD 148 D+I++ G I A+MA + GDE+L+P P++ +Y G V V T+ ++ Sbjct: 86 VEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEE 145 Query: 149 NFQV-SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY 207 F + S E++E+ ITPKTK + +++P NP+GVVY++ L LA+ + + + +ISD++Y Sbjct: 146 GFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAE-IAKKHDLFLISDEVY 204 Query: 208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI---KSMI-- 262 VY ++++ +++E L +R ++++ VSK Y+ G RIG LI K +I Sbjct: 205 REFVYDGLKYTSALSLE-GLEDRVIIIDSVSKRYSACGARIG------CLISKNKELIAA 257 Query: 263 VLQGQQTSGACS-IAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD 321 ++ Q + + Q A L+ P+ + R+ ++ RRD+ +L +PG+ P Sbjct: 258 AMKLCQARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPK 317 Query: 322 GAFYL 326 GAFY+ Sbjct: 318 GAFYI 322 >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated. Length = 388 Score = 180 bits (458), Expect = 7e-46 Identities = 130/404 (32%), Positives = 197/404 (48%), Gaps = 32/404 (7%) Query: 4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK 63 ++ + ++P + A+ + L G D++ + GEPDF PE V A RA+ RG T+ Sbjct: 3 LAARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQ 62 Query: 64 YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRP 123 YT+ G++PLREAI + R L ++I+V GA + A +A V GDEVL+P P Sbjct: 63 YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP 122 Query: 124 YWVSYP---DMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180 SYP VA G PV V + + FQ++ +E A +T+ + L SPSNP+G Sbjct: 123 ---SYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTS 179 Query: 181 YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA 240 + + LR + + VR I D+IY+ + Y S + SL + + +N SK Sbjct: 180 IAPDELRRIVEA-VRARGGFTIVDEIYQGLSYDAAPVSAL-----SLGDDVITINSFSKY 233 Query: 241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVV--NNRKIF 298 + MTG R+G+ +L+ + L A ++AQ AA+ A P + R F Sbjct: 234 FNMTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAAL-ACFEPDTLAIYERRRAEF 292 Query: 299 EYRRDLCVAQLQG----VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL 354 + RRD V L+ VP ++PDGAFY+Y C+ + + + Sbjct: 293 KRRRDFIVPALESLGFKVP----VMPDGAFYVYADCRGVAHPAAGDSA------ALTQAM 342 Query: 355 LEIEKVAVVQGSSFG-HGPS--IRISYAVSDAILEEACVRIKRF 395 L V +V G FG H P IR+SYA S + LEEA R+ + Sbjct: 343 LHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKL 386 >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional. Length = 387 Score = 176 bits (449), Expect = 8e-45 Identities = 111/401 (27%), Positives = 173/401 (43%), Gaps = 30/401 (7%) Query: 3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET 62 S R ++P + R +L + G DV+ L GEPDF E + A A+ G T Sbjct: 4 GYSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHT 63 Query: 63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPR 122 +YTA G+ LREAI + + + ++I+V G + A V+ G L+ Sbjct: 64 RYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLAD 123 Query: 123 PYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYS 182 P + + L G V D +Q++P +E+ T + SP+NP+G + S Sbjct: 124 PGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLS 183 Query: 183 QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA 242 ++ L AL+ +R H++ D+IY + Y ++++ V+ + V+N SK + Sbjct: 184 RDELAALSQA-LRARGGHLVVDEIYHGLTY-GVDAASVLEVDDDAF----VLNSFSKYFG 237 Query: 243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVV--NNRKIFEY 300 MTG R+G+ + + + L A + AQ AA+ P+ + R F Sbjct: 238 MTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFE-PETLAILEARRAEFAR 296 Query: 301 RRDLCVAQLQ----GVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLE 356 RRD + L+ G+ + P GAFYLY GD F LE Sbjct: 297 RRDFLLPALRELGFGIA----VEPQGAFYLYADISAF------GGDAFA----FCRHFLE 342 Query: 357 IEKVAVVQGSSFGH---GPSIRISYAVSDAILEEACVRIKR 394 E VA G FG G +R +Y S L+EA RI R Sbjct: 343 TEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIAR 383 >gnl|CDD|181114 PRK07777, PRK07777, aminotransferase; Validated. Length = 387 Score = 173 bits (440), Expect = 8e-44 Identities = 115/395 (29%), Positives = 181/395 (45%), Gaps = 25/395 (6%) Query: 9 RRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVA 68 R++P T + A+ + + L G PD D P + A A+ G +Y Sbjct: 4 SRLRPFGTTIFAEMSA--LAVRTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGP 61 Query: 69 GISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVS 127 GI LR AI + RR L Y D +++V GA I A++ V GDEVL+ PY+ S Sbjct: 62 GIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDS 121 Query: 128 YPDMVALCGGIPVFVDTQQDDN-FQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRL 186 Y ++A+ G V V D F + + L A+TP+T+ L +NSP NP+G V + L Sbjct: 122 YAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAEL 181 Query: 187 RALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL 246 A+A+ L + +I+D++YEH+V+ + + + P + ERT+ ++ +K + +TG Sbjct: 182 AAIAE-LAVEHDLLVITDEVYEHLVFDGARHLPLATL-PGMRERTVTISSAAKTFNVTGW 239 Query: 247 RIGYAAGALSLIKSMIVLQGQQ--TSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDL 304 +IG+A G LI + V +Q T + Q A AL+ +V R + +RD Sbjct: 240 KIGWACGPAPLIAA--VRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDR 297 Query: 305 CVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQ 364 A L G G ++L C D P G +F L E VA + Sbjct: 298 LAAGLAEA-GFEVHDSAGTYFL---CADP----RPLGY--DDGTEFCRALPERVGVAAIP 347 Query: 365 GSSF----GHG-PSIRISYAVSDAILEEACVRIKR 394 S F +R ++ D L+EA R++ Sbjct: 348 MSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRA 382 >gnl|CDD|163315 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 Score = 172 bits (437), Expect = 2e-43 Identities = 114/379 (30%), Positives = 188/379 (49%), Gaps = 18/379 (4%) Query: 21 QRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVE 79 ++ + +++G+DV+ L G+PD P+++ A+ +A E E +Y + G+ R+A+ + Sbjct: 19 KKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVAD 78 Query: 80 KFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGI 138 ++R + + +++ G+K I + +A VN GD VL+P P + Y GG Sbjct: 79 WYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGE 138 Query: 139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH 198 P + ++++ F + + + I K K +F+N P+NP+G V + L + + + Sbjct: 139 PYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVE-FAKEYN 197 Query: 199 VHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI 258 + + D+ Y I + + + + V + + + +SK Y MTG RIG A G LI Sbjct: 198 IIVCHDNAYSEITFDGYKAPSFLEV-DGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLI 256 Query: 259 KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318 + ++ SG Q+AA+ ALNGPQD V RKI++ RRDL + L+ + GI Sbjct: 257 AGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-GIDVE 315 Query: 319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRI 376 P FY++ P G T +F LLE V V G FG +G IRI Sbjct: 316 KPKATFYVW--------VPVPEG---YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRI 364 Query: 377 SYAVSDAILEEACVRIKRF 395 S V D LEEA RIK+ Sbjct: 365 SLTVPDERLEEAVARIKKL 383 >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated. Length = 386 Score = 167 bits (425), Expect = 5e-42 Identities = 114/375 (30%), Positives = 176/375 (46%), Gaps = 40/375 (10%) Query: 36 LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QI 94 L+ G PDFD P + A+ AM G +Y + G++ LREAI K R Y +D +I Sbjct: 35 LSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEI 94 Query: 95 IVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSP 154 V GA +F A++A V GDEV++ P + SY + L GG V V Q +F+V Sbjct: 95 TVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRV-ALQPPDFRVDW 153 Query: 155 EKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN 214 ++ AI+P+T+ + LN+P NPSG V+S +RAL L+ ++++SD++YEHIV+ Sbjct: 154 QRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQ-LIAGTDIYVLSDEVYEHIVFDG 212 Query: 215 CQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG--ALS--LIKSMIVLQGQQTS 270 ++ V P L ER VV+ K Y +TG ++GY ALS K V Q + Sbjct: 213 AGHAS-VLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRK---VHQYNTFT 268 Query: 271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG-------VPGIRYMIPDGA 323 + AQ A + L + + ++ +RD A L G + + D Sbjct: 269 V-NTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVD-- 325 Query: 324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS----IRISYA 379 Y + DL D++F L VA + S F P +R+ +A Sbjct: 326 ---YSAISDL------------DDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA 370 Query: 380 VSDAILEEACVRIKR 394 + L+ A R+ + Sbjct: 371 KQEETLDAAAERLCQ 385 >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional. Length = 384 Score = 164 bits (417), Expect = 3e-41 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%) Query: 32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTS 91 D L L+ G P+F + V RAM G +Y +AGI+ LREA+ EK R Y Sbjct: 30 DALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDP 89 Query: 92 D-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF 150 ++ V A ++ A+ A V+ GDEV+ P + SY +V L G PV + +D F Sbjct: 90 ASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPED-F 148 Query: 151 QVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHI 210 +V+ +++ AITP+T+ + +N+P NPS V+S L LA L RN + I+SD++YEH+ Sbjct: 149 RVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLA-QLTRNTDIVILSDEVYEHV 207 Query: 211 VYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS 270 V+ + ++ L ER+++V+ K+Y +TG R+GY L+ + + Sbjct: 208 VFDGARHHSMAR-HRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVF 266 Query: 271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSC 330 A + Q A EAL P + + ++ +RDL +L G F L PS Sbjct: 267 SADTPMQHAFAEALAEPASY-LGLGAFYQRKRDLLARELAGSR----------FELLPSE 315 Query: 331 QDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF----GHGPSIRISYAVSDAILE 386 +D DFV L+ +VA + S+F IR+S++ DA L Sbjct: 316 GSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLV 375 Query: 387 EACVRIKRF 395 E R+ Sbjct: 376 EGARRLCSL 384 >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated. Length = 404 Score = 163 bits (414), Expect = 1e-40 Identities = 118/394 (29%), Positives = 189/394 (47%), Gaps = 35/394 (8%) Query: 20 AQRVRDLRSKGIDVLCLTAGEP---DFDMPENVKYAVVRAMERGETKYTAVAGISPLREA 76 + + L +G +L L G P F+ P+ + V+R + + Y+ G+ R+A Sbjct: 22 LKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQ-GYSDSKGLFSARKA 80 Query: 77 IVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYP---DMVA 133 I++ +++ D I +G G +I A+ A +N GDEVL+P P YP V+ Sbjct: 81 IMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAP---DYPLWTAAVS 137 Query: 134 LCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVL 193 L GG PV ++ + + + ITP+TK + + +P+NP+G VYS+ L + ++ Sbjct: 138 LSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIA 197 Query: 194 VRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA- 252 ++ ++ I +D+IY+ I+Y +I ++ P L + NG+SKAY + G R+G+ Sbjct: 198 RQH-NLIIFADEIYDKILYDGAVHISIASLAPDLL--CVTFNGLSKAYRVAGFRVGWMVL 254 Query: 253 -GALSLIKSMIVLQGQQTSGA---CS--IAQWAAVEALNGPQ---DFVVNNRKIFEYRRD 303 G K I +G + C+ AQ A AL G Q + ++ +++E +RD Sbjct: 255 SGPKKHAKGYI--EGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYE-QRD 311 Query: 304 LCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV 363 L +PG+ + P GA Y +P L K P I D FV LL EKV +V Sbjct: 312 RAWELLNAIPGVSCVKPKGALYAFPK---LDPKVYP----IHDDEQFVLDLLLQEKVLLV 364 Query: 364 QGSSFG--HGPSIRISYAVSDAILEEACVRIKRF 395 QG+ F RI LEEA RI RF Sbjct: 365 QGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRF 398 >gnl|CDD|130332 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 Score = 159 bits (404), Expect = 1e-39 Identities = 109/416 (26%), Positives = 187/416 (44%), Gaps = 47/416 (11%) Query: 10 RVQPSA-TLVAAQRVRDLRSKGID-------VLCLTAGEP----DFDMPENVKYAVVRAM 57 + S +R + ++ L+ G+P + + AV A+ Sbjct: 2 NFKGSDHAKKTVNPIRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDAL 61 Query: 58 ERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGD 116 G+ Y G REA+ E D T+D +++ +G I + A N G Sbjct: 62 RSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGA 121 Query: 117 EVLIPRPYWVSYPDMVALCG--GIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSP 173 +L+PRP +P G+ V D + ++++ + LE KT + + +P Sbjct: 122 NILVPRP---GFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINP 178 Query: 174 SNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF------SNIVNVEPSL 227 SNP G V+S++ L+ +A+V R + II+D+IY H+V+ + F ++IV V Sbjct: 179 SNPCGSVFSRDHLQKIAEV-ARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPV---- 233 Query: 228 YERTLVVNGVSKAYAMTGLRIGYAA-----GAL-SLIKSMIVLQGQQTSGACSIAQWAAV 281 L + G+SK + + G R+G+ G + + Q+ G +I Q A Sbjct: 234 ----LSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALP 289 Query: 282 EAL-NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPS 340 + L N PQ+F + + +LC +L+ +PG+ P+GA YL ++ + Sbjct: 290 DILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYL------MVKLELEL 343 Query: 341 GDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFC 396 I+ D+DF L+ E V + GS+FG +RI+ V +++LEEAC RIK FC Sbjct: 344 FPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFC 399 >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional. Length = 385 Score = 157 bits (400), Expect = 4e-39 Identities = 112/379 (29%), Positives = 185/379 (48%), Gaps = 20/379 (5%) Query: 21 QRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVE 79 ++ + ++G+DV+ L G+PD P+++ A+ +A+E E +Y + G+ R+A+ + Sbjct: 21 KKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVAD 80 Query: 80 --KFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGG 137 K R +L ++I G+K I + +A VN GD VL+P P + Y GG Sbjct: 81 WYKRRFGVELD-PETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGG 139 Query: 138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNP 197 P F+ ++++ F + + + + K K +F+N P+NP+G V + D + Sbjct: 140 EPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKY- 198 Query: 198 HVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL 257 + + D Y I Y + + + V P + + + +SK Y MTG RIG+A G L Sbjct: 199 DIIVCHDAAYSEIAYDGYKPPSFLEV-PGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADL 257 Query: 258 IKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY 317 I + ++ SG Q A + ALNGPQ+ V RKI++ RRD+ V L+ + G+ Sbjct: 258 IAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-GLEV 316 Query: 318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IR 375 P FY++ P G T +F LL+ V V G+ FG +G R Sbjct: 317 EPPKATFYVW--------APVPKG---YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFR 365 Query: 376 ISYAVSDAILEEACVRIKR 394 I+ V D +EEA RIK+ Sbjct: 366 IALTVPDERIEEAVERIKK 384 >gnl|CDD|130331 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. Length = 401 Score = 154 bits (390), Expect = 4e-38 Identities = 101/379 (26%), Positives = 176/379 (46%), Gaps = 29/379 (7%) Query: 33 VLCLTAGEPDFD----MPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRR-DND 86 ++ L+ G+P V A+ +++ G+ Y G REAI + D Sbjct: 33 MIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGP 92 Query: 87 LHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFV---D 143 + +D +++ +G H I + A N G +L+PRP +P L + + V + Sbjct: 93 I--EADDVVLCSGCSHAIEMCIAALANAGQNILVPRP---GFPLYETLAESMGIEVKLYN 147 Query: 144 TQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIIS 203 D ++++ ++LE I KT L +N+PSNP G V+S+ L + V R + II+ Sbjct: 148 LLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQ-CLPIIA 206 Query: 204 DDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA-----GALSLI 258 D+IY +V+ F + ++ ++ L G++K + + G R+G+ G L I Sbjct: 207 DEIYGDMVFSGATFEPLASLSSTV--PILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDI 264 Query: 259 KSMIVLQGQQTSGACSIAQWAAVEAL-NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY 317 + +V Q+ G C+I Q A L PQ++ + E LC L VPG+R Sbjct: 265 RDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRP 324 Query: 318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS 377 ++P GA Y+ ++G + + D++F L+ + V + GS F + R+ Sbjct: 325 VMPSGAMYM------MVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVV 378 Query: 378 YAVSDAILEEACVRIKRFC 396 V ++EEAC RI+ FC Sbjct: 379 LTVPVVMMEEACSRIQEFC 397 >gnl|CDD|177770 PLN00175, PLN00175, aminotransferase family protein; Provisional. Length = 413 Score = 154 bits (390), Expect = 5e-38 Identities = 97/364 (26%), Positives = 179/364 (49%), Gaps = 20/364 (5%) Query: 36 LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QI 94 L G P+FD P+ VK A ++A+ G+ +Y G+ L AI E+F++D L + ++ Sbjct: 59 LGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEV 118 Query: 95 IVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSP 154 V +G I ++ +N GDEV++ P++ SY +++ G V T + +F V Sbjct: 119 TVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTV-TLRPPDFAVPE 177 Query: 155 EKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN 214 ++L+ A T KT+ + +N+P NP+G ++++ L +A + N V +D++Y+ + + Sbjct: 178 DELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAFEG 236 Query: 215 CQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACS 274 S + P +YERT+ +N + K +++TG +IG+A L + T + Sbjct: 237 DHIS--MASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATAT 294 Query: 275 IAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLI 334 QWAAV AL P+ + ++ + ++D+ V L+ V G + G ++ ++ Sbjct: 295 PMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYF-------VM 346 Query: 335 GKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS-----IRISYAVSDAILEEAC 389 +P G D+ F L+E VA + S F P +R ++ + L A Sbjct: 347 VDHTPFG--FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAV 404 Query: 390 VRIK 393 R+K Sbjct: 405 ERMK 408 >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional. Length = 387 Score = 147 bits (374), Expect = 4e-36 Identities = 101/373 (27%), Positives = 177/373 (47%), Gaps = 25/373 (6%) Query: 36 LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD--- 92 L G PD PE+V+ A A+ G +Y + G+ LR+A+ + R L D Sbjct: 31 LGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGL--DLDPET 88 Query: 93 QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQV 152 +++V +GA + AL+A V GDEV++ +P + +Y ++ GG+P V + +++ Sbjct: 89 EVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPH-WRL 147 Query: 153 SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVY 212 L A +P+TK + LN+P NP+G V+ + L LA+ R+ I D+++EH+V+ Sbjct: 148 PRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRH-DAVAICDEVWEHVVF 206 Query: 213 RNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQ--TS 270 + ++ + P + ERT+ + K +++TG ++G+ A L++ ++ + Q T Sbjct: 207 DGRRHIPLMTL-PGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLR--VLAKAHQFLTF 263 Query: 271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSC 330 Q A L P D+ R RD A L+ + G + G ++L Sbjct: 264 TTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFL---T 319 Query: 331 QDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--GHGPS--IRISYAVSDAILE 386 DL +P G + D+ F L+E VA + S+F + +R +A DA L+ Sbjct: 320 VDL----APLG-LAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLD 374 Query: 387 EACVRIKRFCHSL 399 EA R+ Sbjct: 375 EAVERLAAARRRR 387 >gnl|CDD|183994 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional. Length = 517 Score = 141 bits (358), Expect = 3e-34 Identities = 108/382 (28%), Positives = 178/382 (46%), Gaps = 31/382 (8%) Query: 30 GIDVLCLTAGEP---DFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDND 86 G +L L G P F P+ V Y + + + E Y+ G+ R+AI++ + Sbjct: 145 GTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTE-GYSDSKGLFSARKAIMQYAQLKGL 203 Query: 87 LHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQ 146 + D I G G +I ++ A ++ GDEVLIP P + + V L GG V + Sbjct: 204 PNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDE 263 Query: 147 DDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI 206 + + + IT +TK + + +P+NP+G +Y + L+ + D + R + I SD+I Sbjct: 264 QSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVD-IAREHQLIIFSDEI 322 Query: 207 YEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA--AGALSLIKSMIV- 263 Y+ +V + ++I ++ P L+ + +G+SK++ + G RIG+ +G + K I Sbjct: 323 YDRLVMDGLEHTSIASLAPDLF--CVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEG 380 Query: 264 LQGQQTSGACS--IAQWAAVEALNGPQ---DFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318 L CS AQ AL G Q D++V +++E +R+L L +PGI + Sbjct: 381 LNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYE-QRELVYNALNAIPGISAV 439 Query: 319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF-----GHGPS 373 P AFY++P K I D F LL +KV +VQG+ F H Sbjct: 440 KPKAAFYIFP-------KIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDH--- 489 Query: 374 IRISYAVSDAILEEACVRIKRF 395 R+ Y LE+A R+ F Sbjct: 490 FRVVYLPRLEDLEDAMDRLADF 511 >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional. Length = 399 Score = 128 bits (322), Expect = 4e-30 Identities = 86/376 (22%), Positives = 171/376 (45%), Gaps = 20/376 (5%) Query: 21 QRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK 80 + K ID L+ G PD + V+ +V + E+ ++GI EA+ E Sbjct: 25 KEKIAAGHKMID---LSIGNPDMPPADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEY 81 Query: 81 FRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIP 139 + +++ +D ++++ G++ + + M N GD +L+P P + +Y + + G Sbjct: 82 YNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATS 141 Query: 140 VFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHV 199 ++ +++++F E + + I K K + LN P NP + ++ + + ++ ++ Sbjct: 142 YYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKH-NI 200 Query: 200 HIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIK 259 ++ D Y + + + ++V P E + +N +SK+Y++ G RIGY G +++ Sbjct: 201 IVVHDFAYAEFYFDGNKPISFLSV-PGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVR 259 Query: 260 SMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI 319 ++ + G Q AA AL F NR I++ RRD V + G Sbjct: 260 ALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-GWNVDK 318 Query: 320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRIS 377 P G+ +++ + P G T L F L++ V V G +FG HG +RI+ Sbjct: 319 PAGSMFVW--------AEIPKG---WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIA 367 Query: 378 YAVSDAILEEACVRIK 393 + +L++A I+ Sbjct: 368 LVQDEEVLQQAVENIR 383 >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional. Length = 412 Score = 124 bits (314), Expect = 3e-29 Identities = 90/381 (23%), Positives = 165/381 (43%), Gaps = 28/381 (7%) Query: 34 LCLTAGEPDFD----MPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRD---- 84 + L+ G+P D P A+V A++ E Y G REA+ +R Sbjct: 36 IKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHK 95 Query: 85 --NDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFV 142 D +++ +G H I AL A + GD +L+P P + Y + G F Sbjct: 96 ESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFY 155 Query: 143 DTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHII 202 + + + +++ +++ + + +TK L + +PSNP G +S+ + + + + +I Sbjct: 156 NCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRL-CEELRLPLI 214 Query: 203 SDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA------AGALS 256 SD+IY +V+ F+++ + + ++ +++ G +K + G R+G+ Sbjct: 215 SDEIYAGMVFNGATFTSVADFDTTV--PRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGD 272 Query: 257 LIKSMIVLQGQQTSGACSIAQWAAVEAL-NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGI 315 + M L G G CS+ Q A EAL N PQ+ + E + + G+ Sbjct: 273 FLDGMKRL-GMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGL 331 Query: 316 RYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIR 375 +P G+ +L + I++D++F LLE E V V+ G F R Sbjct: 332 SPTMPRGSMFL------MSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTR 385 Query: 376 ISYAVSDAILEEACVRIKRFC 396 ++ + +L EA RIK FC Sbjct: 386 LTISRPVEVLREAVERIKAFC 406 >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed. Length = 389 Score = 117 bits (295), Expect = 5e-27 Identities = 114/418 (27%), Positives = 187/418 (44%), Gaps = 57/418 (13%) Query: 1 MVF-ISNILRRV--QPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAM 57 M F S +L+++ Q A+LV +V ++G DV+ L G PD PE++ A+ A Sbjct: 1 MEFEPSELLKQLPKQFFASLV--AKVNKKVAEGHDVINLGQGNPDQPTPEHIVEALQEAA 58 Query: 58 ERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMG 115 E KY+ G L+EA + ++R+ + + ++ + G K + +N G Sbjct: 59 ENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPG 118 Query: 116 DEVLIPRPYWVSYPDM---VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNS 172 D +L+P P YPD VAL + ++NF K+ + + K K ++LN Sbjct: 119 DTILVPDP---GYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNY 175 Query: 173 PSNPSGVVYSQ---NRLRALADVLVRNPHVHIISDDIYEHIVY---RNCQF-----SNIV 221 P+NP+G V ++ A A + ++ ++ D Y I + + F + V Sbjct: 176 PNNPTGAVATKAFFEETVAFA----KKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDV 231 Query: 222 NVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSI---AQW 278 +E LY TL SK + M G R+ +A G S+I+++ +LQ S+ Q Sbjct: 232 GIE--LY--TL-----SKTFNMAGWRVAFAVGNESVIEAINLLQDHLF---VSLFGAIQD 279 Query: 279 AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKS 338 AA+EAL Q V +E RR+ ++ + + G P G+F+ + Sbjct: 280 AAIEALLSDQSCVAELVARYESRRNAFISACREI-GWEVDAPKGSFFAW--------MPV 330 Query: 339 PSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRISYAVSDAILEEACVRIKR 394 P G T F + LLE VAV G+ FG HG +R+ + L EA RI + Sbjct: 331 PKG---YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGK 385 >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated. Length = 395 Score = 114 bits (288), Expect = 3e-26 Identities = 97/358 (27%), Positives = 162/358 (45%), Gaps = 37/358 (10%) Query: 27 RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDN 85 R +G D++ + G PD P ++ + +R +T Y+ GI LR AI ++ Sbjct: 25 RRRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRY 84 Query: 86 DLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGG----IPV 140 D+ + + IV G+K + + ++AT++ GD VL+P P + + + G +P+ Sbjct: 85 DVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPL 144 Query: 141 FVDTQQDDNFQVSPEKLEQAIT---PKTKWLFLNSPSNPSG--VVYSQ-NRLRALADVLV 194 D F +LE+AI PK K + L PSNP+ V ++ ALA Sbjct: 145 VEGV---DFF----NELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALA---- 193 Query: 195 RNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA 254 + V ++ D Y IVY + +I+ V P + + +SK+Y M G RIG+ G Sbjct: 194 KRYDVLVVHDLAYADIVYDGWKAPSIMQV-PGAKDVAVEFFTLSKSYNMAGWRIGFMVGN 252 Query: 255 LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPG 314 L+ ++ ++ G + Q AA+ AL G Q V + + ++ RRD+ V +G+ Sbjct: 253 PELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLV---KGLHE 309 Query: 315 IRYMI--PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH 370 +M+ P + Y++ K P L+F LL KV V G FG Sbjct: 310 AGWMVEMPKASMYVW--------AKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGD 359 >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 Score = 113 bits (285), Expect = 6e-26 Identities = 100/363 (27%), Positives = 166/363 (45%), Gaps = 26/363 (7%) Query: 38 AGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QIIV 96 G+P P ++ A++ A+ ++Y + G LREAI F R + D Q++ Sbjct: 7 TGDPKEPTPPFIRKALIDAVPE-VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP 65 Query: 97 GTGAKHVIFNALMATVNMGDE---VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVS 153 G+K IF+ + ++ ++ V+ P + Y GG P V +++D F + Sbjct: 66 SAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLR 125 Query: 154 PEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYR 213 EK+E++I +TK +++N P NP+G ++ L+ + R + + SD+ Y I + Sbjct: 126 LEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIA-MCREHGIILCSDECYTEIYFG 184 Query: 214 NCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGAC 273 S + E + E L + +SK MTG R G+ AG LI + L+ + Sbjct: 185 EPPHSAL---EVGI-ENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASP 240 Query: 274 SIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDL 333 Q AA A + + V+ RKIF+ +RDL + V G+ Y+ PD FYL+ Sbjct: 241 DFVQAAAKAAWSD-DNHVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATFYLW------ 292 Query: 334 IGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS--IRISYAVSDAILEEACVR 391 K PSG D+ LLE + V G +FG G +R++ + EEA Sbjct: 293 --VKVPSG---IDAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRL 346 Query: 392 IKR 394 +R Sbjct: 347 WER 349 >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated. Length = 405 Score = 108 bits (273), Expect = 2e-24 Identities = 104/377 (27%), Positives = 167/377 (44%), Gaps = 21/377 (5%) Query: 26 LRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRD 84 R+ G D++ L G PD P+++ + + T +Y+A GI LR A + R Sbjct: 25 ARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARR 84 Query: 85 NDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV---ALCGGIPV 140 + D Q++ G+K N A GD +L P P SYP + GG+ Sbjct: 85 FGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNP---SYPIHAFGFIMAGGVIR 141 Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVH 200 V + D+ F + E+ + PK L +N PSNP+ V + + + + + Sbjct: 142 SVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVA-FAKKHDII 200 Query: 201 IISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKS 260 I+SD Y I + +++ V P + T+ +SK ++M G R+G+A G LI + Sbjct: 201 ILSDLAYSEIYFDGNPPPSVLQV-PGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAA 259 Query: 261 MIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP 320 + ++ GA + Q AA ALNGPQD + R++++ RRD+ V + IP Sbjct: 260 LTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAG---WDIP 316 Query: 321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRISY 378 P+ P L+F L+E VAV G FG HG +RI+ Sbjct: 317 P------PAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIAL 370 Query: 379 AVSDAILEEACVRIKRF 395 ++ + +A IKRF Sbjct: 371 VENEQRIRQAARNIKRF 387 >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional. Length = 386 Score = 105 bits (265), Expect = 2e-23 Identities = 87/344 (25%), Positives = 151/344 (43%), Gaps = 30/344 (8%) Query: 62 TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIP 121 Y V G+ LREA + R + +Q+ + +G + A++ GDEV++P Sbjct: 61 HLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILP 120 Query: 122 RPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVY 181 P++ ++ + + G PV++ + P E ITP+T+ + L +P+NP+GVVY Sbjct: 121 LPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVY 180 Query: 182 SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ----FSNIVNVEPSLYERTLV-VNG 236 L L D+ R+ + +I D+ Y F+ +P ++ TLV + Sbjct: 181 PPELLHELYDLARRH-GIALILDETYRDFDSGGGAPHDLFA-----DPD-WDDTLVHLYS 233 Query: 237 VSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACS--IAQWAAVEALNGPQDFVVNN 294 SK+YA+TG R+G + + I + + T C+ I Q A L D+ N Sbjct: 234 FSKSYALTGHRVGAVVASPARIAE--IEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGN 291 Query: 295 RKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL 354 R RRD A +PG ++ GA++ Y + P D R + L Sbjct: 292 RAEIARRRDAFRAVFARLPGWE-LLASGAYFAY--------VRHPFPD--RPSREVARRL 340 Query: 355 LEIEKVAVVQGSSFGHG--PSIRISYA-VSDAILEEACVRIKRF 395 + + + G+ FG G +R+++A A + E R++ F Sbjct: 341 AKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 >gnl|CDD|181511 PRK08636, PRK08636, aspartate aminotransferase; Provisional. Length = 403 Score = 105 bits (264), Expect = 2e-23 Identities = 103/399 (25%), Positives = 180/399 (45%), Gaps = 50/399 (12%) Query: 27 RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRDN 85 R G D++ + G PD P+++ + + ++ +T Y+ GI LR AI ++R Sbjct: 29 RRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKY 88 Query: 86 DLHYTSDQIIVGT-GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDT 144 ++ + +V T G+K + + A N GD ++P P + + L GG + Sbjct: 89 NVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPL 148 Query: 145 QQDDNFQVSPEK----LEQAI---TPKTKWLFLNSPSNPSGVVYSQN---RLRALADVLV 194 + +++F++ ++ LE+A+ +PK K++ +N P NP+ ++ RL ALA Sbjct: 149 EYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALA---- 204 Query: 195 RNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNG--VSKAYAMTGLRIGYAA 252 + +IISD Y I + + +I+ VE + + + V +SK+Y M G R+G+ Sbjct: 205 KKERFYIISDIAYADITFDGYKTPSILEVEGA---KDVAVESYTLSKSYNMAGWRVGFVV 261 Query: 253 G------ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCV 306 G AL IKS + G + Q AA AL+G Q V R+ + RRD+ + Sbjct: 262 GNKKLVGALKKIKSWL------DYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLI 315 Query: 307 AQLQGVPGIRYMIPDGAFYLY---PSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV 363 G P + +++ P +G L+F LL KVAV Sbjct: 316 ESFANA-GWELQKPRASMFVWAKIPEPARHLGS-----------LEFSKQLLTEAKVAVS 363 Query: 364 QGSSFGHGPS--IRISYAVSDAILEEACVRIKRFCHSLQ 400 G FG +RI+ ++ + +A IK+F L+ Sbjct: 364 PGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLKELE 402 >gnl|CDD|163314 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 Score = 104 bits (262), Expect = 4e-23 Identities = 96/386 (24%), Positives = 160/386 (41%), Gaps = 38/386 (9%) Query: 30 GIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHY 89 + L+ GEP P V A+ + G + Y G+ LR+AI R DL Sbjct: 27 SKPPIALSIGEPKHPTPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPT 85 Query: 90 TSD---QIIVGTGAKHVIFNALMATVNMGDE--VLIPRPYWVSYPDMVALCGGIPVFVDT 144 D ++ G + +F A +N G V++P P++ Y L G P F++ Sbjct: 86 GVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNC 145 Query: 145 QQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD 204 ++ F + + +++ + + LF+ SP NP+G V S + L+ L ++ + + I SD Sbjct: 146 TAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFI-IASD 204 Query: 205 DIYEHIVYRNCQFSNIVNVEPSL------YERTLVVNGVSKAYAMTGLRIGYAAGALSLI 258 + Y + Y + ++ + + R LV + +SK + GLR G+ AG ++ Sbjct: 205 ECYSEL-YFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEIL 263 Query: 259 KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318 K+ + + A I A A + V NR ++ + + L V + Sbjct: 264 KAFLRYRTYHGC-AMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQVLDLE-- 320 Query: 319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS-----SFGHGPS 373 +PD FYL+P K P GD D F L E E V V+ G + G P Sbjct: 321 LPDAGFYLWP--------KVP-GD----DEAFARALYEEENVTVLPGRFLAREAEGVNPG 367 Query: 374 ---IRISYAVSDAILEEACVRIKRFC 396 +RI+ EA RI+ F Sbjct: 368 EGRVRIALVAPLEECVEAAERIRSFI 393 >gnl|CDD|180469 PRK06207, PRK06207, aspartate aminotransferase; Provisional. Length = 405 Score = 102 bits (257), Expect = 1e-22 Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 32/346 (9%) Query: 60 GETKYTAVAGISPLREAIVEKFRRDNDLHYT------SDQIIVGTGAKHVIFNALMATVN 113 G YT G + +RE + + +T +D++I+ G + +F A+ ATV Sbjct: 70 GVQAYTEYRGDADIRELLAARLA-----AFTGAPVDAADELIITPGTQGALFLAVAATVA 124 Query: 114 MGDEVLIPRPYWVSYPDMVALCGG--IPVFVD-TQQDDNFQVSPEKLEQAITPKTKWLFL 170 GD+V I +P + + +V G +PV +D D + ++LE+A + Sbjct: 125 RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLF 184 Query: 171 NSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNI--VNVEPSLY 228 ++P+NP+GVVYS + +A L R +I D +Y ++Y ++++ + ++P Sbjct: 185 SNPNNPAGVVYSAEEIAQIAA-LARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDP--- 240 Query: 229 ERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ 288 E + + G SK +++G R+G A G+ ++I M LQ + A +Q + P Sbjct: 241 ENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD 300 Query: 289 DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDL 348 ++ + + RD + L+GV G+ P YL+P + P V + Sbjct: 301 GWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFP--------RLPRLAV--SLH 350 Query: 349 DFVNGLLEIEKVAVVQGSSFG--HGPSIRISYAVSDAILEEACVRI 392 DFV L V V G+ F SIR++++ A A RI Sbjct: 351 DFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERI 396 >gnl|CDD|162223 TIGR01141, hisC, histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. Length = 346 Score = 93.5 bits (233), Expect = 9e-20 Identities = 81/316 (25%), Positives = 140/316 (44%), Gaps = 31/316 (9%) Query: 21 QRVRDL------RSKGID-VLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPL 73 +++L R G V+ L + E F P K A+ ++ +Y L Sbjct: 2 PDIKNLSPYQPARELGGKEVIKLNSNENPFGPPPKAKEALRAEADKL-HRYPDPDPAE-L 59 Query: 74 REAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA 133 ++A+ + + D + QI++G G+ +I + A + GD VL+P P + Y Sbjct: 60 KQALADYYGVDPE------QILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAK 113 Query: 134 LCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVL 193 + G V V D++ Q+ E + AI K K +FL SP+NP+G + S++ + A+ + Sbjct: 114 IHGAEVVKVPL--DEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERT 171 Query: 194 VRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYER--TLVVNGVSKAYAMTGLRIGYA 251 + V + D+ Y FS + P L E +V+ +SKA+ + GLRIGYA Sbjct: 172 PEDALVVV--DEAYGE-------FSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYA 222 Query: 252 AGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG 311 +I ++ + + +AQ AA+ AL DF+ + R+ L+ Sbjct: 223 IANAEIIDAL--NKVRAPFNLSRLAQAAAIAALR-DDDFIEKTVEEINAERERLYDGLKK 279 Query: 312 VPGIRYMIPDGAFYLY 327 +PG+ D F L Sbjct: 280 LPGLEVYPSDANFVLI 295 >gnl|CDD|177749 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional. Length = 430 Score = 92.9 bits (231), Expect = 1e-19 Identities = 95/397 (23%), Positives = 167/397 (42%), Gaps = 45/397 (11%) Query: 25 DLRSKGIDVLCLTAGEPD----FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVE 79 D VL L G+P F + AV A+ G+ Y+ G+ P R AI E Sbjct: 46 DAGGGPRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAE 105 Query: 80 KFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNM-GDEVLIPRPYWVSYPDMVALCGGI 138 RD ++D I + G I +M+ + G +L+PRP + Y G Sbjct: 106 YLSRDLPYELSTDDIYLTAGCAQAI-EIIMSVLAQPGANILLPRPGYPLYEARAVFSGLE 164 Query: 139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH 198 D + ++V E +E T + + +P+NP G VYS L +A+ R Sbjct: 165 VRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAET-ARKLG 223 Query: 199 VHIISDDIYEHIVYRNCQF------SNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA 252 + +I+D++Y+H+ + + F + V L + +SK + + G R+G+ A Sbjct: 224 ILVIADEVYDHLTFGSKPFVPMGVFGEVAPV--------LTLGSISKRWVVPGWRLGWIA 275 Query: 253 -----GALSLIKSMIVLQGQQ--TSGACSIAQWAAVEAL-NGPQDFVVNNRKIFEYRRDL 304 G L K + ++ ++ + Q A + + N ++F + + D+ Sbjct: 276 TCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADI 335 Query: 305 CVAQLQGVPGIRY-MIPDGAFY----LYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEK 359 C +++ + I P+G+ + L SC I+ D+DF L + E Sbjct: 336 CYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLS----------GIKDDMDFCCKLAKEES 385 Query: 360 VAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFC 396 V V+ GS+ G +RI++A+ LE+ R+K FC Sbjct: 386 VVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSFC 422 >gnl|CDD|177839 PLN02187, PLN02187, rooty/superroot1. Length = 462 Score = 92.1 bits (228), Expect = 2e-19 Identities = 95/362 (26%), Positives = 162/362 (44%), Gaps = 33/362 (9%) Query: 52 AVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA 110 AVV + G+ Y AGI P R A+ + RD T + I + G I + Sbjct: 91 AVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFES 150 Query: 111 TVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFL 170 +L+PRP + Y A G D + +++ E +E T + + Sbjct: 151 LARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVV 210 Query: 171 NSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN------CQFSNIVNVE 224 +P+NP G VYS + L+ +A+ R + +ISD++Y+ ++ + +F++IV V Sbjct: 211 INPNNPCGNVYSHDHLKKVAET-ARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPV- 268 Query: 225 PSLYERTLVVNGVSKAYAMTGLRIGYAA--GALSLIKSMIVLQGQQ-----TSGACSIAQ 277 L + G+SK + + G +IG+ A + ++ VLQ + T +I Q Sbjct: 269 -------LTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQ 321 Query: 278 WAAVEAL--NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIG 335 AA+ A+ ++F KI ++ DL +L+ +P + + P SC L+ Sbjct: 322 -AALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCV--VCPKKP----ESCTYLLT 374 Query: 336 KKSPS-GDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKR 394 K S D I+ D+DF L E + + G + G +RI+ V +LE+A R+K Sbjct: 375 KLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKG 434 Query: 395 FC 396 FC Sbjct: 435 FC 436 >gnl|CDD|181673 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional. Length = 396 Score = 92.2 bits (230), Expect = 2e-19 Identities = 106/400 (26%), Positives = 158/400 (39%), Gaps = 74/400 (18%) Query: 36 LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTS--DQ 93 L+ GEP P +K A+ ++ G Y AG+ LREAI R L Q Sbjct: 34 LSIGEPKHPTPAFIKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALDPATQ 92 Query: 94 IIVGTGAKHVIFNALMATVNMGDE---VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF 150 ++ G++ +F ++ V+ P P++ Y L G P F++ +NF Sbjct: 93 VLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNF 152 Query: 151 QVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLR---ALADVLVRNPHVHIISDDIY 207 + + + +T+ LF+ SP NP+G V + + AL+D R V I SD+ Y Sbjct: 153 APDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSD---RYGFV-IASDECY 208 Query: 208 EHIVYRNCQFSNIVNVEPSL-------------YERTLVVNGVSKAYAMTGLRIGYAAGA 254 I + P L ++R +V + +SK + GLR G+ AG Sbjct: 209 SEIYFDEAA--------PPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGD 260 Query: 255 LSLIKSMIVL---QGQQTSGAC---SIAQWAAVEALNGPQDFVVNNRKIFEYRR--DLCV 306 +L+K ++ G A SIA W + V NR + YR D Sbjct: 261 AALLKKFLLYRTYHGCAMPPAVQAASIAAW-------NDEAHVRENRAL--YREKFDAVT 311 Query: 307 AQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS 366 L V ++ PD FYL+ K P GD D +F L V V+ GS Sbjct: 312 PILAPVLDVQL--PDAGFYLWA--------KVP-GD----DTEFARRLYADYNVTVLPGS 356 Query: 367 -----SFGHGPS---IRISYAVSDAILEEACVRIKRFCHS 398 + G P +RI+ A EA RI FC S Sbjct: 357 YLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCRS 396 >gnl|CDD|180929 PRK07324, PRK07324, transaminase; Validated. Length = 373 Score = 91.2 bits (227), Expect = 4e-19 Identities = 71/355 (20%), Positives = 137/355 (38%), Gaps = 58/355 (16%) Query: 64 YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIV---GTGAKHVIFNALMATVNMGDEVL- 119 Y + G +EA+ ++ + + I+ TGA ++ AL V GD V+ Sbjct: 58 YGWIEGSPEFKEAVASLYQ-----NVKPENILQTNGATGANFLVLYAL---VEPGDHVIS 109 Query: 120 ----------IPRPYWVSYPDMVALCGGIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWL 168 IP G V + ++++ + ++L + + P TK + Sbjct: 110 VYPTYQQLYDIPESL------------GAEVDYWQLKEENGWLPDLDELRRLVRPNTKLI 157 Query: 169 FLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLY 228 +N+ +NP+G + + L + ++ R+ +++SD++Y + + +I + LY Sbjct: 158 CINNANNPTGALMDRAYLEEIVEI-ARSVDAYVLSDEVYRPLD-EDGSTPSIAD----LY 211 Query: 229 ERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ 288 E+ + N +SK Y++ G+R+G+ A +I + + A A AL Sbjct: 212 EKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRD 271 Query: 289 DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG---AFYLYPSCQDLIGKKSPSGDVIR 345 + NRKI + + P + Y+ P +F DV Sbjct: 272 AILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKL--------------DVDM 317 Query: 346 TDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ 400 DF LL+ V +V G+ F +RI Y L++ ++ F Sbjct: 318 PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREFD 372 >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional. Length = 394 Score = 87.5 bits (217), Expect = 6e-18 Identities = 96/380 (25%), Positives = 161/380 (42%), Gaps = 34/380 (8%) Query: 27 RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRDN 85 R +G+D++ L G PD P+ V A + A+ + Y G + R+AI + + R Sbjct: 31 REQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRY 90 Query: 86 DLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV---ALCGGI--P 139 + D + + G+K + + +A VN GD VL+P P +YP + G P Sbjct: 91 GVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSP---AYPAHFRGPLIAGAQIYP 147 Query: 140 VFVDTQQD---DNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRN 196 + + + D D + E +QA K L+ N PSNP+ + + R Sbjct: 148 IILKPENDWLIDLSSIPEEVAQQA-----KILYFNYPSNPTTATAPREFFEEIVA-FARK 201 Query: 197 PHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS 256 + ++ D Y + + Q ++++ + P + + + +SK Y M G R+G+ G Sbjct: 202 YEIMLVHDLCYAELAFDGYQPTSLLEI-PGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRH 260 Query: 257 LIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIR 316 +I+ + L+ G S Q AA AL P ++ ++ + RRD + L G G Sbjct: 261 IIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGL-GELGWN 319 Query: 317 YMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS--I 374 YL+ C P G DF +L+ V V G++FG G + Sbjct: 320 IPPTKATMYLWVPC--------PVG---MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYV 368 Query: 375 RISYAVSDAILEEACVRIKR 394 RIS L EA R+K+ Sbjct: 369 RISLIADCDRLGEALDRLKQ 388 >gnl|CDD|180479 PRK06225, PRK06225, aspartate aminotransferase; Provisional. Length = 380 Score = 87.1 bits (216), Expect = 8e-18 Identities = 88/361 (24%), Positives = 160/361 (44%), Gaps = 53/361 (14%) Query: 46 PENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI 104 E V+ A++R +E GE KY G LRE I++ DL D+ ++ GA + Sbjct: 43 HEEVREAMIRCIEEGEYCKYPPPEGFPELRELILK------DLGLDDDEALITAGATESL 96 Query: 105 FNALMATVNMGDEVLIPRPYWVSYPDMVALCGG----IPVFVDTQQDDNFQVSPEKLEQA 160 + + A ++ GD + P P ++ + + G +P++ ++ N++++PE +++ Sbjct: 97 YLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIY---SEECNYKLTPELVKEN 153 Query: 161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY--EHIVYRNCQFS 218 + T+ ++L P NP G Y++ ++ A++ N D + YR+ F+ Sbjct: 154 MDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDN--------DAFLLHDCTYRD--FA 203 Query: 219 N----IVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS--GA 272 P E T+ SK + M GLRIG LI+ V++ + G Sbjct: 204 REHTLAAEYAP---EHTVTSYSFSKIFGMAGLRIGAVVATPDLIE---VVKSIVINDLGT 257 Query: 273 CSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQD 332 IAQ AA+ L +++ R+ + L + + G+ +P +YPS + Sbjct: 258 NVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGV--FLP-----VYPSHGN 310 Query: 333 LIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS----SFGHGPSIRISYAVSDAILEEA 388 ++ S I + D V LLE K+ V QG+ FG IR+S+++ +E Sbjct: 311 MMVIDI-SEAGIDPE-DLVEYLLE-RKIFVRQGTYTSKRFGDR-YIRVSFSIPREQVEVF 366 Query: 389 C 389 C Sbjct: 367 C 367 >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase. Length = 409 Score = 86.5 bits (214), Expect = 1e-17 Identities = 96/387 (24%), Positives = 166/387 (42%), Gaps = 39/387 (10%) Query: 33 VLCLTAGEPD----FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDL 87 V+ L G+P F + AVV A++ + Y G+ R AI E RD Sbjct: 33 VISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPY 92 Query: 88 HYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPV-FVDTQQ 146 + D + + +G I AL G +L+PRP + Y ++ A + V +VD Sbjct: 93 KLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIY-ELCAAFRHLEVRYVDLLP 151 Query: 147 DDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI 206 + ++V + +E T L + +P NP G VYS L+ +A+ + +I+D++ Sbjct: 152 EKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAET-AEKLKILVIADEV 210 Query: 207 YEHIVYRNCQ------FSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY---AAGALSL 257 Y H+ + + F +IV V L + +SK + + G R+G+ + S Sbjct: 211 YGHLAFGSNPFVPMGVFGSIVPV--------LTLGSLSKRWIVPGWRLGWFVTTDPSGSF 262 Query: 258 IKSMIVLQGQQ----TSGACSIAQWAAVEALNGPQD--FVVNNRKIFEYRRDLCVAQLQG 311 IV + ++ G + Q AAV + D F I + D+C +++ Sbjct: 263 RDPKIVERIKKYFDILGGPATFIQ-AAVPTILEQTDESFFKKTINILKQSSDICCDRIKE 321 Query: 312 VPGIRY-MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH 370 +P I P+G+ + ++ + I D+DF L E V ++ G++ G Sbjct: 322 IPCITCPHKPEGSMAV------MVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL 375 Query: 371 GPSIRISYAVSDAILEEACVRIKRFCH 397 +RI++A + LEEA RIK F Sbjct: 376 KNWLRITFAADPSSLEEALGRIKSFYL 402 >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional. Length = 409 Score = 85.4 bits (211), Expect = 2e-17 Identities = 88/367 (23%), Positives = 152/367 (41%), Gaps = 43/367 (11%) Query: 52 AVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA 110 A+V A+ + Y GI P R AI + D + D + + G KH + Sbjct: 57 AIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKV 116 Query: 111 TVNMGDEVLIPRPYWVSYPDM--VALCGGIPV-FVDTQQDDNFQVSPEKLEQAITPKTKW 167 +L+PRP +PD+ A+ + + D + ++V + +E T Sbjct: 117 LARPEANILLPRP---GFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIA 173 Query: 168 LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSL 227 + + +P NP G VYS L +A+ R + +I+D++Y HIV+ + F V L Sbjct: 174 MVIINPGNPCGSVYSYEHLNKIAET-ARKLGILVIADEVYGHIVFGSKPF-----VPMGL 227 Query: 228 YERTLVV---NGVSKAYAMTGLRIGY-----AAGALSL------IKSMIVLQGQQTSGAC 273 + + V +SK + + G +G+ +G L + IK + Sbjct: 228 FASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALN----PAPFPP 283 Query: 274 SIAQWAAVEAL-NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP---DGAFYLYPS 329 + Q A E L +DF I C +L+ +P I M P +GAF+ Sbjct: 284 TFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCI--MCPQKAEGAFFALVK 341 Query: 330 CQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEAC 389 L+ + I D++F L + E + ++ G + G +RI++AV + LE+ Sbjct: 342 LNLLLLED------IEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGL 395 Query: 390 VRIKRFC 396 R+K FC Sbjct: 396 GRLKSFC 402 >gnl|CDD|179178 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated. Length = 361 Score = 83.4 bits (207), Expect = 9e-17 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 33/219 (15%) Query: 52 AVVRAMERGETKYTAVAGI----SPLREAIVEKFRRDNDLHYTSDQIIV-GTGAKHVIFN 106 V A+E+ ++ I P + E + + + IIV G G VI Sbjct: 51 KAVEAIEK------ELSKIHRYPEPDAPELREALSKYTGVP--VENIIVGGDGMDEVIDT 102 Query: 107 ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK 166 + ++ GDEV+IP P + Y G PV+ +++++F + + + AIT KTK Sbjct: 103 LMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYA--KREEDFSLDVDSVLNAITEKTK 160 Query: 167 WLFLNSPSNPSGVVYSQNRLRALA---DVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNV 223 +FL +P+NP+G + + +R + D LV ++ +F+ Sbjct: 161 VIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYV--------------EFAEYDYT 206 Query: 224 EPSL-YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSM 261 +L Y+ ++ SK + + GLRIGY LI Sbjct: 207 PLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYY 245 >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated. Length = 388 Score = 83.2 bits (206), Expect = 1e-16 Identities = 93/397 (23%), Positives = 162/397 (40%), Gaps = 63/397 (15%) Query: 27 RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRDN 85 R+ G +++ L+ G D P + A+ +++ T Y G REA + + + Sbjct: 26 RAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRF 85 Query: 86 DLHY---TSDQIIVGT--GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPV 140 L T ++G+ G H+ +A +N GD L+ P + S+ V L GG Sbjct: 86 GLAVDPETEVLPLIGSQEGTAHLP----LAVLNPGDFALLLDPGYPSHAGGVYLAGGQIY 141 Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRL-RALADVLVRNPHV 199 + + +++F + + + + + L+ P NP+ + + A+A + + Sbjct: 142 PMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVA--FCQQHDL 199 Query: 200 HIISDDIYEHIVYRNCQFSNIVNVEPSLY----ERTLVVN--GVSKAYAMTGLRIGYAAG 253 ++ D Y +V F V PS+ E+++ + +SK+Y M G RIG+A G Sbjct: 200 VLVHDFPYVDLV-----FDGEVEP-PSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG 253 Query: 254 ------ALSLIKSMI-------VLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEY 300 AL +K+++ +L G A+ AL GPQ V +IF Sbjct: 254 NAQLIQALRQVKAVVDFNQYRGILNG-------------AIAALTGPQATVQQTVQIFRQ 300 Query: 301 RRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKV 360 RRD + L + G +P+ Y++ + S ++F L+ V Sbjct: 301 RRDAFINALHQI-GWPVPLPEATMYVWAKLPEPWQGNS---------VEFCTQLVAQTGV 350 Query: 361 AVVQGSSFGHGPS--IRISYAVSDAILEEACVRIKRF 395 A GS FG +R + ILEEA RI F Sbjct: 351 AASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAF 387 >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional. Length = 374 Score = 81.7 bits (202), Expect = 3e-16 Identities = 92/387 (23%), Positives = 162/387 (41%), Gaps = 57/387 (14%) Query: 29 KGIDVLCLTAGEPDFDMPENVKYAVVR--AMERGETKYTAVAGISPLREAIVEKFRRDND 86 K L LT GEP F+ P+ ++ A+ + KY AG LREA F+R Sbjct: 22 KEYKGLDLTIGEPQFETPKFIQDALKNNAHLLN---KYPKSAGEESLREAQRGFFKRRFK 78 Query: 87 LHYTSDQIIVGTGAKHVIFN----ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFV 142 + +++I G + V+FN L N + P P++ Y + + Sbjct: 79 IELKENELIPTFGTREVLFNFPQFVLFDKQN--PTIAYPNPFYQIYEGAAIASRAKVLLM 136 Query: 143 DTQQDDNFQ--VSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVH 200 ++++F ++ ++L++ + LNSP+NP+G S L + +++ + Sbjct: 137 PLTKENDFTPSLNEKELQEV-----DLVILNSPNNPTGRTLSLEELIEWVKLALKHDFI- 190 Query: 201 IISDDIYEHIVYRNCQFSNIVN----VEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS 256 +I+D+ Y I Y N +++ V ++ LV+N +SK + GLR G+ AG S Sbjct: 191 LINDECYSEI-YENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDAS 249 Query: 257 LIKSMIVLQGQQTSGACSIA---QWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQ-LQGV 312 ++K +T C+ Q AA A + R I Y ++L +A+ + G+ Sbjct: 250 ILKKYKAY---RTYLGCASPLPLQKAAAVAWL-DDEHAEFFRNI--YAKNLKLAREILGI 303 Query: 313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGP 372 IP FY++ + D +F L + E + V+ GS G Sbjct: 304 T-----IPPATFYVWLPVDN--------------DEEFTKKLYQNEGIKVLPGSFLGRNG 344 Query: 373 S----IRISYAVSDAILEEACVRIKRF 395 +RI+ LE+A IK + Sbjct: 345 IGKGYVRIALVYDTPKLEKALEIIKTY 371 >gnl|CDD|179465 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated. Length = 367 Score = 81.0 bits (201), Expect = 5e-16 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 22/222 (9%) Query: 73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132 L+ A+ EKF D ++II+G G+ ++ A + GDEV+ + YP + Sbjct: 72 LKAALAEKFGVD------PERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYP-IA 124 Query: 133 AL-CGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD 191 A G PV V ++ + + A+TP+T+ +F+ +P+NP+G + Sbjct: 125 AQAVGAKPVEV---PAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLA 181 Query: 192 VLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA 251 + P V ++ D+ Y V R + V + +V SKAY + GLR+GY Sbjct: 182 GV--PPDVLVVLDEAYAEYVRRKDYEDGLELVA--KFPNVVVTRTFSKAYGLAGLRVGYG 237 Query: 252 AGALSLIKSM--IVLQGQQTSGACSIAQWAAVEALNGPQDFV 291 +I ++ + +Q S+A AAV AL+ FV Sbjct: 238 IAPPEIIDALNRV----RQPFNVNSLALAAAVAALDD-DAFV 274 >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional. Length = 352 Score = 76.9 bits (190), Expect = 8e-15 Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 52/237 (21%) Query: 68 AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVS 127 G LR A+ E + + VG G+ + + AT GDEV+ W S Sbjct: 57 MGAVELRAALAEHL------GVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFA---WRS 107 Query: 128 ---YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQN 184 YP +V + G PV V D + + + AIT +T+ +F+ +P+NP+G V + Sbjct: 108 FEAYPILVQVAGATPVQVPLTPDHTHDL--DAMAAAITDRTRLIFVCNPNNPTGTVVTPA 165 Query: 185 RLRALADVLVRNP-HVHIISDDIYEHIV-----------YRNCQFSNIVNVEPSLYERTL 232 L D P V ++ D+ Y V R N+V + RT Sbjct: 166 ELARFLD---AVPADVLVVLDEAYVEYVRDDDVPDGLELVR--DHPNVVVL------RTF 214 Query: 233 VVNGVSKAYAMTGLRIGYAAG----ALSLIKSMIVLQGQQTSGACSIAQWAAVEALN 285 SKAY + GLR+GYA G +L K + S+AQ AA+ +L Sbjct: 215 -----SKAYGLAGLRVGYAVGHPEVIAALRKVAVPF------SVNSLAQAAAIASLA 260 >gnl|CDD|180514 PRK06290, PRK06290, aspartate aminotransferase; Provisional. Length = 410 Score = 75.8 bits (187), Expect = 2e-14 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 13/294 (4%) Query: 39 GEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYT--SDQIIV 96 GEPD E+V + ++ E + A GI +EA + + ++I Sbjct: 52 GEPDEMADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIH 111 Query: 97 GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM---VALCGGIPVFVDTQQDDNFQVS 153 G+K + +N GD L+ P YP GG + +++NF Sbjct: 112 SIGSKPALAMLPSCFINPGDVTLMTVP---GYPVTGTHTKYYGGEVYNLPLLEENNFLPD 168 Query: 154 PEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYR 213 + + + I K K L+LN P+NP+G V ++ + D N ++ ++ D Y + + Sbjct: 169 LDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKEN-NIIVVQDAAYAALTFD 227 Query: 214 NCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGAC 273 S ++V + E + ++ +SKAY MTG R+ + G ++K+ ++ SG Sbjct: 228 GKPLS-FLSVPGAK-EVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDSGQF 285 Query: 274 SIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLY 327 Q A + AL+ P + R+ + R D V L V G + +P G FYLY Sbjct: 286 IAIQKAGIYALDHP-EITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFYLY 337 >gnl|CDD|178217 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase. Length = 447 Score = 72.6 bits (178), Expect = 2e-13 Identities = 88/359 (24%), Positives = 163/359 (45%), Gaps = 52/359 (14%) Query: 69 GISPLREAI---VEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV--NMGDEVLIPRP 123 G+ R+A+ +E+ R + D+I++ GA N L+ + + GD +L+P P Sbjct: 96 GLKSFRQAMASFMEQIR-GGKARFDPDRIVLTAGATAA--NELLTFILADPGDALLVPTP 152 Query: 124 YWVSYP----DMVALCGG--IPVFVDTQQDDNFQVSPEKLE------QAITPKTKWLFLN 171 Y YP D+ G +P+ D+ +NFQV+P+ LE +A + + + + Sbjct: 153 Y---YPGFDRDLRWRTGVKIVPIHCDSS--NNFQVTPQALEAAYQEAEAANIRVRGVLIT 207 Query: 172 SPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNV-----EPS 226 +PSNP G ++ L + D +VR ++H++SD+IY V+ +F ++ + Sbjct: 208 NPSNPLGATVQRSVLEDILDFVVRK-NIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKG 266 Query: 227 LYERTLVVNGVSKAYAMTGLRIG----YAAGALSLIKSM--IVLQGQQTSGACSIAQWAA 280 + ER +V +SK + G R+G Y ++ + M L QT +A + Sbjct: 267 VAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQH--LLASMLS 324 Query: 281 VEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPS 340 E ++++ NR+ R ++ V L+ GI + + + + + L+ + Sbjct: 325 DEEFT--ENYIRTNRERLRKRYEMIVQGLR-RAGIECLKGNAGLFCWMNLSPLLETPTRE 381 Query: 341 GDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS---IRISYA-VSDAILEEACVRIKRF 395 G +L + +L K+ + GSS H R+ +A +S+ LE A RI RF Sbjct: 382 G-----ELALWDSILREVKLNISPGSSC-HCSEPGWFRVCFANMSEDTLEVALKRIHRF 434 >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional. Length = 351 Score = 71.0 bits (174), Expect = 5e-13 Identities = 75/339 (22%), Positives = 140/339 (41%), Gaps = 72/339 (21%) Query: 36 LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISP------LREAIVEKFRRDNDLHY 89 + A E F++PE V + E ++ I P LRE + Sbjct: 27 MDANETPFELPEEVIKNI------QEIVKSSQVNIYPDPTAEKLREELARY------CSV 74 Query: 90 TSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDN 149 I VG G+ +I ++A +N GD V+ P P + Y + G + + V ++D Sbjct: 75 VPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYT 134 Query: 150 FQVSPEKLEQAITP-KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE 208 + V + I + K +FL +P+NP+G V + + ++ ++ + ++ + +E Sbjct: 135 YDV--GSFIKVIEKYQPKLVFLCNPNNPTGSVIERED---IIKIIEKSRGIVVVDEAYFE 189 Query: 209 HIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA------GALSLIKSMI 262 + N + + +E +V+ +SKA+ + GLR+GYA L+L+KS Sbjct: 190 F-------YGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSPY 242 Query: 263 VLQGQQTSGACSIAQWAAVEALNGPQ-----DFVVNNRKIFEYRRDLCVAQLQGVPGIRY 317 + S++Q A++ L ++++N R+ + +L +PGI+ Sbjct: 243 NIN--------SLSQVIALKVLRTGVLKERVNYILNERERL-------IKELSKIPGIK- 286 Query: 318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLE 356 +YPS + I K D GLLE Sbjct: 287 --------VYPSKTNFILVKFKDAD------YVYQGLLE 311 >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional. Length = 380 Score = 67.0 bits (164), Expect = 7e-12 Identities = 74/265 (27%), Positives = 119/265 (44%), Gaps = 33/265 (12%) Query: 72 PLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM 131 LR A+ E D S+ I+VG GA +I + ++ GD+++ P + Y Sbjct: 90 RLRAALAE------DSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFD 143 Query: 132 VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD 191 A+ G + V D + V P +E T K K LFL SP+NP G + S + L + + Sbjct: 144 AAVNGAEVIKVPRTPDFSLDV-PRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILE 202 Query: 192 --VLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG 249 +LV + D+ Y I + + S + V+ Y+ +V+ SK + GLR+G Sbjct: 203 LPILV-------VLDEAY--IEFSTQE-SRMKWVKK--YDNLIVLRTFSKRAGLAGLRVG 250 Query: 250 YAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQL 309 Y A LS+I+ + + +Q A+ AA AL+ P+ + E R L L Sbjct: 251 YGAFPLSIIEYL--WRAKQPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERL-FGLL 307 Query: 310 QGVPGIRYMIPDGAFYLYPSCQDLI 334 + VP ++ P YPS + I Sbjct: 308 KEVP---FLEP------YPSDANFI 323 >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional. Length = 337 Score = 67.1 bits (164), Expect = 8e-12 Identities = 55/262 (20%), Positives = 102/262 (38%), Gaps = 41/262 (15%) Query: 4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK 63 I +++ +P + R+ L E FD+PE +K + ++R Sbjct: 2 IRELVKSFKPYRVVEGNYRIW-----------LDKNENPFDLPEELKEEIFEELKRVPFN 50 Query: 64 YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRP 123 PLREAI E ++ I VG G+ +I + + + G ++I P Sbjct: 51 RYPHITSDPLREAIAEF------YGLDAENIAVGNGSDELI--SYLVKLFEGKHIVITPP 102 Query: 124 YWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQ 183 + Y A GIPV +D ++F + E++ +F+ SP+NP+G + + Sbjct: 103 TFGMY-SFYAKLNGIPV-IDVPLKEDFTIDGERIA-EKAKNASAVFICSPNNPTGNLQPE 159 Query: 184 NR-LRAL---ADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK 239 L+ L V++ + + I Y +++ SK Sbjct: 160 EEILKVLETGKPVVLDEAYAEFSGKSLIGLI---------------DEYPNLILLRTFSK 204 Query: 240 AYAMTGLRIGYAAGALSLIKSM 261 A+ + G+R GYA +I ++ Sbjct: 205 AFGLAGIRAGYAIANEEIIDAL 226 >gnl|CDD|181151 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed. Length = 364 Score = 66.5 bits (163), Expect = 1e-11 Identities = 75/309 (24%), Positives = 121/309 (39%), Gaps = 48/309 (15%) Query: 36 LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF-RRDNDLHYTSDQI 94 L+ G P +P ++ A+ A + Y AG LREAIV RR + Sbjct: 32 LSVGTPVDPVPPVIQEALAAAAD--APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAV 89 Query: 95 IVGTGAKHVIFNALMAT---VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQ 151 + G+K ++ A + T + GD V+IP + +Y L G V D + Sbjct: 90 LPVIGSKELV--AWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD----SLTE 143 Query: 152 VSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIV 211 + P++ ++LNSPSNP+G V + LR + R + SD+ Y + Sbjct: 144 LGPQRP--------ALIWLNSPSNPTGRVLGVDHLRKVVA-WARERGAVVASDECYLELG 194 Query: 212 Y----------RNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSM 261 + R C + L V+ +SK + G R G+ AG +L+ + Sbjct: 195 WDAEPVSILDPRVCGGD---------HTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAEL 245 Query: 262 IVLQ---GQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318 + ++ G Q A V AL G V R+ + RR + L+ G R Sbjct: 246 LEVRKHAGMMVPAP---VQAAMVAAL-GDDAHVREQRERYARRRAVLRPALEAA-GFRVD 300 Query: 319 IPDGAFYLY 327 + YL+ Sbjct: 301 HSEAGLYLW 309 >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 Score = 66.3 bits (162), Expect = 1e-11 Identities = 78/303 (25%), Positives = 125/303 (41%), Gaps = 36/303 (11%) Query: 36 LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF-RRDNDLHYTSDQI 94 L+ G P +P ++ A+ A + Y G LREAIV+ RR + Sbjct: 26 LSVGTPVDPVPPLIRAALAAAAD--APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAV 83 Query: 95 IVGTGAKHVIFNALMAT---VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQ 151 + G K ++ A + T + GD V+IP + +Y L G PV D Sbjct: 84 LPVIGTKELV--AWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD-------- 133 Query: 152 VSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIV 211 P +L+ ++LNSP NP+G V S + LRA+ R + SD+ Y + Sbjct: 134 -DPTELDPV---GPDLIWLNSPGNPTGRVLSVDELRAIVA-WARERGAVVASDECYLELG 188 Query: 212 YRNCQFSNIVNV-EPSL----YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQG 266 + V++ +P + + L V+ +SK + G R G+ AG +L+ + L Sbjct: 189 WE----GRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAEL--LTV 242 Query: 267 QQTSGACSIA--QWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAF 324 ++ +G A Q A V AL G V + + RR L+ G R + Sbjct: 243 RKHAGLMVPAPVQAAMVAAL-GDDGHVAEQKARYAARRAQLKPALE-KAGFRIDHSEAGL 300 Query: 325 YLY 327 YL+ Sbjct: 301 YLW 303 >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional. Length = 354 Score = 65.8 bits (161), Expect = 2e-11 Identities = 51/240 (21%), Positives = 110/240 (45%), Gaps = 19/240 (7%) Query: 27 RSKGID---VLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR 83 R KG+ +L +A +PE++K A+ +++ +Y + LR+ I Sbjct: 12 REKGLTKNMILDFSANINPLGVPESLKQAITENLDKLV-EYPDPDYLE-LRKRIAS---- 65 Query: 84 DNDLHYTS-DQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFV 142 + +I+G GA +IFN + T +VLI P + Y + + Sbjct: 66 ---FEQLDLENVILGNGATELIFNIVKVT--KPKKVLILAPTFAEYERALKAFDAEIEYA 120 Query: 143 DTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHII 202 + ++ NF + E + + I + +FL +P+NP+G + S+ ++ + D + ++++I Sbjct: 121 ELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKR-NIYLI 178 Query: 203 SDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMI 262 D+ + + N S I +E ++ +++ +K +A+ GLR+GY + + + Sbjct: 179 IDEAFMDFLEENETISMINYLEN--FKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKL 236 >gnl|CDD|183263 PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional. Length = 379 Score = 65.0 bits (159), Expect = 3e-11 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 8/95 (8%) Query: 98 TGAKHVIFNALMAT-VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEK 156 T H+ LMA + GDEV+ P WVS +M+ L G PV VD + D V+PE Sbjct: 58 TAGMHI---TLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDR-DTLMVTPEA 113 Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD 191 +E AITP+TK + P + +G + +RA+ + Sbjct: 114 IEAAITPRTKAII---PVHYAGAPADLDAIRAIGE 145 >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 Score = 62.8 bits (153), Expect = 2e-10 Identities = 100/402 (24%), Positives = 155/402 (38%), Gaps = 50/402 (12%) Query: 20 AQRVRDLRSKG--IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISP----- 72 +RV + R K D++ L G+ +P +V A A++ ++ T G P Sbjct: 20 NRRVNEFRKKHPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASEET-FRGYGPEQGYP 78 Query: 73 -LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM 131 LREAI E R ++I + GAK +F L + + V + P + +Y D Sbjct: 79 FLREAIAENDYRG---RIDPEEIFISDGAKCDVFR-LQSLFGSDNTVAVQDPVYPAYVDS 134 Query: 132 VALCGGIPVFVDTQQDDNFQVSPEKLEQAITP------KTKWLFLNSPSNPSGVVYSQNR 185 + G V D + P E P K ++L SP+NP+G V ++ + Sbjct: 135 NVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQ 194 Query: 186 LRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG 245 L+ L D + + I+ D Y + +I + P E + SK TG Sbjct: 195 LKELVDYANEHGSL-ILFDAAYSAFISDPSLPHSIFEI-PGAKECAIEFRSFSKTAGFTG 252 Query: 246 LRIGY--------AAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKI 297 +R+G+ A S+I+ Q + +GA Q AA EA + I Sbjct: 253 VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAA-EAAYAGEGLQPILEAI 311 Query: 298 FEYRR--DLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLL 355 Y + L+ G + + A YL+ K+P G + DF + LL Sbjct: 312 SYYMENARILRKALEAA-GFKVYGGEHAPYLW--------VKTPEG---ISSWDFFDFLL 359 Query: 356 EIEKVAVVQGSSFGHGPS----IRISYAVSDAILEEACVRIK 393 V GS F GPS +R S + EAC RIK Sbjct: 360 YQYHVVGTPGSGF--GPSGEGFVRFSAFGKRENIVEACERIK 399 >gnl|CDD|181748 PRK09275, PRK09275, aspartate aminotransferase; Provisional. Length = 527 Score = 62.2 bits (152), Expect = 2e-10 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 25/165 (15%) Query: 97 GTGAKHVIFNALMAT--VNMGDEVLIPRPYWVSYPDMVALCGGIP---------VFVDTQ 145 GT A IF++L + GD++ + P + Y + IP V ++ Sbjct: 170 GTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLE-------IPELPRYDLEVVHINAD 222 Query: 146 QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD-VLVRNPHVHIISD 204 +++ +Q +LE+ P K LFL +PSNP V S L +AD V + P + II+D Sbjct: 223 EENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITD 282 Query: 205 DIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG 249 D+Y V F ++ V P T++V SK + TG R+G Sbjct: 283 DVYGTFVD---DFRSLFAVLP---YNTILVYSFSKYFGATGWRLG 321 >gnl|CDD|179449 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional. Length = 374 Score = 62.0 bits (151), Expect = 3e-10 Identities = 75/304 (24%), Positives = 133/304 (43%), Gaps = 30/304 (9%) Query: 36 LTAGEPDFDMPENVKYAVVRAMERG-ETKYTAVAGISPLREAIVEKFRRDNDLHY--TSD 92 L E +D+P ++K + ++G E+ G L++AI E T Sbjct: 33 LDTNEFPYDLPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPA 92 Query: 93 QIIVGTGAKHVIFNALMATVNMGDE--VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF 150 I VG G+ +I + L+AT +G E +L+ P + Y ++A GIPV + + F Sbjct: 93 NISVGNGSDELIRSLLIATC-LGGEGSILVAEPTFSMY-GILAQTLGIPVVRVGRDPETF 150 Query: 151 QVSPEKLEQAIT----PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI 206 ++ + AI P + +F+ P++P+G + L L + + ++ D+ Sbjct: 151 EIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSL---PEDILVVIDEA 207 Query: 207 YEHIVYRNCQFSNIVNVEPSLYERT--LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVL 264 Y + Q + + L + +++ SKA+ + R+GYA G LI VL Sbjct: 208 Y----FEFSQTTLV----GELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELI---AVL 256 Query: 265 QGQQTS-GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA 323 + + S +Q AA AL Q+ + +I + R L LQ +P +R + P A Sbjct: 257 EKVRLPYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRL-YQALQELPQLR-VWPSAA 314 Query: 324 FYLY 327 +LY Sbjct: 315 NFLY 318 >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase. Length = 496 Score = 61.6 bits (149), Expect = 3e-10 Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 16/196 (8%) Query: 69 GISPLREAIVEKF--RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWV 126 G+ R+AI R + + +++++ GA + + GD LIP PY+ Sbjct: 95 GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYA 154 Query: 127 SYPDMVALCGGIPVF-VDTQQDDNFQVSPEKLE------QAITPKTKWLFLNSPSNPSGV 179 ++ + G+ + V DNF+++ + + Q K K L L +PSNP G Sbjct: 155 AFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGT 214 Query: 180 VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNI------VNVEPSLYERTLV 233 + ++ L L + R ++H++ D+IY V+ F ++ V++ + + Sbjct: 215 MLDKDTLTNLVRFVTRK-NIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHI 273 Query: 234 VNGVSKAYAMTGLRIG 249 V +SK + G R+G Sbjct: 274 VYSLSKDMGLPGFRVG 289 >gnl|CDD|162222 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. Length = 330 Score = 59.9 bits (146), Expect = 1e-09 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 27/244 (11%) Query: 73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132 LR A + + ++ GA+ I+ L+ + VL+ P + Y Sbjct: 52 LRAAAAAYYGLP------AASVLPVNGAQEAIY--LLPRLLAPGRVLVLAPTYSEYARAW 103 Query: 133 ALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192 G V + ++L A+ L L +P+NP+G + L ALA Sbjct: 104 RAAGHEVVELPD---------LDRLPAALEE-LDVLVLCNPNNPTGRLIPPETLLALAAR 153 Query: 193 LVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA 252 L R ++ D+ + S + +V+ ++K + + GLR+G+ Sbjct: 154 L-RARGGWLVVDEAFIDFTP---DASLAPQAAR--FPGLVVLRSLTKFFGLAGLRLGFVV 207 Query: 253 GALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV 312 +L+ + G T A+ A AL + R R A L + Sbjct: 208 AHPALLARLREALGPWTVNG--PARAAGRAALA-DTAWQAATRARLAAERARLAALLARL 264 Query: 313 PGIR 316 G+ Sbjct: 265 GGLE 268 >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase. Length = 468 Score = 60.2 bits (146), Expect = 1e-09 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 23/200 (11%) Query: 69 GISPLREAIVEKFR--RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWV 126 G+ + A+ E R N + + +++++ GA + GD L+P PY Sbjct: 87 GLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPY-- 144 Query: 127 SYP----DMVALCGGIPVFVDTQQDDNFQVSPEKLEQA------ITPKTKWLFLNSPSNP 176 YP D+ G V + + FQ++ LE+A + K K + + +PSNP Sbjct: 145 -YPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNP 203 Query: 177 SGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNV-------EPSLYE 229 G ++ L L D + ++H+ISD+IY V+ + F +++ V + Sbjct: 204 LGTTTTRTELNLLVD-FITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSN 262 Query: 230 RTLVVNGVSKAYAMTGLRIG 249 R +V +SK + G R+G Sbjct: 263 RVHIVYSLSKDLGLPGFRVG 282 >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional. Length = 371 Score = 59.0 bits (143), Expect = 2e-09 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 17/182 (9%) Query: 73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132 LREAI + D +II+G G++ +I A + GD V+ P + + D Sbjct: 76 LREAIAARTGVPAD------RIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYP 129 Query: 133 ALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192 + G V D F + + L A+ + L ++PSNP G + ++L + D Sbjct: 130 TMMGARVERVTVTPDLGFDL--DALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDA 187 Query: 193 LVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTL---VVNGVSKAYAMTGLRIG 249 P I+ D+ Y + + L R L V+ SKAY + GLR+G Sbjct: 188 T--PPETLIVVDEAY----AEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVG 241 Query: 250 YA 251 Y Sbjct: 242 YG 243 >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional. Length = 357 Score = 58.2 bits (141), Expect = 3e-09 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 12/165 (7%) Query: 90 TSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDN 149 + +Q+ + G + A ++ GD VL+P P + Y G + D+ Sbjct: 81 SPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADD 140 Query: 150 FQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEH 209 F+ + + + A + + ++L SP NP+G + + ALA+ + ++ D+ Y Sbjct: 141 FEQTADTVLDAYDGE-RIVYLTSPHNPTGSEIPLDEVEALAERT--DEETLVVVDEAYG- 196 Query: 210 IVYRNCQFSNIVNVEPSLYER--TLVVNGVSKAYAMTGLRIGYAA 252 +F+ + + ER V+ SKAY + GLR+GYA Sbjct: 197 ------EFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAV 235 >gnl|CDD|179546 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional. Length = 359 Score = 58.1 bits (141), Expect = 4e-09 Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 26/249 (10%) Query: 47 ENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFN 106 VK A+ A E LR + + L +Q++ G G VI Sbjct: 45 PKVKEAI--AAHLDELALYPDGYAPELRTKVAKH------LGVDEEQLLFGAGLDEVIQM 96 Query: 107 ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK 166 A +N G ++ P + Y + G V + + E + +AI +TK Sbjct: 97 ISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDEQTK 153 Query: 167 WLFLNSPSNPSGVVYSQNRLRALADVLVRNP-HVHIISDDIYEHIVYRNCQFSNIVNVEP 225 +++ +P+NP+G + L + L P HV ++ D+ Y V + + + P Sbjct: 154 IVWICNPNNPTGTYVNHEELLSF---LESVPSHVLVVLDEAYYEYVTAE-DYPDTL---P 206 Query: 226 SL--YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSM-IVLQGQQTSGACSIAQWAAVE 282 L YE +V+ SKAY + LR+GY + LI+ + I T+ IAQ+AA+ Sbjct: 207 LLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPPFNTT---RIAQYAAIA 263 Query: 283 ALNGPQDFV 291 AL Q F+ Sbjct: 264 ALED-QAFL 271 >gnl|CDD|185585 PTZ00377, PTZ00377, alanine aminotransferase; Provisional. Length = 481 Score = 58.1 bits (141), Expect = 4e-09 Identities = 91/390 (23%), Positives = 153/390 (39%), Gaps = 66/390 (16%) Query: 54 VRAMERGETKYTAVAGISPLREAIVEKF--RRDNDLHYTSDQIIVGTGAK---HVIFNAL 108 + A+ G YT AG +R+A+ F RRD SD I + GA ++ L Sbjct: 101 LNAIGGGTGAYTDSAGYPFVRKAVA-AFIERRDGVPKDPSD-IFLTDGASSGIKLLLQLL 158 Query: 109 MATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA-------- 160 + + D V+IP P + Y + L GG V ++ + + E+LE+A Sbjct: 159 IG--DPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNG 216 Query: 161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVY----RNCQ 216 ITP+ L + +P NP+G V +++ + + V +++D++Y+ +Y Sbjct: 217 ITPRA--LVVINPGNPTGQVLTRDVMEEIIKFCYEKGIV-LMADEVYQENIYDGEKPFIS 273 Query: 217 FSNIVNVEPSLYERTLVV---NGVSKA-YAMTGLRIGYAAGALSLIKSMIVLQGQQ--TS 270 F ++ P+ Y + + + SK G R GY L+ I + Q + + Sbjct: 274 FRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYF--ELTNIPPEVREQIYKLASI 331 Query: 271 GACS--IAQWAAVEALNGP-------QDFVVNNRKIFE--YRRDLCVAQ-LQGVPGIRYM 318 CS + Q N P + IF RR + L + G+ Sbjct: 332 NLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQ 391 Query: 319 IPDGAFYLYPS----------CQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF 368 +GA Y +P ++ +P D+ + LLE + VV GS F Sbjct: 392 PVEGAMYAFPRIELPEKAIQEAKER--GLAP-------DVLYCLELLESTGIVVVPGSGF 442 Query: 369 GHGPS---IRISYAVSDAILEEACVRIKRF 395 G P RI+ + +EE +IK F Sbjct: 443 GQKPGTYHFRITILPPEEQIEEMVKKIKEF 472 >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional. Length = 388 Score = 56.9 bits (138), Expect = 8e-09 Identities = 56/251 (22%), Positives = 96/251 (38%), Gaps = 30/251 (11%) Query: 64 YTAVAGISPLREAIVEKFRRDN-DLHYTSDQI---IVGTGAKHVIFNALMATVNMGDEVL 119 Y GI LR+ EK R+N L + ++ IV H + V+ GD VL Sbjct: 40 YAPPQGIPELRDLWQEKMLRENPSL--SGKKMSLPIVTNALTHGLSLVADLFVDQGDTVL 97 Query: 120 IPRPYWVSYPDMVAL-CGGIPVFVDTQQDDN-FQVSP--EKLEQAITPKTKWLFLNSPSN 175 +P W +Y G V +D F E L+ A + LN P+N Sbjct: 98 LPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNN 157 Query: 176 PSGVVYSQNRLRALADVLV----RNPHVHIISDDIYEHIVYRNCQ----FSNIVNVEPSL 227 P+G ++ A+ + + V + DD Y + Y + F+ + N+ ++ Sbjct: 158 PTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNI 217 Query: 228 YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQG--QQTSGA-------CS-IAQ 277 + ++G +K + G R+G+ S V + ++ G +Q Sbjct: 218 L--AVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQ 275 Query: 278 WAAVEALNGPQ 288 A + ALN P+ Sbjct: 276 SAVLRALNSPE 286 >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). Length = 521 Score = 56.2 bits (136), Expect = 2e-08 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 30/170 (17%) Query: 97 GTGAKHVIFNALMAT--VNMGDEVLIPRPYWVSYPDMVALCGGIP---------VFVDTQ 145 GT A IF++L A + GD++ + P + Y + IP V + Sbjct: 164 GTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLE-------IPELPRYDFEVVRIKAD 216 Query: 146 QDDN-----FQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD-VLVRNPHV 199 + +Q ++LE+ P K LF+ +PSNP V S + + D V P + Sbjct: 217 EMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDL 276 Query: 200 HIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG 249 I++DD+Y V F ++ P T+ V SK + TG R+G Sbjct: 277 MILTDDVYGTFVD---DFRSLFAELP---YNTIGVYSFSKYFGATGWRLG 320 >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated. Length = 366 Score = 55.4 bits (133), Expect = 2e-08 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 15/218 (6%) Query: 68 AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVS 127 G + LR+ I K LH +Q++ G+G VI A + GD ++ + Sbjct: 64 GGATTLRQTIANK------LHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQ 117 Query: 128 YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLR 187 Y + G V +N +++ + TK +++ +P+NP+G + +L Sbjct: 118 YRHHAIIEG---CEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLT 174 Query: 188 ALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLR 247 + + N + +I + YE++ ++ F + + ++ LV+ SKAY + R Sbjct: 175 QFIEGISENTLI-VIDEAYYEYVTAKD--FPETLPLLEK-HKNILVLRTFSKAYGLASFR 230 Query: 248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALN 285 +GYA G LI+ + V+ + S+AQ AA A Sbjct: 231 VGYAVGHEELIEKLNVV--RLPFNVSSLAQKAATIAFG 266 >gnl|CDD|183283 PRK11706, PRK11706, TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional. Length = 375 Score = 54.1 bits (131), Expect = 7e-08 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 107 ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK 166 AL+ + GDEV++P +VS + L G VFVD + D + +E AITPKT+ Sbjct: 63 ALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI-RPDTMNIDETLIEAAITPKTR 121 >gnl|CDD|181860 PRK09440, avtA, valine--pyruvate transaminase; Provisional. Length = 416 Score = 51.8 bits (125), Expect = 3e-07 Identities = 74/355 (20%), Positives = 130/355 (36%), Gaps = 53/355 (14%) Query: 64 YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTG---AKHVIFNALMATVNMGD--EV 118 Y G L EA+ + + I + G A +FN G ++ Sbjct: 70 YDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKI 129 Query: 119 LIP-RPYWVSYPDMVALCGGIPVFVDTQQD----DN----FQVSPEKLEQAITPKTKWLF 169 L P P ++ Y D L + FV + + + V E L I T + Sbjct: 130 LFPLAPEYIGYAD-AGLEEDL--FVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAIC 184 Query: 170 LNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYE 229 ++ P+NP+G V + L L D L R ++ ++ D+ Y + FS P Sbjct: 185 VSRPTNPTGNVLTDEELEKL-DALARQHNIPLLIDNAYG-PPFPGIIFS---EATPLWNP 239 Query: 230 RTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQD 289 ++ +SK + G+R G +I+++ + G + + A E + Sbjct: 240 NIILCMSLSKL-GLPGVRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL 298 Query: 290 FVVNNRKIFEY---RRDLCVAQL-QGVPGIRYMI--PDGAFYLYPSCQDL-IGKKSPSGD 342 ++ I + + L +A L + +P +I P+GA +L+ +DL I Sbjct: 299 LRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLPI-------- 350 Query: 343 VIRTDLDFVNGLLEIEKVAVVQGSSFGHG---------PSIRISYAVSDAILEEA 388 T + L+ V VV G F G IR++Y D +E+ Sbjct: 351 ---TTEELYQ-RLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKG 401 >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase. Length = 534 Score = 51.5 bits (123), Expect = 4e-07 Identities = 83/346 (23%), Positives = 141/346 (40%), Gaps = 38/346 (10%) Query: 59 RGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAK---HVIFNALMATVNMG 115 R Y+ GI LR+AI + + I + GA H++ L+ + Sbjct: 159 RATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEK-- 216 Query: 116 DEVLIPRPYWVSYPDMVALCGG--IPVFVDTQQDDNFQVSPEK--LEQA----ITPKTKW 167 D +L P P + Y +AL GG +P ++D ++S K LE A IT + Sbjct: 217 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRA-- 274 Query: 168 LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVY-RNCQFSNIVNVEPS 226 L + +P NP+G V ++ R + + + + +++D++Y+ VY + +F + V S Sbjct: 275 LVVINPGNPTGQVLAEENQRDIVE-FCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARS 333 Query: 227 L--YERTLVV---NGVSKA-YAMTGLRIGY--AAGALSLIKSMIVLQGQQTSGACSIAQW 278 + E+ + + VSK Y G R GY G S ++ I + Q Sbjct: 334 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQI 393 Query: 279 AAVEALNGP-------QDFVVNNRKIFEY--RRDLCVAQ-LQGVPGIRYMIPDGAFYLYP 328 A ++ P + ++ I RR + L + G+ +GA YL+P Sbjct: 394 LASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFP 453 Query: 329 SCQDLIGKKSPSGDVIRTDLD--FVNGLLEIEKVAVVQGSSFGHGP 372 L K + + +T D + LL + VV GS FG P Sbjct: 454 -RIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVP 498 >gnl|CDD|131432 TIGR02379, ECA_wecE, TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). Length = 376 Score = 50.6 bits (121), Expect = 8e-07 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 107 ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK 166 AL+ + GDEV++P +VS + L G VFVD + D + +E AIT +TK Sbjct: 63 ALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRP-DTMNIDETLIESAITHRTK 121 Query: 167 WLFLNSPSNPSGVVYSQNRLRALAD 191 + P + +GV + + ALA+ Sbjct: 122 AI---VPVHYAGVACDMDTIMALAN 143 >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated. Length = 433 Score = 48.0 bits (115), Expect = 4e-06 Identities = 79/313 (25%), Positives = 129/313 (41%), Gaps = 53/313 (16%) Query: 45 MPENVKYAVVR-AMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV 103 +P+ +K V M+ Y G+ RE + E + T D II Sbjct: 49 IPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDII-------- 100 Query: 104 IFNAL---MATV--NMGDE--VLIPRPYWVSYPDM----VALCGGIPVFVDTQQDDNFQV 152 FN L +A + + E V+ P P +Y A G PV ++N+ Sbjct: 101 FFNGLGDAIAKIYGLLRREARVIGPSP---AYSTHSSAEAAHAGYPPVTYRLDPENNWYP 157 Query: 153 SPEKLEQAITPKTKW-------LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDD 205 + LE K K+ L +N P NP+G VY + LR + D+ R + II D+ Sbjct: 158 DLDDLEN----KVKYNPSIAGILLIN-PDNPTGAVYPKEILREIVDI-AREYDLFIICDE 211 Query: 206 IYEHIVY---RNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG----YAAGALSLI 258 IY +IVY + S ++ P + + G+SK G R G Y A + Sbjct: 212 IYNNIVYNGKKTVPLSEVIGDVPGIALK-----GISKELPWPGSRCGWIEVYNADKDEVF 266 Query: 259 KSMI-VLQGQQTSGACS--IAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVP 313 K I + + CS + Q A ++ P ++++ K +E R ++ +L+ VP Sbjct: 267 KKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVP 326 Query: 314 GIRYMIPDGAFYL 326 G++ +GAFY+ Sbjct: 327 GLKVNRTNGAFYM 339 >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional. Length = 311 Score = 47.8 bits (114), Expect = 5e-06 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 23/148 (15%) Query: 115 GDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPS 174 +V+IPR + Y + + +D PEKLE+ + + +F +P+ Sbjct: 77 DRKVIIPRHTYGEYERVARFFAAR---IIKGPND-----PEKLEELVERNS-VVFFCNPN 127 Query: 175 NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIV--YRNCQFSNIVNVEPSLYERTL 232 NP G Y+ L+ L D V + + +I D+ + V + + NI+ + RT Sbjct: 128 NPDGKFYNFKELKPLLDA-VEDRNALLILDEAFIDFVKKPESPEGENIIKL------RTF 180 Query: 233 VVNGVSKAYAMTGLRIGYAAGALSLIKS 260 +K+Y + G+R+GY G +S Sbjct: 181 -----TKSYGLPGIRVGYVKGFEEAFRS 203 >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase. Length = 407 Score = 44.4 bits (105), Expect = 5e-05 Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 22/165 (13%) Query: 64 YTAVAGISPLREAIVEKF-RRDNDLHYTSD--QIIVGTGAKHVIFNALMATV-NMGDEVL 119 Y+ G+ +R+ + E RRD Y SD I + GA + L A + D VL Sbjct: 103 YSDSRGLPGVRKEVAEFIERRDG---YPSDPELIFLTDGASKGVMQILNAVIRGEKDGVL 159 Query: 120 IPRPYWVSYPDMVALCGG--IPVFVDTQQDDNFQVSPEKLEQA--------ITPKTKWLF 169 +P P + Y ++L GG +P +++ + +N+ + L Q+ IT + + Sbjct: 160 VPVPQYPLYSATISLLGGTLVPYYLE--ESENWGLDVNNLRQSVAQARSKGITVRA-MVI 216 Query: 170 LNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN 214 +N P NP+G S+ LR + + V ++ D++Y+ +Y++ Sbjct: 217 IN-PGNPTGQCLSEANLREILKFCYQERLV-LLGDEVYQQNIYQD 259 >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional. Length = 356 Score = 43.5 bits (103), Expect = 9e-05 Identities = 29/105 (27%), Positives = 61/105 (58%), Gaps = 6/105 (5%) Query: 146 QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDD 205 + D +Q++ + + +A+TP LFL +P+NP+G++ + L+A+A+ ++ ++ +I D+ Sbjct: 125 EADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAER-CKSLNIALILDE 182 Query: 206 IYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY 250 + + F + P L+ V+ ++K YA+ GLR+GY Sbjct: 183 AFIDFIPDETGFIPQLADNPHLW----VLRSLTKFYAIPGLRLGY 223 >gnl|CDD|179878 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional. Length = 364 Score = 43.3 bits (102), Expect = 1e-04 Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 31/250 (12%) Query: 90 TSDQIIVGTGAKHVIFNALMATVNMG-DEVLIPRPYWVSYPDMVALCG---GIPV----F 141 +Q+++G G+ I + A G D VL+ P + M A+C P+ Sbjct: 75 APEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVF----GMYAVCARLQNAPLVEVPL 130 Query: 142 VDTQQDDNFQVS-PEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVH 200 VD D F P + A+ K +FL SPSNP+G + +++ L V Sbjct: 131 VDGA--DGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALV- 187 Query: 201 IISDDIYEHIVYRNCQFSNIVNVEPSL--YERTLVVNGVSKAYAMTGLRIGYAAGALSLI 258 + D+ Y +FS++ + L Y+ V+ +SKA+A+ RIG LI Sbjct: 188 -VVDEAY-------GEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELI 239 Query: 259 KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYR--RDLCVAQLQGVPGIR 316 + Q A A +AL+ V R++ E R R+ A L +PG+R Sbjct: 240 AVLRRCQAPYPVPTPCAA--LAEQALS-APALAVTARRVAEVRAERERLHAALAQLPGVR 296 Query: 317 YMIPDGAFYL 326 + P +L Sbjct: 297 RVYPSQGNFL 306 >gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional. Length = 431 Score = 42.3 bits (100), Expect = 2e-04 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 24/123 (19%) Query: 99 GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCG--GIPVFVDTQQDDNFQVSPEK 156 GA I L A + GD V + P ++S +M+ G PV VD + + PEK Sbjct: 149 GAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-----MQPEK 203 Query: 157 LEQA---------ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY 207 LE+A +TP+ NP+G S R AL ++L R P V +I DD + Sbjct: 204 LERALAQGARAVILTPRAH--------NPTGCSLSARRAAALRNLLARYPQVLVIIDDHF 255 Query: 208 EHI 210 + Sbjct: 256 ALL 258 >gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed. Length = 366 Score = 41.6 bits (98), Expect = 4e-04 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 7/38 (18%) Query: 139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176 V+V+T S + +EQAITP TK +F+ +P+NP Sbjct: 118 FVYVNTA-------SLKAIEQAITPNTKAIFIETPTNP 148 >gnl|CDD|180050 PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional. Length = 353 Score = 41.3 bits (98), Expect = 4e-04 Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 35/196 (17%) Query: 73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132 LR+AI + +Q+ VG G+ V+ +A +A N +L P ++Y Sbjct: 65 LRQAIAAYY------GLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPD---ITYSFYP 115 Query: 133 ALCG--GIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALA 190 G GIP + + DD+F + E + P +F N P+ P+G+ L + Sbjct: 116 VYAGLYGIP-YEEIPLDDDFSIDVEDY---LRPNGGIIFPN-PNAPTGIALP---LAEIE 167 Query: 191 DVLVRNPHVHIISDDIY-----EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG 245 +L NP ++ D+ Y E + +++ P+L LVV SK+ ++ G Sbjct: 168 RILAANPDSVVVIDEAYVDFGGESAI-------PLIDRYPNL----LVVQTFSKSRSLAG 216 Query: 246 LRIGYAAGALSLIKSM 261 LR+G+A G LI+++ Sbjct: 217 LRVGFAIGHPELIEAL 232 >gnl|CDD|180956 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated. Length = 360 Score = 41.2 bits (97), Expect = 5e-04 Identities = 39/185 (21%), Positives = 79/185 (42%), Gaps = 20/185 (10%) Query: 71 SPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD 130 LR A+ + + + I+ G GA ++ A + V + P + Y Sbjct: 60 RELRLALAQHHQLP------PEWILPGNGAAELLTWA-GRELAQLRAVYLITPAFGDYRR 112 Query: 131 MVALCGG----IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRL 186 + G +P+ +D Q + + L +TP L LN+P NP+G ++S+ + Sbjct: 113 ALRAFGATVKELPLPLD-QPSPGLTLRLQTLPPQLTPNDG-LLLNNPHNPTGKLWSREAI 170 Query: 187 RALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL 246 L + ++ D+ + + + + S I + Y +++ ++K Y++ GL Sbjct: 171 LPLLEQFAL-----VVVDEAFMDFLPPDAEQSLIPCLAE--YPNLIILRSLTKFYSLPGL 223 Query: 247 RIGYA 251 R+GYA Sbjct: 224 RLGYA 228 >gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase; Provisional. Length = 369 Score = 40.8 bits (96), Expect = 7e-04 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 15/131 (11%) Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ 216 L+ A ++L +P NP G + + A + L ++ D+ Y C+ Sbjct: 148 LDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEAL--PETTLLVLDEAY-------CE 198 Query: 217 F---SNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGAC 273 ++ + + SKAY + G R+GYA GA IK+ ++ G Sbjct: 199 TAPAGAAPPIDTDD-PNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNH--FGMN 255 Query: 274 SIAQWAAVEAL 284 IAQ AA+ AL Sbjct: 256 RIAQAAALAAL 266 >gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated. Length = 427 Score = 40.1 bits (94), Expect = 0.001 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 24/116 (20%) Query: 97 GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGG-IPVFVDTQQDDNFQV--- 152 G A+ ++F+ L+ GDE + R L GG I F + +QV Sbjct: 87 GHAAQFLVFHTLLQP---GDEFIAAR----------KLYGGSINQFGHAFKSFGWQVRWA 133 Query: 153 ---SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDD 205 P E+AITP+TK +F+ S +NP G V + A+A+V + +I D+ Sbjct: 134 DADDPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEV-AHRAGLPLIVDN 185 >gnl|CDD|179558 PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional. Length = 368 Score = 39.5 bits (93), Expect = 0.002 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 24/123 (19%) Query: 141 FVDTQQDDNFQVSPEKLEQAIT---PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNP 197 +V+ + +F + + AI P +FL SP+NP+G + + A+ D P Sbjct: 136 WVEGPRAADFTLDVDAAVAAIAEHRPDV--VFLTSPNNPTGTALPLDDVEAILDAA---P 190 Query: 198 HVHIISDDIYEHIVYRNCQFSNIVNVEPSL------YERTLVVNGVSKAYAMTGLRIGYA 251 + ++ D+ Y +F + PS Y R +V +SKA+A G R+GY Sbjct: 191 GIVVV-DEAYA-------EFRR--SGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL 240 Query: 252 AGA 254 A A Sbjct: 241 AAA 243 >gnl|CDD|185305 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional. Length = 438 Score = 38.3 bits (90), Expect = 0.003 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Query: 136 GGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFL 170 G +PVFVD + + + LE A++PKTK + + Sbjct: 132 GLVPVFVDVELP-TYNIDASLLEAAVSPKTKAIMI 165 >gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated. Length = 390 Score = 36.9 bits (86), Expect = 0.011 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 20/96 (20%) Query: 104 IFNALMATVNMGDEVLIPRPYWVSYPDMVALCG------GIPV-FVDTQQDDNFQVSPEK 156 I +MA + GD V+ R + S V+L GI FVD + Sbjct: 89 ILAVVMALLQAGDHVVSSRSLFGS---TVSLFEKIFARFGIETTFVD-------LTDLDA 138 Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192 A+ P TK FL +PSNP + + ALA++ Sbjct: 139 WRAAVRPNTKLFFLETPSNPLTELAD---IAALAEI 171 >gnl|CDD|130392 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. Length = 380 Score = 36.4 bits (84), Expect = 0.012 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 20/96 (20%) Query: 104 IFNALMATVNMGDEVLIPRPYWVSYPDMVALCG------GIPV-FVDTQQDDNFQVSPEK 156 I ALM + GD V+ R + S V GI V FVD D Sbjct: 82 IQAALMTLLQAGDHVVASRSLFGS---TVGFISEILPRFGIEVSFVDP--TD-----LNA 131 Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192 E A+ P TK +F+ +PSNP G + + ALA++ Sbjct: 132 WEAAVKPNTKLVFVETPSNPLGELVD---IAALAEL 164 >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated. Length = 409 Score = 36.0 bits (84), Expect = 0.018 Identities = 88/365 (24%), Positives = 128/365 (35%), Gaps = 83/365 (22%) Query: 73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132 LRE I E + ++D+I + GAK N ++ + + + P + Y D Sbjct: 81 LREKIAENDYQARGCDISADEIFISDGAKCDTGN-ILDIFGPDNTIAVTDPVYPVYVDTN 139 Query: 133 ALCGGIPVFVDTQQDDNFQVSPEKLEQAITP-----KTKWLFLNSPSNPSGVVYSQNRLR 187 + G + + P E P K ++L P+NP+G V ++ +L+ Sbjct: 140 VMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLK 199 Query: 188 ALADVLVRNPHVHIISDDIYE---------HIVY-----RNCQFSNIVNVEPSLYERTLV 233 A D N + I+ D YE H +Y R C +E Sbjct: 200 AWVDYAKENGSL-ILFDAAYEAFISDPSLPHSIYEIEGARECA------IE--------- 243 Query: 234 VNGVSKAYAMTGLRIGY------------AAGALSLIKSMIVLQGQQTSGACSIAQWAAV 281 SK TG R Y +SL Q + +G I Q AA Sbjct: 244 FRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAA- 302 Query: 282 EALNGPQ---------DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQD 332 EA+ P+ D+ + N KI R L A + G A Y Sbjct: 303 EAVYSPEGKAQIKELIDYYMENAKII--REGLESAGFEVYGG------VNAPY------- 347 Query: 333 LIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS----IRISYAVSDAILEEA 388 I K+P G + DF + LL+ V GS F GPS R+S S + EA Sbjct: 348 -IWVKTPDG---MSSWDFFDKLLQEANVVGTPGSGF--GPSGEGYFRLSAFGSRENVLEA 401 Query: 389 CVRIK 393 RIK Sbjct: 402 MERIK 406 >gnl|CDD|181165 PRK07908, PRK07908, hypothetical protein; Provisional. Length = 349 Score = 35.7 bits (83), Expect = 0.019 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 23/121 (19%) Query: 173 PSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEP-SLYERT 231 P+NP+ V++ +L AL R P ++ D+ F++ V EP SL Sbjct: 148 PTNPTSVLHPAEQLLAL-----RRPGRILVVDE----------AFADAVPGEPESLAGDD 192 Query: 232 ----LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP 287 LV+ ++K +++ GLR+GYA GA ++ L + Q A+ A P Sbjct: 193 LPGVLVLRSLTKTWSLAGLRVGYALGAPDVLAR---LTRGRAHWPVGTLQLEAIAACCAP 249 Query: 288 Q 288 + Sbjct: 250 R 250 >gnl|CDD|181321 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated. Length = 431 Score = 34.8 bits (80), Expect = 0.035 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 12/72 (16%) Query: 137 GIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVR 195 GI V FVD PE E AIT KTK LF + NP G V + A+A + Sbjct: 128 GITVKFVDPS-------DPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHE 177 Query: 196 NPHVHIISDDIY 207 + + +I D+ + Sbjct: 178 H-GIPLIVDNTF 188 >gnl|CDD|162303 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378 Score = 34.8 bits (80), Expect = 0.039 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 7/41 (17%) Query: 136 GGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176 G + V VDT +K++ A+ PKTK + L SP+NP Sbjct: 110 GVVVVHVDTT-------DLDKVKAALGPKTKLVLLESPTNP 143 >gnl|CDD|185584 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional. Length = 404 Score = 34.9 bits (81), Expect = 0.042 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 13/164 (7%) Query: 47 ENVKYAVVRAMERGETK-YTAVAGISPLREAIV-----EKFRRDNDLHYTSDQIIVGTGA 100 E+V+ A E+ K Y + G+ EA E + + Q + GTGA Sbjct: 50 ESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGA 109 Query: 101 KHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPV-----FVDTQQDDNFQVSPE 155 + F L + G V + P W ++ ++ G+ V + + +F E Sbjct: 110 LRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK-SAGLNVKEYRYYDPKTKGLDFDGMLE 168 Query: 156 KLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHV 199 L A + L NP+GV ++ + + +ADV+ R + Sbjct: 169 DLRTA-PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLI 211 >gnl|CDD|162358 TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. Length = 363 Score = 34.3 bits (79), Expect = 0.054 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Query: 108 LMATVNMGDEVLIPRPYWVSY----PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP 163 L + +EV++P+ + V Y MV L GG V + S E+LE AIT Sbjct: 92 LHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYAN----ECSAEQLEAAITE 147 Query: 164 KT 165 KT Sbjct: 148 KT 149 >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional. Length = 370 Score = 34.2 bits (79), Expect = 0.055 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 38/134 (28%) Query: 160 AITPKTKWLFLNSPSNPSGVVYSQNRLR-ALAD------VLVRNPHVHIISDDIYEHIVY 212 A P +++ +P+NP+G V + + LA+ +LV D+ Y H Sbjct: 161 AADPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLV---------DEAYIH--- 208 Query: 213 RNCQFSNIVNVEPSLYERT------LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQG 266 FS+ PS+ + +V+ SK Y M G+R+G AA L+ + G Sbjct: 209 ----FSD----APSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKL-ARFG 259 Query: 267 QQ----TSGACSIA 276 + A +A Sbjct: 260 HNPLPVPAAAAGLA 273 >gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional. Length = 377 Score = 34.3 bits (79), Expect = 0.060 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 11/74 (14%) Query: 107 ALMATVNMGDEVLIPRP-YWVSYPDMVALCG--GIPV-FVDTQQDDNFQVSPEKLEQAIT 162 A+M + GD V++ Y +Y M + GI FVDT + E++E+AI Sbjct: 80 AVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS-------NLEEVEEAIR 132 Query: 163 PKTKWLFLNSPSNP 176 P TK +++ +P+NP Sbjct: 133 PNTKAIYVETPTNP 146 >gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated. Length = 380 Score = 32.9 bits (75), Expect = 0.13 Identities = 11/22 (50%), Positives = 17/22 (77%) Query: 155 EKLEQAITPKTKWLFLNSPSNP 176 ++++AI P TK L+L +PSNP Sbjct: 125 SQIKKAIKPNTKALYLETPSNP 146 >gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed. Length = 398 Score = 32.4 bits (74), Expect = 0.21 Identities = 11/23 (47%), Positives = 16/23 (69%) Query: 155 EKLEQAITPKTKWLFLNSPSNPS 177 + E+A+ P TK FL SP+NP+ Sbjct: 141 DNWEKAVRPNTKVFFLESPTNPT 163 >gnl|CDD|178277 PLN02672, PLN02672, methionine S-methyltransferase. Length = 1082 Score = 32.4 bits (74), Expect = 0.23 Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Query: 144 TQQDDNFQVSPEKLEQAITPKTK-WLFLNSPS-NPSGVVYSQNRLRALADV 192 T+ D F+++ + L + K W++++ P+ NP+G++YS + + + V Sbjct: 807 TKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSV 857 >gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. Length = 418 Score = 32.3 bits (74), Expect = 0.25 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 8/41 (19%) Query: 137 GIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176 GI V FVD DD PE+ E+AI TK +F + NP Sbjct: 121 GIEVRFVD--PDD-----PEEFEKAIDENTKAVFAETIGNP 154 >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. Length = 376 Score = 30.8 bits (70), Expect = 0.62 Identities = 10/29 (34%), Positives = 20/29 (68%) Query: 152 VSPEKLEQAITPKTKWLFLNSPSNPSGVV 180 +SPE++++AI TK + ++ SN +G + Sbjct: 125 ISPERIKRAIKTNTKLIVVSHASNVTGTI 153 >gnl|CDD|179321 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional. Length = 351 Score = 30.3 bits (69), Expect = 0.84 Identities = 27/103 (26%), Positives = 56/103 (54%), Gaps = 8/103 (7%) Query: 148 DNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY 207 DN+Q+ + + K +++ SP+NP+G + + LR L + L R + +++D+ Y Sbjct: 130 DNWQLDLPAIADNLD-GVKVVYVCSPNNPTGNLINPQDLRTLLE-LTRGKAI-VVADEAY 186 Query: 208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY 250 I + C +++ + Y +++ +SKA+A+ GLR G+ Sbjct: 187 --IEF--CPQASLAG-WLAEYPHLVILRTLSKAFALAGLRCGF 224 >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional. Length = 356 Score = 30.2 bits (69), Expect = 0.94 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 30/174 (17%) Query: 94 IIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVS 153 +++G G+ +I +A G VL P P +V Y M A G+ FV +F + Sbjct: 84 VLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYR-MSAKLAGLE-FVGVPLTADFTLD 141 Query: 154 PEKLEQAI-TPKTKWLFLNSPSNPSGVVYSQNRLRAL---ADVLVRNPHVHIISDDIY-- 207 + AI + +FL P+NP+G ++ + + A LV + D+ Y Sbjct: 142 LPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLV-------VVDEAYQP 194 Query: 208 ---EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI 258 + + R +F N+ LV+ VSK + GLR+GY AG + I Sbjct: 195 FAGDSWLPRLARFPNL-----------LVMRTVSK-LGLAGLRLGYLAGHPAWI 236 >gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional. Length = 403 Score = 30.2 bits (68), Expect = 0.99 Identities = 9/24 (37%), Positives = 17/24 (70%) Query: 154 PEKLEQAITPKTKWLFLNSPSNPS 177 P L+ AI+ KT+ ++ +P+NP+ Sbjct: 140 PAALKAAISDKTRMVYFETPANPN 163 >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional. Length = 354 Score = 30.0 bits (68), Expect = 1.1 Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 10/104 (9%) Query: 147 DDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI 206 ++Q+ + +EQ K +F+ +P+NP+G V + + L ++ P ++ D+ Sbjct: 132 TADYQLPLDYIEQL--DGAKLVFICNPNNPTGTVIDRADIEQLIEMT---PDAIVVVDEA 186 Query: 207 YEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY 250 Y I + C ++ ++ S Y +V+ +SKA+A+ G R G+ Sbjct: 187 Y--IEF--CPEYSVADLLAS-YPNLVVLRTLSKAFALAGARCGF 225 >gnl|CDD|181754 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated. Length = 592 Score = 29.8 bits (68), Expect = 1.2 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 5/46 (10%) Query: 243 MTGLRIGYAAGAL-SLIKS----MIVLQGQQTSGACSIAQWAAVEA 283 M GL YAA L +K + L TSG + AVEA Sbjct: 176 MAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEA 221 >gnl|CDD|151645 pfam11203, DUF2984, Protein of unknown function (DUF2984). Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Length = 97 Score = 29.7 bits (67), Expect = 1.3 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 14 SATLVAAQRVRD-LRSKGIDVLCLTAGE 40 + A +R+ D L +GI LTA E Sbjct: 35 RTLVAATRRLADALAEQGIRARPLTADE 62 >gnl|CDD|181129 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional. Length = 388 Score = 29.6 bits (67), Expect = 1.3 Identities = 9/23 (39%), Positives = 17/23 (73%) Query: 154 PEKLEQAITPKTKWLFLNSPSNP 176 + + AITP+TK +++ +P+NP Sbjct: 136 LDAVRAAITPRTKLIWVETPTNP 158 >gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. Length = 380 Score = 29.6 bits (67), Expect = 1.4 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 98 TGAKH-VIFNA---------LMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQD 147 GAK+ V FN+ L V GD V +V+ + CG FVD D Sbjct: 42 VGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPD 101 Query: 148 DNFQVSPEKLEQAIT 162 + + LE+ + Sbjct: 102 TG-NIDEDALEKKLA 115 >gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional. Length = 388 Score = 29.5 bits (66), Expect = 1.8 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 7/36 (19%) Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176 FVD Q L+ A+ K K + L +PSNP Sbjct: 122 FVD-------QSDAAALDAALAKKPKLILLETPSNP 150 >gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. Length = 382 Score = 29.0 bits (65), Expect = 2.2 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 7/36 (19%) Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176 FVD Q D + L A+ K K + + +PSNP Sbjct: 120 FVD--QGDE-----QALRAALAQKPKLVLIETPSNP 148 >gnl|CDD|181128 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional. Length = 403 Score = 28.9 bits (65), Expect = 2.5 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 11/77 (14%) Query: 104 IFNALMATVNMGDEVLIPRPYW----VSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ 159 +F AL A + GD ++ R + V +++ G VFVD + + E+ Sbjct: 98 VFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGED-------LSQWEE 150 Query: 160 AITPKTKWLFLNSPSNP 176 A++ T+ +F +PSNP Sbjct: 151 ALSVPTQAVFFETPSNP 167 >gnl|CDD|150909 pfam10312, Cactin_mid, Conserved mid region of cactin. This is the conserved middle region of a family of proteins referred to as cactins. The region contains two of three predicted coiled-coil domains. Most members of this family have a CactinC_cactus pfam09732 domain at the C-terminal end. Upstream of Mid_cactin in Drosophila members are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Length = 190 Score = 28.4 bits (64), Expect = 3.3 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 9/49 (18%) Query: 22 RVRDLRSKGIDVLCLTA----GEPDFDMPENVKYAV-----VRAMERGE 61 R+++ R+K ID+L E D + + Y V V +E E Sbjct: 31 RIKEGRAKPIDLLARNLRFIDPEKDVEFDLHEPYTVLEGLTVDELEELE 79 >gnl|CDD|178493 PLN02905, PLN02905, beta-amylase. Length = 702 Score = 28.4 bits (63), Expect = 3.6 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 5/24 (20%) Query: 113 NMGDEVLIPRPYWV-----SYPDM 131 N+GD+V IP P+WV S PD+ Sbjct: 351 NVGDDVCIPLPHWVAEIGRSNPDI 374 >gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional. Length = 386 Score = 28.3 bits (63), Expect = 3.9 Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 153 SPEKLEQAITPKTKWLFLNSPSNPS 177 + +E I P TK +F+ +P NP+ Sbjct: 135 TEADIENKIRPNTKLIFVETPINPT 159 >gnl|CDD|181130 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated. Length = 436 Score = 28.2 bits (63), Expect = 4.1 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%) Query: 137 GIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192 GI V FV+ D + A+ P TK F + SNP V + +A+V Sbjct: 133 GIEVSFVEDPDD------LDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEV 180 >gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase. Length = 464 Score = 28.1 bits (62), Expect = 4.7 Identities = 10/22 (45%), Positives = 17/22 (77%) Query: 155 EKLEQAITPKTKWLFLNSPSNP 176 +++ AI P+TK ++L SP+NP Sbjct: 208 DEVAAAIGPQTKLVWLESPTNP 229 >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated. Length = 265 Score = 27.5 bits (61), Expect = 5.8 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 302 RDLCVA--QLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL----- 354 R+L +A Q+Q +R+++ G + + DL + + T+LD L Sbjct: 36 RELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMY 95 Query: 355 ----LEIEKVAVVQGSSFG 369 L+I +AVVQG++FG Sbjct: 96 NLYRLKIPTLAVVQGAAFG 114 >gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. Length = 353 Score = 27.5 bits (61), Expect = 5.8 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 152 VSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNP 197 + ++L AI P T + + +N +G + +R +A+VL + Sbjct: 126 IDVDELADAIRPDTLLVSIMHVNNETGSI---QPIREIAEVLEAHE 168 >gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. Length = 391 Score = 27.5 bits (61), Expect = 6.0 Identities = 8/25 (32%), Positives = 16/25 (64%) Query: 153 SPEKLEQAITPKTKWLFLNSPSNPS 177 PE+++ I TK ++ +P+NP+ Sbjct: 133 IPEEVKAHIKDNTKIVYFETPANPT 157 >gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional. Length = 386 Score = 27.6 bits (61), Expect = 6.2 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 7/36 (19%) Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176 FVD Q + L A+ K K + + SPSNP Sbjct: 121 FVD-------QGDEQALRAALAEKPKLVLVESPSNP 149 >gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated. Length = 425 Score = 27.6 bits (61), Expect = 6.2 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVR 195 LE I +TK +F S NP+G + ++ALAD R Sbjct: 136 LEALIDERTKAVFCESIGNPAGNIID---IQALADAAHR 171 >gnl|CDD|182617 PRK10649, PRK10649, hypothetical protein; Provisional. Length = 577 Score = 27.4 bits (61), Expect = 7.0 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 118 VLIPRP--YWVSYPDMVALCGGIPVFVDT-QQDDNFQVSPEKLEQAITPKTKWLFLNS 172 V IP P Y VS+ + L P+ ++T + F+ + +KL + P W FL Sbjct: 145 VYIPWPWRYVVSFALLYGLILH-PIAMNTFIKHKPFEKTLDKLASRMEPAAPWQFLTG 201 >gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional. Length = 1485 Score = 27.1 bits (61), Expect = 7.3 Identities = 26/98 (26%), Positives = 29/98 (29%), Gaps = 28/98 (28%) Query: 70 ISPLREAIVEKF-----RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPY 124 I PLREA V R N T A VIF + VL Sbjct: 521 IDPLREAHVMSLATCIGREMNVFCETEGH------AHRVIFKS---------PVL----- 560 Query: 125 WVSYPDMVALCG-GIPVFVDTQQDDNFQVSPEKLEQAI 161 SY D L + D N+ LE AI Sbjct: 561 --SYSDFKQLTTLDEEHYRADTLDLNYDPEETGLEAAI 596 >gnl|CDD|181218 PRK08064, PRK08064, cystathionine beta-lyase; Provisional. Length = 390 Score = 27.0 bits (60), Expect = 8.1 Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 155 EKLEQAITPKTKWLFLNSPSNP 176 E++ Q I P TK ++ +PSNP Sbjct: 129 EEVAQNIKPNTKLFYVETPSNP 150 >gnl|CDD|148302 pfam06616, BsuBI_PstI_RE, BsuBI/PstI restriction endonuclease C-terminus. This family represents the C-terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (EC:3.1.21.4). The enzymes of the BsuBI restriction/modification (R/M) system recognize the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system. Length = 306 Score = 26.9 bits (60), Expect = 9.8 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 14/68 (20%) Query: 50 KYAVVRAMER-------GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIV---GTG 99 YA RA +R G+T + S L +A++E+F + ++ TG Sbjct: 136 AYASARAQDRIPVTFPNGKTITLSPGPSSELIKAVIEEFAP----RFLPGPAVLYLGDTG 191 Query: 100 AKHVIFNA 107 K V F+ Sbjct: 192 NKVVYFDD 199 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.137 0.406 Gapped Lambda K H 0.267 0.0731 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,742,328 Number of extensions: 448182 Number of successful extensions: 1334 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1092 Number of HSP's successfully gapped: 147 Length of query: 400 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 305 Effective length of database: 3,941,713 Effective search space: 1202222465 Effective search space used: 1202222465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.1 bits)