RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780602|ref|YP_003065015.1| aspartate aminotransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (400 letters)



>gnl|CDD|180244 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
          Length = 393

 Score =  586 bits (1514), Expect = e-168
 Identities = 208/399 (52%), Positives = 271/399 (67%), Gaps = 7/399 (1%)

Query: 1   MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG 60
           M+ +S  + RV PSATL    + ++L+++G DV+ L AGEPDFD PE++K A + A++ G
Sbjct: 1   MMKLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDG 60

Query: 61  ETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLI 120
           +TKYT  AGI  LREAI  K +RDN L Y   Q+IV TGAK  ++NA MA ++ GDEV+I
Sbjct: 61  KTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVII 120

Query: 121 PRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180
           P PYWVSYP+MV L GG+PVFV T +++ F+++ E+LE AITPKTK L LNSPSNP+G V
Sbjct: 121 PAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAV 180

Query: 181 YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA 240
           YS   L A+ADV V +  + ++SD+IYE +VY   +F++I ++ P L +RT+ VNG SKA
Sbjct: 181 YSPEELEAIADVAVEH-DIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKA 239

Query: 241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEY 300
           YAMTG R+GYAAG   LIK+M  LQ   TS   SIAQ+AAV ALNGPQD V   R+ FE 
Sbjct: 240 YAMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEE 299

Query: 301 RRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKV 360
           RRDL V  L  +PG+    P+GAFY++P+   L+GK       I   L+F   LLE   V
Sbjct: 300 RRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKS------ITDSLEFAEALLEEAGV 353

Query: 361 AVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL 399
           AVV G +FG    +R+SYA S   LEE   RI+RF  SL
Sbjct: 354 AVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESL 392


>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional.
          Length = 402

 Score =  529 bits (1364), Expect = e-151
 Identities = 206/391 (52%), Positives = 268/391 (68%)

Query: 9   RRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVA 68
            R++PS +  AA R R+LR+ G  ++ LT GEPDFD P+++K A V A+ERGETKYT V 
Sbjct: 11  SRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVN 70

Query: 69  GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSY 128
           G   LR+AI+ K  R N LHY  ++I VG GAK  IF ALMAT+  GDEV+IP PYWVSY
Sbjct: 71  GTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSY 130

Query: 129 PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRA 188
           PDMV    G PV V   ++  F+++PE LE AITP+T+WL LN+PSNP+G VYS+  LRA
Sbjct: 131 PDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRA 190

Query: 189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRI 248
           LADVL+R+PHV +++DDIY+HI + +    +++   P L +R LV NGVSK YAMTG RI
Sbjct: 191 LADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRI 250

Query: 249 GYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQ 308
           GYAAG   LI ++  LQ Q +S   SI+Q AA  ALNG Q FV  +  +++ RRD  +A 
Sbjct: 251 GYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALAL 310

Query: 309 LQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF 368
           L  +PG+  ++PDGAFYLY +C  LIGK +P G V+ TD D V  LL+   VAVVQG+++
Sbjct: 311 LNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAY 370

Query: 369 GHGPSIRISYAVSDAILEEACVRIKRFCHSL 399
           G  P  R+S A S   LEEAC RI+R   +L
Sbjct: 371 GLSPYFRLSIATSLETLEEACARIERAVAAL 401


>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
          Length = 378

 Score =  279 bits (715), Expect = 1e-75
 Identities = 147/396 (37%), Positives = 224/396 (56%), Gaps = 25/396 (6%)

Query: 10  RVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAG 69
            +QPS      ++  DL +    V+ L  GEPDF  P NV+ A +R++E+G T YTA AG
Sbjct: 3   SLQPSGI----RKFFDLAANMEGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAG 58

Query: 70  ISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSY 128
           +  LR+ I +  ++   + Y  + +IIV  GA   +  A+ A +N GDEVLI  P +VSY
Sbjct: 59  LLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSY 118

Query: 129 PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRA 188
             +V L GG+PV V T  ++ F+V P ++E AIT KTK + L SP+NP+G V +++ L  
Sbjct: 119 APLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEE 178

Query: 189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRI 248
           +A V+V    + ++SD+IY  + Y    +++  ++   + ERT++++G SK +AMTG R+
Sbjct: 179 IA-VIVEKHDLIVLSDEIYAELTYDE-AYTSFASI-KGMRERTILISGFSKGFAMTGWRL 235

Query: 249 GYAAGALSLIKSMIVLQGQQTSGAC--SIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCV 306
           G+ A  +   ++M  L+  Q S  C  ++AQ+AA+EAL    D V+  R  +  RR+  V
Sbjct: 236 GFIAAPVYFSEAM--LKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFV 293

Query: 307 AQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS 366
                + G+   +P GAFY +PS          +G    +  +F   LL  EKVAVV GS
Sbjct: 294 TSFNEI-GLTCHVPGGAFYAFPSIS-------STG---LSSEEFAEQLLLEEKVAVVPGS 342

Query: 367 SFGHGPS--IRISYAVSDAILEEACVRIKRFCHSLQ 400
            FG      IR SYA S   L+EA  R+KRF  + +
Sbjct: 343 VFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENKK 378


>gnl|CDD|181083 PRK07683, PRK07683, aminotransferase A; Validated.
          Length = 387

 Score =  265 bits (679), Expect = 2e-71
 Identities = 143/393 (36%), Positives = 216/393 (54%), Gaps = 31/393 (7%)

Query: 21  QRVRDLRSKGI-----------DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAG 69
            RV+D++  GI           +++ LT G+PDF  P +VK A  RA+    T YT  AG
Sbjct: 7   PRVKDIQISGIRQFSNMVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAG 66

Query: 70  ISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSY 128
           +  LR+A     +   DLHY+ + +IIV  GA   I  A    +  G EV++P P +  Y
Sbjct: 67  LLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGY 126

Query: 129 PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRA 188
             ++ LCG  PVF+DT+    F+++ E LE AIT KT+ + L  PSNP+GV  S+  L+ 
Sbjct: 127 EPIIRLCGAKPVFIDTRST-GFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQD 185

Query: 189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRI 248
           +ADVL ++ ++ ++SD+IY  +VY     S  +   P + E+T+V+NG+SK+++MTG RI
Sbjct: 186 IADVL-KDKNIFVLSDEIYSELVYEQPHTS--IAHFPEMREKTIVINGLSKSHSMTGWRI 242

Query: 249 GYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQ 308
           G+      L K ++ +     + A SI+Q+AA+EAL   +D     R  ++ RRD    +
Sbjct: 243 GFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNR 302

Query: 309 LQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF 368
           L  + G+    P GAFYL+PS    IG  + S        DF   L+E   +AVV GS+F
Sbjct: 303 LISM-GLDVEKPTGAFYLFPS----IGHFTMS------SFDFALDLVEEAGLAVVPGSAF 351

Query: 369 ---GHGPSIRISYAVSDAILEEACVRIKRFCHS 398
              G G  +R+SYA S   L+E   R++ F   
Sbjct: 352 SEYGEG-YVRLSYAYSIETLKEGLDRLEAFLQQ 383


>gnl|CDD|180923 PRK07309, PRK07309, aromatic amino acid aminotransferase;
           Validated.
          Length = 391

 Score =  241 bits (618), Expect = 2e-64
 Identities = 124/370 (33%), Positives = 205/370 (55%), Gaps = 21/370 (5%)

Query: 32  DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTS 91
            +L LT GEPDF  P++VK A  RA++  ++ YT +AG+  LR+A  +  +   +L Y  
Sbjct: 31  GILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAP 90

Query: 92  -DQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF 150
            ++I+V  GA   +  +L A +  GD+VL+P P +  Y  +V L G   V +DT ++D F
Sbjct: 91  ENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTEND-F 149

Query: 151 QVSPEKLEQAITP---KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY 207
            ++PE LE+AI     K K + LN P+NP+GV YS+ +++ALADVL +   + +ISD++Y
Sbjct: 150 VLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYD-IFVISDEVY 208

Query: 208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQ 267
             + Y        V++   L ++T+++NG+SK++AMTG RIG           +I     
Sbjct: 209 SELTYTGEPH---VSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQY 265

Query: 268 QTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLY 327
             + A ++AQ+AAVEAL   +D  +  +K +  RRD  + ++  + G + + PDGAFY++
Sbjct: 266 LVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIF 324

Query: 328 PSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS--IRISYAVSDAIL 385
                   + S           F+      + VA + G++FG      +R+SYA S   +
Sbjct: 325 AKIPAGYNQDS---------FKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETI 375

Query: 386 EEACVRIKRF 395
           +EA  R+K +
Sbjct: 376 KEAMKRLKEY 385


>gnl|CDD|169403 PRK08361, PRK08361, aspartate aminotransferase; Provisional.
          Length = 391

 Score =  236 bits (603), Expect = 8e-63
 Identities = 130/385 (33%), Positives = 208/385 (54%), Gaps = 21/385 (5%)

Query: 17  LVAAQRVRDL---RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPL 73
           L+   ++R+L    SK  +V+ L  GEPDFD P+N+K A  RA++ G T YT  AGI  L
Sbjct: 16  LIQRSKIRELFERASKMENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPEL 75

Query: 74  REAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA 133
           REAI E +++   +    D +IV  GA    + A  + +  GDEV+IP P +V Y +   
Sbjct: 76  REAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAK 135

Query: 134 LCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVL 193
           +    P+ +  ++++ FQ  P++L + IT +T+ + +N P+NP+G    +   +A+AD+ 
Sbjct: 136 IAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADI- 194

Query: 194 VRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG 253
             + +++I+SD+ YEH +Y   +   ++   P   + T++ N  SK +AMTG R+G+   
Sbjct: 195 AEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP---DNTILANSFSKTFAMTGWRLGFVIA 251

Query: 254 ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDF--VVNNRKIFEYRRDLCVAQLQG 311
              +IK MI L         S  Q A +EAL   + +  V   RK +  RR L + +L+ 
Sbjct: 252 PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE 311

Query: 312 VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-H 370
           +P I+   P GAFY++ +  +  G  S          DF   LLE  +V V+ G++FG  
Sbjct: 312 MPHIKVFEPKGAFYVFANIDET-GMSSE---------DFAEWLLEKARVVVIPGTAFGKA 361

Query: 371 GPS-IRISYAVSDAILEEACVRIKR 394
           G   IRISYA S   L EA  R+++
Sbjct: 362 GEGYIRISYATSKEKLIEAMERMEK 386


>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated.
          Length = 398

 Score =  219 bits (559), Expect = 1e-57
 Identities = 126/386 (32%), Positives = 199/386 (51%), Gaps = 31/386 (8%)

Query: 24  RDLRSKGIDVLCLTAGEP---DFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK 80
           R+L  KGI V+ L  G+P   DF  PE++K A  RA++ G   Y    G+  LREAIV++
Sbjct: 23  RELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKR 82

Query: 81  FRRDNDLHYTSDQIIVGTG---AKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGG 137
            +R N +  T D + V      A  +IF AL   ++ GDE+LIP P +  Y  +V   GG
Sbjct: 83  EKRKNGVDITPDDVRVTAAVTEALQLIFGAL---LDPGDEILIPGPSYPPYTGLVKFYGG 139

Query: 138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNP 197
           +PV   T +++ +Q   + + + IT KTK + + +P+NP+G +Y +  L+ + D  +   
Sbjct: 140 VPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILD--IAGE 197

Query: 198 H-VHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA---- 252
           H + +ISD+IY+ + Y   +  +  ++   +    +V+NG+SK Y  TG R+GY      
Sbjct: 198 HDLPVISDEIYDLMTYEG-KHVSPGSLTKDV--PVIVMNGLSKVYFATGWRLGYIYFVDP 254

Query: 253 -GALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG 311
            G L+ ++  I    +      + AQ+AA+  L GP D++    K  + RRD    +L  
Sbjct: 255 EGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE 314

Query: 312 VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG 371
           +PGI    P GAFY++P  ++      P  D    D +FV  +L    V  V GS FG  
Sbjct: 315 IPGISTTKPQGAFYIFPRIEE-----GPWKD----DKEFVLDVLHEAHVLFVHGSGFGEY 365

Query: 372 PS--IRISYAVSDAILEEACVRIKRF 395
            +   R+ +     ILEEA  R + F
Sbjct: 366 GAGHFRLVFLPPVEILEEAMDRFEEF 391


>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
          Length = 384

 Score =  218 bits (557), Expect = 2e-57
 Identities = 115/385 (29%), Positives = 201/385 (52%), Gaps = 17/385 (4%)

Query: 12  QPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGIS 71
           Q    ++A   +  L  K  D++ L+ G+PD    E++  A     ++G T+YT   G  
Sbjct: 12  QMEVNIMAE--IATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDV 69

Query: 72  PLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM 131
            L E I++ + ++ DL +  ++I+   GA H ++ AL + ++ GDEV+I  PY+  Y D 
Sbjct: 70  ELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQ 129

Query: 132 VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD 191
           + + GG P+ ++T ++D FQ++ +KLE  IT KTK + LNSP+NP+G V+S+  L  +A 
Sbjct: 130 IEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAK 189

Query: 192 VLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA 251
           + +      IISD++Y+   +    F  +  +   + ERT+     SK +AMTG RIGY 
Sbjct: 190 IAIEYDLF-IISDEVYDGFSFYE-DFVPMATLA-GMPERTITFGSFSKDFAMTGWRIGYV 246

Query: 252 AGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG 311
                +I++  ++       A +I+Q AA+ AL      V   ++ F+ R +    +++ 
Sbjct: 247 IAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES 306

Query: 312 VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG 371
           +P +    P G+ Y + + +   G  S         ++F   LL+   V V+ G +FG  
Sbjct: 307 IPNLSLHPPKGSIYAFINIKK-TGLSS---------VEFCEKLLKEAHVLVIPGKAFGES 356

Query: 372 PS--IRISYAVSDAILEEACVRIKR 394
               IR++  V   +LEEA  RI++
Sbjct: 357 GEGYIRLACTVGIEVLEEAFNRIEK 381


>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
          Length = 394

 Score =  197 bits (504), Expect = 4e-51
 Identities = 120/379 (31%), Positives = 174/379 (45%), Gaps = 49/379 (12%)

Query: 39  GEPDFDMPENVKYAVVRAMERGET---KYTAVAGISPLREAIVEKFRRDNDLHYTSDQII 95
           G P    P  VK A+    E  +     Y   AG   +REAI E   R      T+D I+
Sbjct: 41  GNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIV 100

Query: 96  VGTGAK---HVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQV 152
           +  GA    +V   A++   N GDEV++  PY+V Y   V   GG  V V T   D FQ 
Sbjct: 101 MTCGAAGALNVALKAIL---NPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD-TDTFQP 156

Query: 153 SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVR-----NPHVHIISDDIY 207
             + LE AITPKTK + +NSP+NP+GVVYS+  L+ALA +L          +++ISD+ Y
Sbjct: 157 DLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPY 216

Query: 208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA------GALSLIKSM 261
             IVY   +   I       Y+ ++VV   SK+ ++ G RIGY A       A  L+ ++
Sbjct: 217 REIVYDGAEVPYI----FKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAAL 272

Query: 262 IVLQGQQTSG---ACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318
           +     +  G   A ++ Q    + L+   D       I++  RDL    L  + G   +
Sbjct: 273 V--FANRILGFVNAPALMQRVVAKCLDATVD-----VSIYKRNRDLLYDGLTEL-GFECV 324

Query: 319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY 378
            P GAFYL+P        KSP  D    D+ F     +   + +V GS FG     R+SY
Sbjct: 325 KPQGAFYLFP--------KSPEED----DVAFCEKAKK-HNLLLVPGSGFGCPGYFRLSY 371

Query: 379 AVSDAILEEACVRIKRFCH 397
            V    +E +    ++   
Sbjct: 372 CVDTETIERSLPAFEKLAK 390


>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional.
          Length = 382

 Score =  197 bits (503), Expect = 4e-51
 Identities = 119/396 (30%), Positives = 178/396 (44%), Gaps = 36/396 (9%)

Query: 19  AAQRVRDLRSKGI-----------DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAV 67
           A    R L   GI            VL L  GE D   P+ ++ A   A+  GET YT  
Sbjct: 1   ARPAARALPESGIREVANAGRGREGVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHN 60

Query: 68  AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVS 127
            GI  LREA+     R + +    ++I V +     +  A  A V  GDEV+   P W +
Sbjct: 61  LGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPN 120

Query: 128 YPDMVALCGGIPVFVDTQ-QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRL 186
                 + G   V V        + +  ++L  AITP+T+ LF+NSP+NP+G   S++ L
Sbjct: 121 LVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDL 180

Query: 187 RALADVLVRNPHVHIISDDIYEHIVY----RNCQFSNIVNVEPSLYERTLVVNGVSKAYA 242
           RA+     R   + I++D++YE + Y    R   F +I   +    +R + VN  SK +A
Sbjct: 181 RAILA-HCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPD----DRIIFVNSFSKNWA 235

Query: 243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRR 302
           MTG R+G+     +L + +  L    TS      Q AAV AL+  +DFV          R
Sbjct: 236 MTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSR 295

Query: 303 DLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTD-LDFVNGLLEIEKVA 361
           D  V  L+ +PG+    PDGA Y +                  TD L     L++   + 
Sbjct: 296 DHLVDALRALPGVEVAKPDGAMYAFFRIPG------------VTDSLALAKRLVDEAGLG 343

Query: 362 VVQGSSFGHGPS--IRISYAVSDAILEEACVRIKRF 395
           +  G++FG G    +R  +A   A L+EA  R++RF
Sbjct: 344 LAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRF 379


>gnl|CDD|168313 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
          Length = 389

 Score =  182 bits (463), Expect = 2e-46
 Identities = 113/363 (31%), Positives = 182/363 (50%), Gaps = 41/363 (11%)

Query: 46  PENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI 104
           P     A+   +   E  KY AV GI PL EAI +K ++DN +   ++Q IV T   ++ 
Sbjct: 42  PPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMA 101

Query: 105 F-NALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP 163
           F NA++A  + GDE+++  PY+ ++   + + G  P+ V T  DDN+Q+ PE +EQAITP
Sbjct: 102 FMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPT--DDNYQLQPEAIEQAITP 159

Query: 164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ-FS--NI 220
           KT+ +   SP+NP+GVVY +  LRA+  +   +   H ISD+ YE+  Y   + FS  +I
Sbjct: 160 KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYH-ISDEAYEYFTYDGVKHFSPGSI 218

Query: 221 VNVEP---SLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACS--I 275
                   SLY        +SKAY     RIGY    + L+++  + + Q T   C   +
Sbjct: 219 PGSGNHTISLYS-------LSKAYGFASWRIGYMVIPIHLLEA--IKKIQDTILICPPVV 269

Query: 276 AQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI-PDGAFY--LYPSCQD 332
           +Q+AA+ AL   + +   +       R + +  L  +     +   +GAFY  L  +   
Sbjct: 270 SQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTD- 328

Query: 333 LIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--HGPSIRISY-AVSDAILEEAC 389
                         D + V  L+   +VAV+ G++FG  +G  +RI+Y A+  A  +E  
Sbjct: 329 ------------LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGI 376

Query: 390 VRI 392
            R+
Sbjct: 377 ERL 379


>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
          Length = 397

 Score =  181 bits (463), Expect = 2e-46
 Identities = 93/305 (30%), Positives = 165/305 (54%), Gaps = 17/305 (5%)

Query: 29  KGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLH 88
           +GI V  L  G+PD   PE V +  ++  +     Y+   GI  LREA  + +++   + 
Sbjct: 28  RGIKVYHLNIGQPDIKTPE-VFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKK-WGID 85

Query: 89  YTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDD 148
              D+I++  G    I  A+MA  + GDE+L+P P++ +Y       G   V V T+ ++
Sbjct: 86  VEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEE 145

Query: 149 NFQV-SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY 207
            F + S E++E+ ITPKTK + +++P NP+GVVY++  L  LA+ + +   + +ISD++Y
Sbjct: 146 GFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAE-IAKKHDLFLISDEVY 204

Query: 208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI---KSMI-- 262
              VY   ++++ +++E  L +R ++++ VSK Y+  G RIG       LI   K +I  
Sbjct: 205 REFVYDGLKYTSALSLE-GLEDRVIIIDSVSKRYSACGARIG------CLISKNKELIAA 257

Query: 263 VLQGQQTSGACS-IAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD 321
            ++  Q   +   + Q  A   L+ P+ +    R+ ++ RRD+   +L  +PG+    P 
Sbjct: 258 AMKLCQARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPK 317

Query: 322 GAFYL 326
           GAFY+
Sbjct: 318 GAFYI 322


>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated.
          Length = 388

 Score =  180 bits (458), Expect = 7e-46
 Identities = 130/404 (32%), Positives = 197/404 (48%), Gaps = 32/404 (7%)

Query: 4   ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK 63
           ++  +  ++P   +  A+  + L   G D++ +  GEPDF  PE V  A  RA+ RG T+
Sbjct: 3   LAARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQ 62

Query: 64  YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRP 123
           YT+  G++PLREAI   + R   L    ++I+V  GA   +  A +A V  GDEVL+P P
Sbjct: 63  YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP 122

Query: 124 YWVSYP---DMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180
              SYP     VA   G PV V +   + FQ++   +E A   +T+ + L SPSNP+G  
Sbjct: 123 ---SYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTS 179

Query: 181 YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA 240
            + + LR + +  VR      I D+IY+ + Y     S +     SL +  + +N  SK 
Sbjct: 180 IAPDELRRIVEA-VRARGGFTIVDEIYQGLSYDAAPVSAL-----SLGDDVITINSFSKY 233

Query: 241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVV--NNRKIF 298
           + MTG R+G+     +L+ +   L       A ++AQ AA+ A   P    +    R  F
Sbjct: 234 FNMTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAAL-ACFEPDTLAIYERRRAEF 292

Query: 299 EYRRDLCVAQLQG----VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL 354
           + RRD  V  L+     VP    ++PDGAFY+Y  C+ +    +               +
Sbjct: 293 KRRRDFIVPALESLGFKVP----VMPDGAFYVYADCRGVAHPAAGDSA------ALTQAM 342

Query: 355 LEIEKVAVVQGSSFG-HGPS--IRISYAVSDAILEEACVRIKRF 395
           L    V +V G  FG H P   IR+SYA S + LEEA  R+ + 
Sbjct: 343 LHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKL 386


>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
          Length = 387

 Score =  176 bits (449), Expect = 8e-45
 Identities = 111/401 (27%), Positives = 173/401 (43%), Gaps = 30/401 (7%)

Query: 3   FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET 62
             S   R ++P   +    R  +L + G DV+ L  GEPDF   E +  A   A+  G T
Sbjct: 4   GYSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHT 63

Query: 63  KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPR 122
           +YTA  G+  LREAI   + +   +    ++I+V  G    +  A    V+ G   L+  
Sbjct: 64  RYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLAD 123

Query: 123 PYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYS 182
           P +      + L  G    V    D  +Q++P  +E+     T    + SP+NP+G + S
Sbjct: 124 PGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLS 183

Query: 183 QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA 242
           ++ L AL+   +R    H++ D+IY  + Y     ++++ V+   +    V+N  SK + 
Sbjct: 184 RDELAALSQA-LRARGGHLVVDEIYHGLTY-GVDAASVLEVDDDAF----VLNSFSKYFG 237

Query: 243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVV--NNRKIFEY 300
           MTG R+G+     + +  +  L       A + AQ AA+     P+   +    R  F  
Sbjct: 238 MTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFE-PETLAILEARRAEFAR 296

Query: 301 RRDLCVAQLQ----GVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLE 356
           RRD  +  L+    G+     + P GAFYLY             GD       F    LE
Sbjct: 297 RRDFLLPALRELGFGIA----VEPQGAFYLYADISAF------GGDAFA----FCRHFLE 342

Query: 357 IEKVAVVQGSSFGH---GPSIRISYAVSDAILEEACVRIKR 394
            E VA   G  FG    G  +R +Y  S   L+EA  RI R
Sbjct: 343 TEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIAR 383


>gnl|CDD|181114 PRK07777, PRK07777, aminotransferase; Validated.
          Length = 387

 Score =  173 bits (440), Expect = 8e-44
 Identities = 115/395 (29%), Positives = 181/395 (45%), Gaps = 25/395 (6%)

Query: 9   RRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVA 68
            R++P  T + A+      +     + L  G PD D P  +  A   A+  G  +Y    
Sbjct: 4   SRLRPFGTTIFAEMSA--LAVRTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGP 61

Query: 69  GISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVS 127
           GI  LR AI  + RR   L Y  D +++V  GA   I  A++  V  GDEVL+  PY+ S
Sbjct: 62  GIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDS 121

Query: 128 YPDMVALCGGIPVFVDTQQDDN-FQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRL 186
           Y  ++A+ G   V V    D   F +  + L  A+TP+T+ L +NSP NP+G V +   L
Sbjct: 122 YAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAEL 181

Query: 187 RALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL 246
            A+A+ L     + +I+D++YEH+V+   +   +  + P + ERT+ ++  +K + +TG 
Sbjct: 182 AAIAE-LAVEHDLLVITDEVYEHLVFDGARHLPLATL-PGMRERTVTISSAAKTFNVTGW 239

Query: 247 RIGYAAGALSLIKSMIVLQGQQ--TSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDL 304
           +IG+A G   LI +  V   +Q  T    +  Q A   AL+    +V   R   + +RD 
Sbjct: 240 KIGWACGPAPLIAA--VRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDR 297

Query: 305 CVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQ 364
             A L    G       G ++L   C D      P G       +F   L E   VA + 
Sbjct: 298 LAAGLAEA-GFEVHDSAGTYFL---CADP----RPLGY--DDGTEFCRALPERVGVAAIP 347

Query: 365 GSSF----GHG-PSIRISYAVSDAILEEACVRIKR 394
            S F          +R ++   D  L+EA  R++ 
Sbjct: 348 MSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRA 382


>gnl|CDD|163315 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase.  This
           clade of the pfam00155 superfamily of aminotransferases
           includes several which are adjacent to elements of the
           lysine biosynthesis via diaminopimelate pathway
           (GenProp0125). Every member of this clade is from a
           genome which possesses most of the lysine biosynthesis
           pathway but lacks any of the known aminotransferases,
           succinylases, desuccinylases, acetylases or deacetylases
           typical of the acylated versions of this pathway nor do
           they have the direct, NADPH-dependent enzyme (ddh).
           Although there is no experimental characterization of
           any of the sequences in this clade, a direct pathway is
           known in plants and Chlamydia, so it seems quite
           reasonable that these enzymes catalyze the same
           transformation.
          Length = 383

 Score =  172 bits (437), Expect = 2e-43
 Identities = 114/379 (30%), Positives = 188/379 (49%), Gaps = 18/379 (4%)

Query: 21  QRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVE 79
           ++  + +++G+DV+ L  G+PD   P+++  A+ +A E  E  +Y +  G+   R+A+ +
Sbjct: 19  KKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVAD 78

Query: 80  KFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGI 138
            ++R   +    + +++   G+K  I +  +A VN GD VL+P P +  Y       GG 
Sbjct: 79  WYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGE 138

Query: 139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH 198
           P  +  ++++ F    + + + I  K K +F+N P+NP+G V      + L +   +  +
Sbjct: 139 PYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVE-FAKEYN 197

Query: 199 VHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI 258
           + +  D+ Y  I +   +  + + V     +  +  + +SK Y MTG RIG A G   LI
Sbjct: 198 IIVCHDNAYSEITFDGYKAPSFLEV-DGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLI 256

Query: 259 KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318
             +  ++    SG     Q+AA+ ALNGPQD V   RKI++ RRDL +  L+ + GI   
Sbjct: 257 AGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-GIDVE 315

Query: 319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRI 376
            P   FY++           P G    T  +F   LLE   V V  G  FG +G   IRI
Sbjct: 316 KPKATFYVW--------VPVPEG---YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRI 364

Query: 377 SYAVSDAILEEACVRIKRF 395
           S  V D  LEEA  RIK+ 
Sbjct: 365 SLTVPDERLEEAVARIKKL 383


>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
          Length = 386

 Score =  167 bits (425), Expect = 5e-42
 Identities = 114/375 (30%), Positives = 176/375 (46%), Gaps = 40/375 (10%)

Query: 36  LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QI 94
           L+ G PDFD P  +  A+  AM  G  +Y  + G++ LREAI  K  R     Y +D +I
Sbjct: 35  LSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEI 94

Query: 95  IVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSP 154
            V  GA   +F A++A V  GDEV++  P + SY   + L GG  V V   Q  +F+V  
Sbjct: 95  TVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRV-ALQPPDFRVDW 153

Query: 155 EKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN 214
           ++   AI+P+T+ + LN+P NPSG V+S   +RAL   L+    ++++SD++YEHIV+  
Sbjct: 154 QRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQ-LIAGTDIYVLSDEVYEHIVFDG 212

Query: 215 CQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG--ALS--LIKSMIVLQGQQTS 270
              ++ V   P L ER  VV+   K Y +TG ++GY     ALS    K   V Q    +
Sbjct: 213 AGHAS-VLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRK---VHQYNTFT 268

Query: 271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG-------VPGIRYMIPDGA 323
              + AQ A  + L    +  +     ++ +RD   A L           G  + + D  
Sbjct: 269 V-NTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVD-- 325

Query: 324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS----IRISYA 379
              Y +  DL             D++F   L     VA +  S F   P     +R+ +A
Sbjct: 326 ---YSAISDL------------DDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA 370

Query: 380 VSDAILEEACVRIKR 394
             +  L+ A  R+ +
Sbjct: 371 KQEETLDAAAERLCQ 385


>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional.
          Length = 384

 Score =  164 bits (417), Expect = 3e-41
 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 19/369 (5%)

Query: 32  DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTS 91
           D L L+ G P+F     +   V RAM  G  +Y  +AGI+ LREA+ EK  R     Y  
Sbjct: 30  DALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDP 89

Query: 92  D-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF 150
             ++ V   A   ++ A+ A V+ GDEV+   P + SY  +V L G  PV +    +D F
Sbjct: 90  ASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPED-F 148

Query: 151 QVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHI 210
           +V+ +++  AITP+T+ + +N+P NPS  V+S   L  LA  L RN  + I+SD++YEH+
Sbjct: 149 RVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLA-QLTRNTDIVILSDEVYEHV 207

Query: 211 VYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS 270
           V+   +  ++      L ER+++V+   K+Y +TG R+GY      L+  +  +      
Sbjct: 208 VFDGARHHSMAR-HRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVF 266

Query: 271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSC 330
            A +  Q A  EAL  P  + +     ++ +RDL   +L G            F L PS 
Sbjct: 267 SADTPMQHAFAEALAEPASY-LGLGAFYQRKRDLLARELAGSR----------FELLPSE 315

Query: 331 QDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF----GHGPSIRISYAVSDAILE 386
                          +D DFV  L+   +VA +  S+F         IR+S++  DA L 
Sbjct: 316 GSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLV 375

Query: 387 EACVRIKRF 395
           E   R+   
Sbjct: 376 EGARRLCSL 384


>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated.
          Length = 404

 Score =  163 bits (414), Expect = 1e-40
 Identities = 118/394 (29%), Positives = 189/394 (47%), Gaps = 35/394 (8%)

Query: 20  AQRVRDLRSKGIDVLCLTAGEP---DFDMPENVKYAVVRAMERGETKYTAVAGISPLREA 76
            +  + L  +G  +L L  G P    F+ P+ +   V+R +   +  Y+   G+   R+A
Sbjct: 22  LKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQ-GYSDSKGLFSARKA 80

Query: 77  IVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYP---DMVA 133
           I++ +++        D I +G G   +I  A+ A +N GDEVL+P P    YP     V+
Sbjct: 81  IMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAP---DYPLWTAAVS 137

Query: 134 LCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVL 193
           L GG PV     ++  +    + +   ITP+TK + + +P+NP+G VYS+  L  + ++ 
Sbjct: 138 LSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIA 197

Query: 194 VRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA- 252
            ++ ++ I +D+IY+ I+Y      +I ++ P L    +  NG+SKAY + G R+G+   
Sbjct: 198 RQH-NLIIFADEIYDKILYDGAVHISIASLAPDLL--CVTFNGLSKAYRVAGFRVGWMVL 254

Query: 253 -GALSLIKSMIVLQGQQTSGA---CS--IAQWAAVEALNGPQ---DFVVNNRKIFEYRRD 303
            G     K  I  +G     +   C+   AQ A   AL G Q   + ++   +++E +RD
Sbjct: 255 SGPKKHAKGYI--EGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYE-QRD 311

Query: 304 LCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV 363
                L  +PG+  + P GA Y +P    L  K  P    I  D  FV  LL  EKV +V
Sbjct: 312 RAWELLNAIPGVSCVKPKGALYAFPK---LDPKVYP----IHDDEQFVLDLLLQEKVLLV 364

Query: 364 QGSSFG--HGPSIRISYAVSDAILEEACVRIKRF 395
           QG+ F        RI        LEEA  RI RF
Sbjct: 365 QGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRF 398


>gnl|CDD|130332 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine
           aminotransferases.  This subfamily of pyridoxal
           phosphate-dependent enzymes includes known examples of
           both tyrosine aminotransferase from animals and
           nicotianamine aminotransferase from barley.
          Length = 403

 Score =  159 bits (404), Expect = 1e-39
 Identities = 109/416 (26%), Positives = 187/416 (44%), Gaps = 47/416 (11%)

Query: 10  RVQPSA-TLVAAQRVRDLRSKGID-------VLCLTAGEP----DFDMPENVKYAVVRAM 57
             + S         +R +             ++ L+ G+P    +       + AV  A+
Sbjct: 2   NFKGSDHAKKTVNPIRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDAL 61

Query: 58  ERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGD 116
             G+   Y    G    REA+ E    D     T+D +++ +G    I   + A  N G 
Sbjct: 62  RSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGA 121

Query: 117 EVLIPRPYWVSYPDMVALCG--GIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSP 173
            +L+PRP    +P         G+ V   D   + ++++  + LE     KT  + + +P
Sbjct: 122 NILVPRP---GFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINP 178

Query: 174 SNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF------SNIVNVEPSL 227
           SNP G V+S++ L+ +A+V  R   + II+D+IY H+V+ +  F      ++IV V    
Sbjct: 179 SNPCGSVFSRDHLQKIAEV-ARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPV---- 233

Query: 228 YERTLVVNGVSKAYAMTGLRIGYAA-----GAL-SLIKSMIVLQGQQTSGACSIAQWAAV 281
               L + G+SK + + G R+G+       G     +   +    Q+  G  +I Q A  
Sbjct: 234 ----LSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALP 289

Query: 282 EAL-NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPS 340
           + L N PQ+F      + +   +LC  +L+ +PG+    P+GA YL      ++  +   
Sbjct: 290 DILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYL------MVKLELEL 343

Query: 341 GDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFC 396
              I+ D+DF   L+  E V  + GS+FG    +RI+  V +++LEEAC RIK FC
Sbjct: 344 FPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFC 399


>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase;
           Provisional.
          Length = 385

 Score =  157 bits (400), Expect = 4e-39
 Identities = 112/379 (29%), Positives = 185/379 (48%), Gaps = 20/379 (5%)

Query: 21  QRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVE 79
           ++  +  ++G+DV+ L  G+PD   P+++  A+ +A+E  E  +Y +  G+   R+A+ +
Sbjct: 21  KKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVAD 80

Query: 80  --KFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGG 137
             K R   +L     ++I   G+K  I +  +A VN GD VL+P P +  Y       GG
Sbjct: 81  WYKRRFGVELD-PETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGG 139

Query: 138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNP 197
            P F+  ++++ F    + + + +  K K +F+N P+NP+G V        + D   +  
Sbjct: 140 EPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKY- 198

Query: 198 HVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL 257
            + +  D  Y  I Y   +  + + V P   +  +  + +SK Y MTG RIG+A G   L
Sbjct: 199 DIIVCHDAAYSEIAYDGYKPPSFLEV-PGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADL 257

Query: 258 IKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY 317
           I  +  ++    SG     Q A + ALNGPQ+ V   RKI++ RRD+ V  L+ + G+  
Sbjct: 258 IAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-GLEV 316

Query: 318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IR 375
             P   FY++           P G    T  +F   LL+   V V  G+ FG +G    R
Sbjct: 317 EPPKATFYVW--------APVPKG---YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFR 365

Query: 376 ISYAVSDAILEEACVRIKR 394
           I+  V D  +EEA  RIK+
Sbjct: 366 IALTVPDERIEEAVERIKK 384


>gnl|CDD|130331 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
           This model describes tyrosine aminotransferase as found
           in animals and Trypanosoma cruzi. It is the first enzyme
           of a pathway of tyrosine degradation via homogentisate.
           Several plant enzyme designated as probable tyrosine
           aminotransferases are very closely related to an
           experimentally demonstrated nicotianamine
           aminotransferase, an enzyme in a siderophore (iron
           uptake chelator) biosynthesis pathway. These plant
           sequences are excluded from the model seed and score
           between the trusted an noise cutoffs.
          Length = 401

 Score =  154 bits (390), Expect = 4e-38
 Identities = 101/379 (26%), Positives = 176/379 (46%), Gaps = 29/379 (7%)

Query: 33  VLCLTAGEPDFD----MPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRR-DND 86
           ++ L+ G+P           V  A+  +++ G+   Y    G    REAI   +   D  
Sbjct: 33  MIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGP 92

Query: 87  LHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFV---D 143
           +   +D +++ +G  H I   + A  N G  +L+PRP    +P    L   + + V   +
Sbjct: 93  I--EADDVVLCSGCSHAIEMCIAALANAGQNILVPRP---GFPLYETLAESMGIEVKLYN 147

Query: 144 TQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIIS 203
              D ++++  ++LE  I  KT  L +N+PSNP G V+S+  L  +  V  R   + II+
Sbjct: 148 LLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQ-CLPIIA 206

Query: 204 DDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA-----GALSLI 258
           D+IY  +V+    F  + ++  ++    L   G++K + + G R+G+       G L  I
Sbjct: 207 DEIYGDMVFSGATFEPLASLSSTV--PILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDI 264

Query: 259 KSMIVLQGQQTSGACSIAQWAAVEAL-NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY 317
           +  +V   Q+  G C+I Q A    L   PQ++      + E    LC   L  VPG+R 
Sbjct: 265 RDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRP 324

Query: 318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS 377
           ++P GA Y+      ++G +       + D++F   L+  + V  + GS F +    R+ 
Sbjct: 325 VMPSGAMYM------MVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVV 378

Query: 378 YAVSDAILEEACVRIKRFC 396
             V   ++EEAC RI+ FC
Sbjct: 379 LTVPVVMMEEACSRIQEFC 397


>gnl|CDD|177770 PLN00175, PLN00175, aminotransferase family protein; Provisional.
          Length = 413

 Score =  154 bits (390), Expect = 5e-38
 Identities = 97/364 (26%), Positives = 179/364 (49%), Gaps = 20/364 (5%)

Query: 36  LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QI 94
           L  G P+FD P+ VK A ++A+  G+ +Y    G+  L  AI E+F++D  L    + ++
Sbjct: 59  LGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEV 118

Query: 95  IVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSP 154
            V +G    I   ++  +N GDEV++  P++ SY   +++ G     V T +  +F V  
Sbjct: 119 TVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTV-TLRPPDFAVPE 177

Query: 155 EKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN 214
           ++L+ A T KT+ + +N+P NP+G ++++  L  +A +   N  V   +D++Y+ + +  
Sbjct: 178 DELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAFEG 236

Query: 215 CQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACS 274
              S  +   P +YERT+ +N + K +++TG +IG+A     L   +       T    +
Sbjct: 237 DHIS--MASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATAT 294

Query: 275 IAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLI 334
             QWAAV AL  P+ +    ++ +  ++D+ V  L+ V G +     G ++       ++
Sbjct: 295 PMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYF-------VM 346

Query: 335 GKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS-----IRISYAVSDAILEEAC 389
              +P G     D+ F   L+E   VA +  S F   P      +R ++   +  L  A 
Sbjct: 347 VDHTPFG--FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAV 404

Query: 390 VRIK 393
            R+K
Sbjct: 405 ERMK 408


>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional.
          Length = 387

 Score =  147 bits (374), Expect = 4e-36
 Identities = 101/373 (27%), Positives = 177/373 (47%), Gaps = 25/373 (6%)

Query: 36  LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD--- 92
           L  G PD   PE+V+ A   A+  G  +Y  + G+  LR+A+   + R   L    D   
Sbjct: 31  LGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGL--DLDPET 88

Query: 93  QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQV 152
           +++V +GA   +  AL+A V  GDEV++ +P + +Y  ++   GG+P  V  +    +++
Sbjct: 89  EVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPH-WRL 147

Query: 153 SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVY 212
               L  A +P+TK + LN+P NP+G V+ +  L  LA+   R+     I D+++EH+V+
Sbjct: 148 PRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRH-DAVAICDEVWEHVVF 206

Query: 213 RNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQ--TS 270
              +   ++ + P + ERT+ +    K +++TG ++G+   A  L++  ++ +  Q  T 
Sbjct: 207 DGRRHIPLMTL-PGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLR--VLAKAHQFLTF 263

Query: 271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSC 330
                 Q A    L  P D+    R      RD   A L+ + G   +   G ++L    
Sbjct: 264 TTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFL---T 319

Query: 331 QDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--GHGPS--IRISYAVSDAILE 386
            DL    +P G +   D+ F   L+E   VA +  S+F      +  +R  +A  DA L+
Sbjct: 320 VDL----APLG-LAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLD 374

Query: 387 EACVRIKRFCHSL 399
           EA  R+       
Sbjct: 375 EAVERLAAARRRR 387


>gnl|CDD|183994 PRK13355, PRK13355, bifunctional HTH-domain containing
           protein/aminotransferase; Provisional.
          Length = 517

 Score =  141 bits (358), Expect = 3e-34
 Identities = 108/382 (28%), Positives = 178/382 (46%), Gaps = 31/382 (8%)

Query: 30  GIDVLCLTAGEP---DFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDND 86
           G  +L L  G P    F  P+ V Y + + +   E  Y+   G+   R+AI++  +    
Sbjct: 145 GTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTE-GYSDSKGLFSARKAIMQYAQLKGL 203

Query: 87  LHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQ 146
            +   D I  G G   +I  ++ A ++ GDEVLIP P +  +   V L GG  V     +
Sbjct: 204 PNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDE 263

Query: 147 DDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI 206
              +    + +   IT +TK + + +P+NP+G +Y +  L+ + D + R   + I SD+I
Sbjct: 264 QSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVD-IAREHQLIIFSDEI 322

Query: 207 YEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA--AGALSLIKSMIV- 263
           Y+ +V    + ++I ++ P L+   +  +G+SK++ + G RIG+   +G   + K  I  
Sbjct: 323 YDRLVMDGLEHTSIASLAPDLF--CVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEG 380

Query: 264 LQGQQTSGACS--IAQWAAVEALNGPQ---DFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318
           L        CS   AQ     AL G Q   D++V   +++E +R+L    L  +PGI  +
Sbjct: 381 LNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYE-QRELVYNALNAIPGISAV 439

Query: 319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF-----GHGPS 373
            P  AFY++P       K       I  D  F   LL  +KV +VQG+ F      H   
Sbjct: 440 KPKAAFYIFP-------KIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDH--- 489

Query: 374 IRISYAVSDAILEEACVRIKRF 395
            R+ Y      LE+A  R+  F
Sbjct: 490 FRVVYLPRLEDLEDAMDRLADF 511


>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional.
          Length = 399

 Score =  128 bits (322), Expect = 4e-30
 Identities = 86/376 (22%), Positives = 171/376 (45%), Gaps = 20/376 (5%)

Query: 21  QRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK 80
           +       K ID   L+ G PD    + V+  +V    + E+    ++GI    EA+ E 
Sbjct: 25  KEKIAAGHKMID---LSIGNPDMPPADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEY 81

Query: 81  FRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIP 139
           +   +++   +D ++++  G++  + +  M   N GD +L+P P + +Y   + + G   
Sbjct: 82  YNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATS 141

Query: 140 VFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHV 199
            ++  +++++F    E + + I  K K + LN P NP   +  ++  + +     ++ ++
Sbjct: 142 YYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKH-NI 200

Query: 200 HIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIK 259
            ++ D  Y    +   +  + ++V P   E  + +N +SK+Y++ G RIGY  G   +++
Sbjct: 201 IVVHDFAYAEFYFDGNKPISFLSV-PGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVR 259

Query: 260 SMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI 319
           ++   +     G     Q AA  AL     F   NR I++ RRD  V   +   G     
Sbjct: 260 ALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-GWNVDK 318

Query: 320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRIS 377
           P G+ +++         + P G    T L F   L++   V V  G +FG HG   +RI+
Sbjct: 319 PAGSMFVW--------AEIPKG---WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIA 367

Query: 378 YAVSDAILEEACVRIK 393
               + +L++A   I+
Sbjct: 368 LVQDEEVLQQAVENIR 383


>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional.
          Length = 412

 Score =  124 bits (314), Expect = 3e-29
 Identities = 90/381 (23%), Positives = 165/381 (43%), Gaps = 28/381 (7%)

Query: 34  LCLTAGEPDFD----MPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRD---- 84
           + L+ G+P  D     P     A+V A++  E   Y    G    REA+   +R      
Sbjct: 36  IKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHK 95

Query: 85  --NDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFV 142
                    D +++ +G  H I  AL A  + GD +L+P P +  Y  +    G    F 
Sbjct: 96  ESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFY 155

Query: 143 DTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHII 202
           + + + +++   +++ + +  +TK L + +PSNP G  +S+  +  +  +      + +I
Sbjct: 156 NCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRL-CEELRLPLI 214

Query: 203 SDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA------AGALS 256
           SD+IY  +V+    F+++ + + ++    +++ G +K   + G R+G+            
Sbjct: 215 SDEIYAGMVFNGATFTSVADFDTTV--PRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGD 272

Query: 257 LIKSMIVLQGQQTSGACSIAQWAAVEAL-NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGI 315
            +  M  L G    G CS+ Q A  EAL N PQ+ +       E    +    +    G+
Sbjct: 273 FLDGMKRL-GMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGL 331

Query: 316 RYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIR 375
              +P G+ +L      +          I++D++F   LLE E V V+ G  F      R
Sbjct: 332 SPTMPRGSMFL------MSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTR 385

Query: 376 ISYAVSDAILEEACVRIKRFC 396
           ++ +    +L EA  RIK FC
Sbjct: 386 LTISRPVEVLREAVERIKAFC 406


>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed.
          Length = 389

 Score =  117 bits (295), Expect = 5e-27
 Identities = 114/418 (27%), Positives = 187/418 (44%), Gaps = 57/418 (13%)

Query: 1   MVF-ISNILRRV--QPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAM 57
           M F  S +L+++  Q  A+LV   +V    ++G DV+ L  G PD   PE++  A+  A 
Sbjct: 1   MEFEPSELLKQLPKQFFASLV--AKVNKKVAEGHDVINLGQGNPDQPTPEHIVEALQEAA 58

Query: 58  ERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMG 115
           E     KY+   G   L+EA  + ++R+  +    + ++ +  G K  +       +N G
Sbjct: 59  ENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPG 118

Query: 116 DEVLIPRPYWVSYPDM---VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNS 172
           D +L+P P    YPD    VAL       +    ++NF     K+ + +  K K ++LN 
Sbjct: 119 DTILVPDP---GYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNY 175

Query: 173 PSNPSGVVYSQ---NRLRALADVLVRNPHVHIISDDIYEHIVY---RNCQF-----SNIV 221
           P+NP+G V ++       A A    +  ++ ++ D  Y  I +   +   F     +  V
Sbjct: 176 PNNPTGAVATKAFFEETVAFA----KKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDV 231

Query: 222 NVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSI---AQW 278
            +E  LY  TL     SK + M G R+ +A G  S+I+++ +LQ        S+    Q 
Sbjct: 232 GIE--LY--TL-----SKTFNMAGWRVAFAVGNESVIEAINLLQDHLF---VSLFGAIQD 279

Query: 279 AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKS 338
           AA+EAL   Q  V      +E RR+  ++  + + G     P G+F+ +           
Sbjct: 280 AAIEALLSDQSCVAELVARYESRRNAFISACREI-GWEVDAPKGSFFAW--------MPV 330

Query: 339 PSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRISYAVSDAILEEACVRIKR 394
           P G    T   F + LLE   VAV  G+ FG HG   +R+     +  L EA  RI +
Sbjct: 331 PKG---YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGK 385


>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated.
          Length = 395

 Score =  114 bits (288), Expect = 3e-26
 Identities = 97/358 (27%), Positives = 162/358 (45%), Gaps = 37/358 (10%)

Query: 27  RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDN 85
           R +G D++  + G PD   P ++   +    +R +T  Y+   GI  LR AI   ++   
Sbjct: 25  RRRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRY 84

Query: 86  DLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGG----IPV 140
           D+    + + IV  G+K  + + ++AT++ GD VL+P P +  +     + G     +P+
Sbjct: 85  DVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPL 144

Query: 141 FVDTQQDDNFQVSPEKLEQAIT---PKTKWLFLNSPSNPSG--VVYSQ-NRLRALADVLV 194
                  D F     +LE+AI    PK K + L  PSNP+   V      ++ ALA    
Sbjct: 145 VEGV---DFF----NELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALA---- 193

Query: 195 RNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA 254
           +   V ++ D  Y  IVY   +  +I+ V P   +  +    +SK+Y M G RIG+  G 
Sbjct: 194 KRYDVLVVHDLAYADIVYDGWKAPSIMQV-PGAKDVAVEFFTLSKSYNMAGWRIGFMVGN 252

Query: 255 LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPG 314
             L+ ++  ++     G  +  Q AA+ AL G Q  V +  + ++ RRD+ V   +G+  
Sbjct: 253 PELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLV---KGLHE 309

Query: 315 IRYMI--PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH 370
             +M+  P  + Y++         K P        L+F   LL   KV V  G  FG 
Sbjct: 310 AGWMVEMPKASMYVW--------AKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGD 359


>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase.  Note: the
           detailed information included in the EC:2.6.1.17 record
           includes the assertions that the enzyme uses the
           pyridoxal pyrophosphate cofactor, which is consistent
           with the pfam00155 family, and the assertion that the
           amino group donor is L-glutamate, which is undetermined
           for the sequences in this clade.
          Length = 350

 Score =  113 bits (285), Expect = 6e-26
 Identities = 100/363 (27%), Positives = 166/363 (45%), Gaps = 26/363 (7%)

Query: 38  AGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QIIV 96
            G+P    P  ++ A++ A+    ++Y +  G   LREAI   F R   +    D Q++ 
Sbjct: 7   TGDPKEPTPPFIRKALIDAVPE-VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP 65

Query: 97  GTGAKHVIFNALMATVNMGDE---VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVS 153
             G+K  IF+  +  ++  ++   V+   P +  Y       GG P  V  +++D F + 
Sbjct: 66  SAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLR 125

Query: 154 PEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYR 213
            EK+E++I  +TK +++N P NP+G    ++ L+     + R   + + SD+ Y  I + 
Sbjct: 126 LEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIA-MCREHGIILCSDECYTEIYFG 184

Query: 214 NCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGAC 273
               S +   E  + E  L  + +SK   MTG R G+ AG   LI  +  L+      + 
Sbjct: 185 EPPHSAL---EVGI-ENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASP 240

Query: 274 SIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDL 333
              Q AA  A +   + V+  RKIF+ +RDL +     V G+ Y+ PD  FYL+      
Sbjct: 241 DFVQAAAKAAWSD-DNHVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATFYLW------ 292

Query: 334 IGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS--IRISYAVSDAILEEACVR 391
              K PSG       D+   LLE   + V  G +FG G    +R++   +    EEA   
Sbjct: 293 --VKVPSG---IDAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRL 346

Query: 392 IKR 394
            +R
Sbjct: 347 WER 349


>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated.
          Length = 405

 Score =  108 bits (273), Expect = 2e-24
 Identities = 104/377 (27%), Positives = 167/377 (44%), Gaps = 21/377 (5%)

Query: 26  LRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRD 84
            R+ G D++ L  G PD   P+++   +    +   T +Y+A  GI  LR A    + R 
Sbjct: 25  ARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARR 84

Query: 85  NDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV---ALCGGIPV 140
             +    D Q++   G+K    N   A    GD +L P P   SYP       + GG+  
Sbjct: 85  FGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNP---SYPIHAFGFIMAGGVIR 141

Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVH 200
            V  + D+ F  + E+  +   PK   L +N PSNP+  V   +  + +     +   + 
Sbjct: 142 SVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVA-FAKKHDII 200

Query: 201 IISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKS 260
           I+SD  Y  I +      +++ V P   + T+    +SK ++M G R+G+A G   LI +
Sbjct: 201 ILSDLAYSEIYFDGNPPPSVLQV-PGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAA 259

Query: 261 MIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP 320
           +  ++     GA +  Q AA  ALNGPQD +   R++++ RRD+ V          + IP
Sbjct: 260 LTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAG---WDIP 316

Query: 321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRISY 378
                  P+         P        L+F   L+E   VAV  G  FG HG   +RI+ 
Sbjct: 317 P------PAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIAL 370

Query: 379 AVSDAILEEACVRIKRF 395
             ++  + +A   IKRF
Sbjct: 371 VENEQRIRQAARNIKRF 387


>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional.
          Length = 386

 Score =  105 bits (265), Expect = 2e-23
 Identities = 87/344 (25%), Positives = 151/344 (43%), Gaps = 30/344 (8%)

Query: 62  TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIP 121
             Y  V G+  LREA    + R      + +Q+ + +G     + A++     GDEV++P
Sbjct: 61  HLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILP 120

Query: 122 RPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVY 181
            P++ ++   + + G  PV++   +       P   E  ITP+T+ + L +P+NP+GVVY
Sbjct: 121 LPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVY 180

Query: 182 SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ----FSNIVNVEPSLYERTLV-VNG 236
               L  L D+  R+  + +I D+ Y             F+     +P  ++ TLV +  
Sbjct: 181 PPELLHELYDLARRH-GIALILDETYRDFDSGGGAPHDLFA-----DPD-WDDTLVHLYS 233

Query: 237 VSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACS--IAQWAAVEALNGPQDFVVNN 294
            SK+YA+TG R+G    + + I    + +   T   C+  I Q A    L    D+   N
Sbjct: 234 FSKSYALTGHRVGAVVASPARIAE--IEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGN 291

Query: 295 RKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL 354
           R     RRD   A    +PG   ++  GA++ Y         + P  D  R   +    L
Sbjct: 292 RAEIARRRDAFRAVFARLPGWE-LLASGAYFAY--------VRHPFPD--RPSREVARRL 340

Query: 355 LEIEKVAVVQGSSFGHG--PSIRISYA-VSDAILEEACVRIKRF 395
            +   +  + G+ FG G    +R+++A    A + E   R++ F
Sbjct: 341 AKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384


>gnl|CDD|181511 PRK08636, PRK08636, aspartate aminotransferase; Provisional.
          Length = 403

 Score =  105 bits (264), Expect = 2e-23
 Identities = 103/399 (25%), Positives = 180/399 (45%), Gaps = 50/399 (12%)

Query: 27  RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRDN 85
           R  G D++  + G PD   P+++   +  + ++ +T  Y+   GI  LR AI   ++R  
Sbjct: 29  RRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKY 88

Query: 86  DLHYTSDQIIVGT-GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDT 144
           ++    +  +V T G+K    + + A  N GD  ++P P +  +     L GG    +  
Sbjct: 89  NVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPL 148

Query: 145 QQDDNFQVSPEK----LEQAI---TPKTKWLFLNSPSNPSGVVYSQN---RLRALADVLV 194
           + +++F++  ++    LE+A+   +PK K++ +N P NP+     ++   RL ALA    
Sbjct: 149 EYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALA---- 204

Query: 195 RNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNG--VSKAYAMTGLRIGYAA 252
           +    +IISD  Y  I +   +  +I+ VE +   + + V    +SK+Y M G R+G+  
Sbjct: 205 KKERFYIISDIAYADITFDGYKTPSILEVEGA---KDVAVESYTLSKSYNMAGWRVGFVV 261

Query: 253 G------ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCV 306
           G      AL  IKS +        G  +  Q AA  AL+G Q  V   R+ +  RRD+ +
Sbjct: 262 GNKKLVGALKKIKSWL------DYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLI 315

Query: 307 AQLQGVPGIRYMIPDGAFYLY---PSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV 363
                  G     P  + +++   P     +G            L+F   LL   KVAV 
Sbjct: 316 ESFANA-GWELQKPRASMFVWAKIPEPARHLGS-----------LEFSKQLLTEAKVAVS 363

Query: 364 QGSSFGHGPS--IRISYAVSDAILEEACVRIKRFCHSLQ 400
            G  FG      +RI+   ++  + +A   IK+F   L+
Sbjct: 364 PGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLKELE 402


>gnl|CDD|163314 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase.  This
           family of succinyldiaminopimelate transaminases (DapC)
           includes the experimentally characterized enzyme from
           Bordatella pertussis. The majority of genes in this
           family are proximal to genes encoding components of the
           lysine biosynthesis via diaminopimelate pathway
           (GenProp0125).
          Length = 393

 Score =  104 bits (262), Expect = 4e-23
 Identities = 96/386 (24%), Positives = 160/386 (41%), Gaps = 38/386 (9%)

Query: 30  GIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHY 89
               + L+ GEP    P  V  A+   +  G + Y    G+  LR+AI     R  DL  
Sbjct: 27  SKPPIALSIGEPKHPTPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPT 85

Query: 90  TSD---QIIVGTGAKHVIFNALMATVNMGDE--VLIPRPYWVSYPDMVALCGGIPVFVDT 144
             D    ++   G +  +F    A +N G    V++P P++  Y     L G  P F++ 
Sbjct: 86  GVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNC 145

Query: 145 QQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD 204
             ++ F    + + +++  + + LF+ SP NP+G V S + L+ L ++  +   + I SD
Sbjct: 146 TAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFI-IASD 204

Query: 205 DIYEHIVYRNCQFSNIVNVEPSL------YERTLVVNGVSKAYAMTGLRIGYAAGALSLI 258
           + Y  + Y +        ++ +       + R LV + +SK   + GLR G+ AG   ++
Sbjct: 205 ECYSEL-YFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEIL 263

Query: 259 KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318
           K+ +  +      A  I    A  A    +  V  NR ++  +    +  L  V  +   
Sbjct: 264 KAFLRYRTYHGC-AMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQVLDLE-- 320

Query: 319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS-----SFGHGPS 373
           +PD  FYL+P        K P GD    D  F   L E E V V+ G      + G  P 
Sbjct: 321 LPDAGFYLWP--------KVP-GD----DEAFARALYEEENVTVLPGRFLAREAEGVNPG 367

Query: 374 ---IRISYAVSDAILEEACVRIKRFC 396
              +RI+         EA  RI+ F 
Sbjct: 368 EGRVRIALVAPLEECVEAAERIRSFI 393


>gnl|CDD|180469 PRK06207, PRK06207, aspartate aminotransferase; Provisional.
          Length = 405

 Score =  102 bits (257), Expect = 1e-22
 Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 32/346 (9%)

Query: 60  GETKYTAVAGISPLREAIVEKFRRDNDLHYT------SDQIIVGTGAKHVIFNALMATVN 113
           G   YT   G + +RE +  +        +T      +D++I+  G +  +F A+ ATV 
Sbjct: 70  GVQAYTEYRGDADIRELLAARLA-----AFTGAPVDAADELIITPGTQGALFLAVAATVA 124

Query: 114 MGDEVLIPRPYWVSYPDMVALCGG--IPVFVD-TQQDDNFQVSPEKLEQAITPKTKWLFL 170
            GD+V I +P + +   +V    G  +PV +D    D    +  ++LE+A     +    
Sbjct: 125 RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLF 184

Query: 171 NSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNI--VNVEPSLY 228
           ++P+NP+GVVYS   +  +A  L R     +I D +Y  ++Y    ++++  + ++P   
Sbjct: 185 SNPNNPAGVVYSAEEIAQIAA-LARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDP--- 240

Query: 229 ERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ 288
           E  + + G SK  +++G R+G A G+ ++I  M  LQ   +  A   +Q       + P 
Sbjct: 241 ENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD 300

Query: 289 DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDL 348
            ++ +     +  RD  +  L+GV G+    P    YL+P        + P   V  +  
Sbjct: 301 GWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFP--------RLPRLAV--SLH 350

Query: 349 DFVNGLLEIEKVAVVQGSSFG--HGPSIRISYAVSDAILEEACVRI 392
           DFV  L     V V  G+ F      SIR++++   A    A  RI
Sbjct: 351 DFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERI 396


>gnl|CDD|162223 TIGR01141, hisC, histidinol-phosphate aminotransferase.
           Histidinol-phosphate aminotransferase is a
           pyridoxal-phosphate dependent enzyme.
          Length = 346

 Score = 93.5 bits (233), Expect = 9e-20
 Identities = 81/316 (25%), Positives = 140/316 (44%), Gaps = 31/316 (9%)

Query: 21  QRVRDL------RSKGID-VLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPL 73
             +++L      R  G   V+ L + E  F  P   K A+    ++   +Y        L
Sbjct: 2   PDIKNLSPYQPARELGGKEVIKLNSNENPFGPPPKAKEALRAEADKL-HRYPDPDPAE-L 59

Query: 74  REAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA 133
           ++A+ + +  D +      QI++G G+  +I   + A +  GD VL+P P +  Y     
Sbjct: 60  KQALADYYGVDPE------QILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAK 113

Query: 134 LCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVL 193
           + G   V V    D++ Q+  E +  AI  K K +FL SP+NP+G + S++ + A+ +  
Sbjct: 114 IHGAEVVKVPL--DEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERT 171

Query: 194 VRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYER--TLVVNGVSKAYAMTGLRIGYA 251
             +  V +  D+ Y         FS   +  P L E    +V+  +SKA+ + GLRIGYA
Sbjct: 172 PEDALVVV--DEAYGE-------FSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYA 222

Query: 252 AGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG 311
                +I ++   + +       +AQ AA+ AL    DF+    +     R+     L+ 
Sbjct: 223 IANAEIIDAL--NKVRAPFNLSRLAQAAAIAALR-DDDFIEKTVEEINAERERLYDGLKK 279

Query: 312 VPGIRYMIPDGAFYLY 327
           +PG+     D  F L 
Sbjct: 280 LPGLEVYPSDANFVLI 295


>gnl|CDD|177749 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase;
           Provisional.
          Length = 430

 Score = 92.9 bits (231), Expect = 1e-19
 Identities = 95/397 (23%), Positives = 167/397 (42%), Gaps = 45/397 (11%)

Query: 25  DLRSKGIDVLCLTAGEPD----FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVE 79
           D       VL L  G+P     F      + AV  A+  G+   Y+   G+ P R AI E
Sbjct: 46  DAGGGPRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAE 105

Query: 80  KFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNM-GDEVLIPRPYWVSYPDMVALCGGI 138
              RD     ++D I +  G    I   +M+ +   G  +L+PRP +  Y       G  
Sbjct: 106 YLSRDLPYELSTDDIYLTAGCAQAI-EIIMSVLAQPGANILLPRPGYPLYEARAVFSGLE 164

Query: 139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH 198
               D   +  ++V  E +E      T  + + +P+NP G VYS   L  +A+   R   
Sbjct: 165 VRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAET-ARKLG 223

Query: 199 VHIISDDIYEHIVYRNCQF------SNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA 252
           + +I+D++Y+H+ + +  F        +  V        L +  +SK + + G R+G+ A
Sbjct: 224 ILVIADEVYDHLTFGSKPFVPMGVFGEVAPV--------LTLGSISKRWVVPGWRLGWIA 275

Query: 253 -----GALSLIKSMIVLQGQQ--TSGACSIAQWAAVEAL-NGPQDFVVNNRKIFEYRRDL 304
                G L   K +  ++     ++   +  Q A  + + N  ++F      + +   D+
Sbjct: 276 TCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADI 335

Query: 305 CVAQLQGVPGIRY-MIPDGAFY----LYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEK 359
           C  +++ +  I     P+G+ +    L  SC             I+ D+DF   L + E 
Sbjct: 336 CYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLS----------GIKDDMDFCCKLAKEES 385

Query: 360 VAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFC 396
           V V+ GS+ G    +RI++A+    LE+   R+K FC
Sbjct: 386 VVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSFC 422


>gnl|CDD|177839 PLN02187, PLN02187, rooty/superroot1.
          Length = 462

 Score = 92.1 bits (228), Expect = 2e-19
 Identities = 95/362 (26%), Positives = 162/362 (44%), Gaps = 33/362 (9%)

Query: 52  AVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA 110
           AVV  +  G+   Y   AGI P R A+ +   RD     T + I +  G    I     +
Sbjct: 91  AVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFES 150

Query: 111 TVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFL 170
                  +L+PRP +  Y    A  G      D   +  +++  E +E      T  + +
Sbjct: 151 LARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVV 210

Query: 171 NSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN------CQFSNIVNVE 224
            +P+NP G VYS + L+ +A+   R   + +ISD++Y+  ++ +       +F++IV V 
Sbjct: 211 INPNNPCGNVYSHDHLKKVAET-ARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPV- 268

Query: 225 PSLYERTLVVNGVSKAYAMTGLRIGYAA--GALSLIKSMIVLQGQQ-----TSGACSIAQ 277
                  L + G+SK + + G +IG+ A      + ++  VLQ  +     T    +I Q
Sbjct: 269 -------LTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQ 321

Query: 278 WAAVEAL--NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIG 335
            AA+ A+     ++F     KI ++  DL   +L+ +P +  + P        SC  L+ 
Sbjct: 322 -AALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCV--VCPKKP----ESCTYLLT 374

Query: 336 KKSPS-GDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKR 394
           K   S  D I+ D+DF   L   E +  + G + G    +RI+  V   +LE+A  R+K 
Sbjct: 375 KLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKG 434

Query: 395 FC 396
           FC
Sbjct: 435 FC 436


>gnl|CDD|181673 PRK09147, PRK09147, succinyldiaminopimelate transaminase;
           Provisional.
          Length = 396

 Score = 92.2 bits (230), Expect = 2e-19
 Identities = 106/400 (26%), Positives = 158/400 (39%), Gaps = 74/400 (18%)

Query: 36  LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTS--DQ 93
           L+ GEP    P  +K A+   ++ G   Y   AG+  LREAI     R   L       Q
Sbjct: 34  LSIGEPKHPTPAFIKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALDPATQ 92

Query: 94  IIVGTGAKHVIFNALMATVNMGDE---VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF 150
           ++   G++  +F      ++       V+ P P++  Y     L G  P F++    +NF
Sbjct: 93  VLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNF 152

Query: 151 QVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLR---ALADVLVRNPHVHIISDDIY 207
               + +   +  +T+ LF+ SP NP+G V   +  +   AL+D   R   V I SD+ Y
Sbjct: 153 APDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSD---RYGFV-IASDECY 208

Query: 208 EHIVYRNCQFSNIVNVEPSL-------------YERTLVVNGVSKAYAMTGLRIGYAAGA 254
             I +            P L             ++R +V + +SK   + GLR G+ AG 
Sbjct: 209 SEIYFDEAA--------PPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGD 260

Query: 255 LSLIKSMIVL---QGQQTSGAC---SIAQWAAVEALNGPQDFVVNNRKIFEYRR--DLCV 306
            +L+K  ++     G     A    SIA W         +  V  NR +  YR   D   
Sbjct: 261 AALLKKFLLYRTYHGCAMPPAVQAASIAAW-------NDEAHVRENRAL--YREKFDAVT 311

Query: 307 AQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS 366
             L  V  ++   PD  FYL+         K P GD    D +F   L     V V+ GS
Sbjct: 312 PILAPVLDVQL--PDAGFYLWA--------KVP-GD----DTEFARRLYADYNVTVLPGS 356

Query: 367 -----SFGHGPS---IRISYAVSDAILEEACVRIKRFCHS 398
                + G  P    +RI+     A   EA  RI  FC S
Sbjct: 357 YLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCRS 396


>gnl|CDD|180929 PRK07324, PRK07324, transaminase; Validated.
          Length = 373

 Score = 91.2 bits (227), Expect = 4e-19
 Identities = 71/355 (20%), Positives = 137/355 (38%), Gaps = 58/355 (16%)

Query: 64  YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIV---GTGAKHVIFNALMATVNMGDEVL- 119
           Y  + G    +EA+   ++     +   + I+     TGA  ++  AL   V  GD V+ 
Sbjct: 58  YGWIEGSPEFKEAVASLYQ-----NVKPENILQTNGATGANFLVLYAL---VEPGDHVIS 109

Query: 120 ----------IPRPYWVSYPDMVALCGGIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWL 168
                     IP               G  V +   ++++ +    ++L + + P TK +
Sbjct: 110 VYPTYQQLYDIPESL------------GAEVDYWQLKEENGWLPDLDELRRLVRPNTKLI 157

Query: 169 FLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLY 228
            +N+ +NP+G +  +  L  + ++  R+   +++SD++Y  +   +    +I +    LY
Sbjct: 158 CINNANNPTGALMDRAYLEEIVEI-ARSVDAYVLSDEVYRPLD-EDGSTPSIAD----LY 211

Query: 229 ERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ 288
           E+ +  N +SK Y++ G+R+G+ A    +I  +   +      A       A  AL    
Sbjct: 212 EKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRD 271

Query: 289 DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG---AFYLYPSCQDLIGKKSPSGDVIR 345
             +  NRKI      +    +   P + Y+ P     +F                 DV  
Sbjct: 272 AILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKL--------------DVDM 317

Query: 346 TDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ 400
              DF   LL+   V +V G+ F     +RI Y      L++   ++  F     
Sbjct: 318 PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREFD 372


>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional.
          Length = 394

 Score = 87.5 bits (217), Expect = 6e-18
 Identities = 96/380 (25%), Positives = 161/380 (42%), Gaps = 34/380 (8%)

Query: 27  RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRDN 85
           R +G+D++ L  G PD   P+ V  A + A+   +   Y    G +  R+AI + + R  
Sbjct: 31  REQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRY 90

Query: 86  DLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV---ALCGGI--P 139
            +    D + +   G+K  + +  +A VN GD VL+P P   +YP       + G    P
Sbjct: 91  GVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSP---AYPAHFRGPLIAGAQIYP 147

Query: 140 VFVDTQQD---DNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRN 196
           + +  + D   D   +  E  +QA     K L+ N PSNP+     +     +     R 
Sbjct: 148 IILKPENDWLIDLSSIPEEVAQQA-----KILYFNYPSNPTTATAPREFFEEIVA-FARK 201

Query: 197 PHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS 256
             + ++ D  Y  + +   Q ++++ + P   +  +  + +SK Y M G R+G+  G   
Sbjct: 202 YEIMLVHDLCYAELAFDGYQPTSLLEI-PGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRH 260

Query: 257 LIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIR 316
           +I+ +  L+     G  S  Q AA  AL  P  ++   ++ +  RRD  +  L G  G  
Sbjct: 261 IIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGL-GELGWN 319

Query: 317 YMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS--I 374
                   YL+  C        P G       DF   +L+   V V  G++FG G    +
Sbjct: 320 IPPTKATMYLWVPC--------PVG---MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYV 368

Query: 375 RISYAVSDAILEEACVRIKR 394
           RIS       L EA  R+K+
Sbjct: 369 RISLIADCDRLGEALDRLKQ 388


>gnl|CDD|180479 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
          Length = 380

 Score = 87.1 bits (216), Expect = 8e-18
 Identities = 88/361 (24%), Positives = 160/361 (44%), Gaps = 53/361 (14%)

Query: 46  PENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI 104
            E V+ A++R +E GE  KY    G   LRE I++      DL    D+ ++  GA   +
Sbjct: 43  HEEVREAMIRCIEEGEYCKYPPPEGFPELRELILK------DLGLDDDEALITAGATESL 96

Query: 105 FNALMATVNMGDEVLIPRPYWVSYPDMVALCGG----IPVFVDTQQDDNFQVSPEKLEQA 160
           +  + A ++ GD  + P P ++   +  +  G     +P++    ++ N++++PE +++ 
Sbjct: 97  YLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIY---SEECNYKLTPELVKEN 153

Query: 161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY--EHIVYRNCQFS 218
           +   T+ ++L  P NP G  Y++  ++  A++   N        D +      YR+  F+
Sbjct: 154 MDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDN--------DAFLLHDCTYRD--FA 203

Query: 219 N----IVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS--GA 272
                     P   E T+     SK + M GLRIG       LI+   V++    +  G 
Sbjct: 204 REHTLAAEYAP---EHTVTSYSFSKIFGMAGLRIGAVVATPDLIE---VVKSIVINDLGT 257

Query: 273 CSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQD 332
             IAQ AA+  L    +++   R+     + L    +  + G+   +P     +YPS  +
Sbjct: 258 NVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGV--FLP-----VYPSHGN 310

Query: 333 LIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS----SFGHGPSIRISYAVSDAILEEA 388
           ++     S   I  + D V  LLE  K+ V QG+     FG    IR+S+++    +E  
Sbjct: 311 MMVIDI-SEAGIDPE-DLVEYLLE-RKIFVRQGTYTSKRFGDR-YIRVSFSIPREQVEVF 366

Query: 389 C 389
           C
Sbjct: 367 C 367


>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
          Length = 409

 Score = 86.5 bits (214), Expect = 1e-17
 Identities = 96/387 (24%), Positives = 166/387 (42%), Gaps = 39/387 (10%)

Query: 33  VLCLTAGEPD----FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDL 87
           V+ L  G+P     F      + AVV A++  +   Y    G+   R AI E   RD   
Sbjct: 33  VISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPY 92

Query: 88  HYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPV-FVDTQQ 146
             + D + + +G    I  AL      G  +L+PRP +  Y ++ A    + V +VD   
Sbjct: 93  KLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIY-ELCAAFRHLEVRYVDLLP 151

Query: 147 DDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI 206
           +  ++V  + +E      T  L + +P NP G VYS   L+ +A+       + +I+D++
Sbjct: 152 EKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAET-AEKLKILVIADEV 210

Query: 207 YEHIVYRNCQ------FSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY---AAGALSL 257
           Y H+ + +        F +IV V        L +  +SK + + G R+G+      + S 
Sbjct: 211 YGHLAFGSNPFVPMGVFGSIVPV--------LTLGSLSKRWIVPGWRLGWFVTTDPSGSF 262

Query: 258 IKSMIVLQGQQ----TSGACSIAQWAAVEALNGPQD--FVVNNRKIFEYRRDLCVAQLQG 311
               IV + ++      G  +  Q AAV  +    D  F      I +   D+C  +++ 
Sbjct: 263 RDPKIVERIKKYFDILGGPATFIQ-AAVPTILEQTDESFFKKTINILKQSSDICCDRIKE 321

Query: 312 VPGIRY-MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH 370
           +P I     P+G+  +      ++       + I  D+DF   L   E V ++ G++ G 
Sbjct: 322 IPCITCPHKPEGSMAV------MVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL 375

Query: 371 GPSIRISYAVSDAILEEACVRIKRFCH 397
              +RI++A   + LEEA  RIK F  
Sbjct: 376 KNWLRITFAADPSSLEEALGRIKSFYL 402


>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase;
           Provisional.
          Length = 409

 Score = 85.4 bits (211), Expect = 2e-17
 Identities = 88/367 (23%), Positives = 152/367 (41%), Gaps = 43/367 (11%)

Query: 52  AVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA 110
           A+V A+   +   Y    GI P R AI +    D     + D + +  G KH     +  
Sbjct: 57  AIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKV 116

Query: 111 TVNMGDEVLIPRPYWVSYPDM--VALCGGIPV-FVDTQQDDNFQVSPEKLEQAITPKTKW 167
                  +L+PRP    +PD+   A+   + +   D   +  ++V  + +E      T  
Sbjct: 117 LARPEANILLPRP---GFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIA 173

Query: 168 LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSL 227
           + + +P NP G VYS   L  +A+   R   + +I+D++Y HIV+ +  F     V   L
Sbjct: 174 MVIINPGNPCGSVYSYEHLNKIAET-ARKLGILVIADEVYGHIVFGSKPF-----VPMGL 227

Query: 228 YERTLVV---NGVSKAYAMTGLRIGY-----AAGALSL------IKSMIVLQGQQTSGAC 273
           +   + V     +SK + + G  +G+      +G L +      IK  +           
Sbjct: 228 FASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALN----PAPFPP 283

Query: 274 SIAQWAAVEAL-NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP---DGAFYLYPS 329
           +  Q A  E L    +DF      I       C  +L+ +P I  M P   +GAF+    
Sbjct: 284 TFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCI--MCPQKAEGAFFALVK 341

Query: 330 CQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEAC 389
              L+ +       I  D++F   L + E + ++ G + G    +RI++AV  + LE+  
Sbjct: 342 LNLLLLED------IEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGL 395

Query: 390 VRIKRFC 396
            R+K FC
Sbjct: 396 GRLKSFC 402


>gnl|CDD|179178 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
           Validated.
          Length = 361

 Score = 83.4 bits (207), Expect = 9e-17
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 33/219 (15%)

Query: 52  AVVRAMERGETKYTAVAGI----SPLREAIVEKFRRDNDLHYTSDQIIV-GTGAKHVIFN 106
             V A+E+       ++ I     P    + E   +   +    + IIV G G   VI  
Sbjct: 51  KAVEAIEK------ELSKIHRYPEPDAPELREALSKYTGVP--VENIIVGGDGMDEVIDT 102

Query: 107 ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK 166
            +   ++ GDEV+IP P +  Y       G  PV+   +++++F +  + +  AIT KTK
Sbjct: 103 LMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYA--KREEDFSLDVDSVLNAITEKTK 160

Query: 167 WLFLNSPSNPSGVVYSQNRLRALA---DVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNV 223
            +FL +P+NP+G +  +  +R +    D LV     ++              +F+     
Sbjct: 161 VIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYV--------------EFAEYDYT 206

Query: 224 EPSL-YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSM 261
             +L Y+  ++    SK + + GLRIGY      LI   
Sbjct: 207 PLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYY 245


>gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase;
           Validated.
          Length = 388

 Score = 83.2 bits (206), Expect = 1e-16
 Identities = 93/397 (23%), Positives = 162/397 (40%), Gaps = 63/397 (15%)

Query: 27  RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRDN 85
           R+ G +++ L+ G  D   P +   A+ +++    T  Y    G    REA  + + +  
Sbjct: 26  RAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRF 85

Query: 86  DLHY---TSDQIIVGT--GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPV 140
            L     T    ++G+  G  H+     +A +N GD  L+  P + S+   V L GG   
Sbjct: 86  GLAVDPETEVLPLIGSQEGTAHLP----LAVLNPGDFALLLDPGYPSHAGGVYLAGGQIY 141

Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRL-RALADVLVRNPHV 199
            +  + +++F      +   +  + + + L+ P NP+  +   +    A+A    +   +
Sbjct: 142 PMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVA--FCQQHDL 199

Query: 200 HIISDDIYEHIVYRNCQFSNIVNVEPSLY----ERTLVVN--GVSKAYAMTGLRIGYAAG 253
            ++ D  Y  +V     F   V   PS+     E+++ +    +SK+Y M G RIG+A G
Sbjct: 200 VLVHDFPYVDLV-----FDGEVEP-PSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG 253

Query: 254 ------ALSLIKSMI-------VLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEY 300
                 AL  +K+++       +L G             A+ AL GPQ  V    +IF  
Sbjct: 254 NAQLIQALRQVKAVVDFNQYRGILNG-------------AIAALTGPQATVQQTVQIFRQ 300

Query: 301 RRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKV 360
           RRD  +  L  + G    +P+   Y++    +     S         ++F   L+    V
Sbjct: 301 RRDAFINALHQI-GWPVPLPEATMYVWAKLPEPWQGNS---------VEFCTQLVAQTGV 350

Query: 361 AVVQGSSFGHGPS--IRISYAVSDAILEEACVRIKRF 395
           A   GS FG      +R +      ILEEA  RI  F
Sbjct: 351 AASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAF 387


>gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional.
          Length = 374

 Score = 81.7 bits (202), Expect = 3e-16
 Identities = 92/387 (23%), Positives = 162/387 (41%), Gaps = 57/387 (14%)

Query: 29  KGIDVLCLTAGEPDFDMPENVKYAVVR--AMERGETKYTAVAGISPLREAIVEKFRRDND 86
           K    L LT GEP F+ P+ ++ A+     +     KY   AG   LREA    F+R   
Sbjct: 22  KEYKGLDLTIGEPQFETPKFIQDALKNNAHLLN---KYPKSAGEESLREAQRGFFKRRFK 78

Query: 87  LHYTSDQIIVGTGAKHVIFN----ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFV 142
           +    +++I   G + V+FN     L    N    +  P P++  Y           + +
Sbjct: 79  IELKENELIPTFGTREVLFNFPQFVLFDKQN--PTIAYPNPFYQIYEGAAIASRAKVLLM 136

Query: 143 DTQQDDNFQ--VSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVH 200
              ++++F   ++ ++L++        + LNSP+NP+G   S   L     + +++  + 
Sbjct: 137 PLTKENDFTPSLNEKELQEV-----DLVILNSPNNPTGRTLSLEELIEWVKLALKHDFI- 190

Query: 201 IISDDIYEHIVYRNCQFSNIVN----VEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS 256
           +I+D+ Y  I Y N    +++     V    ++  LV+N +SK  +  GLR G+ AG  S
Sbjct: 191 LINDECYSEI-YENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDAS 249

Query: 257 LIKSMIVLQGQQTSGACSIA---QWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQ-LQGV 312
           ++K        +T   C+     Q AA  A     +     R I  Y ++L +A+ + G+
Sbjct: 250 ILKKYKAY---RTYLGCASPLPLQKAAAVAWL-DDEHAEFFRNI--YAKNLKLAREILGI 303

Query: 313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGP 372
                 IP   FY++    +              D +F   L + E + V+ GS  G   
Sbjct: 304 T-----IPPATFYVWLPVDN--------------DEEFTKKLYQNEGIKVLPGSFLGRNG 344

Query: 373 S----IRISYAVSDAILEEACVRIKRF 395
                +RI+       LE+A   IK +
Sbjct: 345 IGKGYVRIALVYDTPKLEKALEIIKTY 371


>gnl|CDD|179465 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
           Validated.
          Length = 367

 Score = 81.0 bits (201), Expect = 5e-16
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 22/222 (9%)

Query: 73  LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132
           L+ A+ EKF  D       ++II+G G+  ++     A +  GDEV+     +  YP + 
Sbjct: 72  LKAALAEKFGVD------PERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYP-IA 124

Query: 133 AL-CGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD 191
           A   G  PV V      ++    + +  A+TP+T+ +F+ +P+NP+G       +     
Sbjct: 125 AQAVGAKPVEV---PAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLA 181

Query: 192 VLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA 251
            +   P V ++ D+ Y   V R      +  V    +   +V    SKAY + GLR+GY 
Sbjct: 182 GV--PPDVLVVLDEAYAEYVRRKDYEDGLELVA--KFPNVVVTRTFSKAYGLAGLRVGYG 237

Query: 252 AGALSLIKSM--IVLQGQQTSGACSIAQWAAVEALNGPQDFV 291
                +I ++  +    +Q     S+A  AAV AL+    FV
Sbjct: 238 IAPPEIIDALNRV----RQPFNVNSLALAAAVAALDD-DAFV 274


>gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional.
          Length = 352

 Score = 76.9 bits (190), Expect = 8e-15
 Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 52/237 (21%)

Query: 68  AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVS 127
            G   LR A+ E            + + VG G+  +    + AT   GDEV+     W S
Sbjct: 57  MGAVELRAALAEHL------GVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFA---WRS 107

Query: 128 ---YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQN 184
              YP +V + G  PV V    D    +  + +  AIT +T+ +F+ +P+NP+G V +  
Sbjct: 108 FEAYPILVQVAGATPVQVPLTPDHTHDL--DAMAAAITDRTRLIFVCNPNNPTGTVVTPA 165

Query: 185 RLRALADVLVRNP-HVHIISDDIYEHIV-----------YRNCQFSNIVNVEPSLYERTL 232
            L    D     P  V ++ D+ Y   V            R     N+V +      RT 
Sbjct: 166 ELARFLD---AVPADVLVVLDEAYVEYVRDDDVPDGLELVR--DHPNVVVL------RTF 214

Query: 233 VVNGVSKAYAMTGLRIGYAAG----ALSLIKSMIVLQGQQTSGACSIAQWAAVEALN 285
                SKAY + GLR+GYA G      +L K  +           S+AQ AA+ +L 
Sbjct: 215 -----SKAYGLAGLRVGYAVGHPEVIAALRKVAVPF------SVNSLAQAAAIASLA 260


>gnl|CDD|180514 PRK06290, PRK06290, aspartate aminotransferase; Provisional.
          Length = 410

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 13/294 (4%)

Query: 39  GEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYT--SDQIIV 96
           GEPD    E+V   +    ++ E +  A  GI   +EA      +   +       ++I 
Sbjct: 52  GEPDEMADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIH 111

Query: 97  GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM---VALCGGIPVFVDTQQDDNFQVS 153
             G+K  +       +N GD  L+  P    YP         GG    +   +++NF   
Sbjct: 112 SIGSKPALAMLPSCFINPGDVTLMTVP---GYPVTGTHTKYYGGEVYNLPLLEENNFLPD 168

Query: 154 PEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYR 213
            + + + I  K K L+LN P+NP+G V ++     + D    N ++ ++ D  Y  + + 
Sbjct: 169 LDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKEN-NIIVVQDAAYAALTFD 227

Query: 214 NCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGAC 273
               S  ++V  +  E  + ++ +SKAY MTG R+ +  G   ++K+   ++    SG  
Sbjct: 228 GKPLS-FLSVPGAK-EVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDSGQF 285

Query: 274 SIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLY 327
              Q A + AL+ P +     R+ +  R D  V  L  V G +  +P G FYLY
Sbjct: 286 IAIQKAGIYALDHP-EITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFYLY 337


>gnl|CDD|178217 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase.
          Length = 447

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 88/359 (24%), Positives = 163/359 (45%), Gaps = 52/359 (14%)

Query: 69  GISPLREAI---VEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV--NMGDEVLIPRP 123
           G+   R+A+   +E+ R      +  D+I++  GA     N L+  +  + GD +L+P P
Sbjct: 96  GLKSFRQAMASFMEQIR-GGKARFDPDRIVLTAGATAA--NELLTFILADPGDALLVPTP 152

Query: 124 YWVSYP----DMVALCGG--IPVFVDTQQDDNFQVSPEKLE------QAITPKTKWLFLN 171
           Y   YP    D+    G   +P+  D+   +NFQV+P+ LE      +A   + + + + 
Sbjct: 153 Y---YPGFDRDLRWRTGVKIVPIHCDSS--NNFQVTPQALEAAYQEAEAANIRVRGVLIT 207

Query: 172 SPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNV-----EPS 226
           +PSNP G    ++ L  + D +VR  ++H++SD+IY   V+   +F ++  +        
Sbjct: 208 NPSNPLGATVQRSVLEDILDFVVRK-NIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKG 266

Query: 227 LYERTLVVNGVSKAYAMTGLRIG----YAAGALSLIKSM--IVLQGQQTSGACSIAQWAA 280
           + ER  +V  +SK   + G R+G    Y    ++  + M    L   QT     +A   +
Sbjct: 267 VAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQH--LLASMLS 324

Query: 281 VEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPS 340
            E     ++++  NR+    R ++ V  L+   GI  +  +   + + +   L+   +  
Sbjct: 325 DEEFT--ENYIRTNRERLRKRYEMIVQGLR-RAGIECLKGNAGLFCWMNLSPLLETPTRE 381

Query: 341 GDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS---IRISYA-VSDAILEEACVRIKRF 395
           G     +L   + +L   K+ +  GSS  H       R+ +A +S+  LE A  RI RF
Sbjct: 382 G-----ELALWDSILREVKLNISPGSSC-HCSEPGWFRVCFANMSEDTLEVALKRIHRF 434


>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 351

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 75/339 (22%), Positives = 140/339 (41%), Gaps = 72/339 (21%)

Query: 36  LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISP------LREAIVEKFRRDNDLHY 89
           + A E  F++PE V   +       E   ++   I P      LRE +            
Sbjct: 27  MDANETPFELPEEVIKNI------QEIVKSSQVNIYPDPTAEKLREELARY------CSV 74

Query: 90  TSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDN 149
               I VG G+  +I   ++A +N GD V+ P P +  Y     + G + + V  ++D  
Sbjct: 75  VPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYT 134

Query: 150 FQVSPEKLEQAITP-KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE 208
           + V      + I   + K +FL +P+NP+G V  +     +  ++ ++  + ++ +  +E
Sbjct: 135 YDV--GSFIKVIEKYQPKLVFLCNPNNPTGSVIERED---IIKIIEKSRGIVVVDEAYFE 189

Query: 209 HIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA------GALSLIKSMI 262
                   + N +    + +E  +V+  +SKA+ + GLR+GYA         L+L+KS  
Sbjct: 190 F-------YGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSPY 242

Query: 263 VLQGQQTSGACSIAQWAAVEALNGPQ-----DFVVNNRKIFEYRRDLCVAQLQGVPGIRY 317
            +         S++Q  A++ L         ++++N R+         + +L  +PGI+ 
Sbjct: 243 NIN--------SLSQVIALKVLRTGVLKERVNYILNERERL-------IKELSKIPGIK- 286

Query: 318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLE 356
                   +YPS  + I  K    D          GLLE
Sbjct: 287 --------VYPSKTNFILVKFKDAD------YVYQGLLE 311


>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 380

 Score = 67.0 bits (164), Expect = 7e-12
 Identities = 74/265 (27%), Positives = 119/265 (44%), Gaps = 33/265 (12%)

Query: 72  PLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM 131
            LR A+ E      D    S+ I+VG GA  +I   +   ++ GD+++   P +  Y   
Sbjct: 90  RLRAALAE------DSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFD 143

Query: 132 VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD 191
            A+ G   + V    D +  V P  +E   T K K LFL SP+NP G + S + L  + +
Sbjct: 144 AAVNGAEVIKVPRTPDFSLDV-PRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILE 202

Query: 192 --VLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG 249
             +LV       + D+ Y  I +   + S +  V+   Y+  +V+   SK   + GLR+G
Sbjct: 203 LPILV-------VLDEAY--IEFSTQE-SRMKWVKK--YDNLIVLRTFSKRAGLAGLRVG 250

Query: 250 YAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQL 309
           Y A  LS+I+ +   + +Q       A+ AA  AL+ P+        + E R  L    L
Sbjct: 251 YGAFPLSIIEYL--WRAKQPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERL-FGLL 307

Query: 310 QGVPGIRYMIPDGAFYLYPSCQDLI 334
           + VP   ++ P      YPS  + I
Sbjct: 308 KEVP---FLEP------YPSDANFI 323


>gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 337

 Score = 67.1 bits (164), Expect = 8e-12
 Identities = 55/262 (20%), Positives = 102/262 (38%), Gaps = 41/262 (15%)

Query: 4   ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK 63
           I  +++  +P   +    R+            L   E  FD+PE +K  +   ++R    
Sbjct: 2   IRELVKSFKPYRVVEGNYRIW-----------LDKNENPFDLPEELKEEIFEELKRVPFN 50

Query: 64  YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRP 123
                   PLREAI E           ++ I VG G+  +I  + +  +  G  ++I  P
Sbjct: 51  RYPHITSDPLREAIAEF------YGLDAENIAVGNGSDELI--SYLVKLFEGKHIVITPP 102

Query: 124 YWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQ 183
            +  Y    A   GIPV +D    ++F +  E++          +F+ SP+NP+G +  +
Sbjct: 103 TFGMY-SFYAKLNGIPV-IDVPLKEDFTIDGERIA-EKAKNASAVFICSPNNPTGNLQPE 159

Query: 184 NR-LRAL---ADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK 239
              L+ L     V++   +       +   I                 Y   +++   SK
Sbjct: 160 EEILKVLETGKPVVLDEAYAEFSGKSLIGLI---------------DEYPNLILLRTFSK 204

Query: 240 AYAMTGLRIGYAAGALSLIKSM 261
           A+ + G+R GYA     +I ++
Sbjct: 205 AFGLAGIRAGYAIANEEIIDAL 226


>gnl|CDD|181151 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase;
           Reviewed.
          Length = 364

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 75/309 (24%), Positives = 121/309 (39%), Gaps = 48/309 (15%)

Query: 36  LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF-RRDNDLHYTSDQI 94
           L+ G P   +P  ++ A+  A +     Y   AG   LREAIV    RR          +
Sbjct: 32  LSVGTPVDPVPPVIQEALAAAAD--APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAV 89

Query: 95  IVGTGAKHVIFNALMAT---VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQ 151
           +   G+K ++  A + T   +  GD V+IP   + +Y     L G   V  D       +
Sbjct: 90  LPVIGSKELV--AWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD----SLTE 143

Query: 152 VSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIV 211
           + P++           ++LNSPSNP+G V   + LR +     R     + SD+ Y  + 
Sbjct: 144 LGPQRP--------ALIWLNSPSNPTGRVLGVDHLRKVVA-WARERGAVVASDECYLELG 194

Query: 212 Y----------RNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSM 261
           +          R C            +   L V+ +SK   + G R G+ AG  +L+  +
Sbjct: 195 WDAEPVSILDPRVCGGD---------HTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAEL 245

Query: 262 IVLQ---GQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM 318
           + ++   G          Q A V AL G    V   R+ +  RR +    L+   G R  
Sbjct: 246 LEVRKHAGMMVPAP---VQAAMVAAL-GDDAHVREQRERYARRRAVLRPALEAA-GFRVD 300

Query: 319 IPDGAFYLY 327
             +   YL+
Sbjct: 301 HSEAGLYLW 309


>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase.  This
           family of actinobacterial succinyldiaminopimelate
           transaminase enzymes (DapC) are members of the pfam00155
           superfamily. Many of these genes appear adjacent to
           other genes encoding enzymes of the lysine biosynthesis
           via diaminopimelate pathway (GenProp0125).
          Length = 357

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 78/303 (25%), Positives = 125/303 (41%), Gaps = 36/303 (11%)

Query: 36  LTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF-RRDNDLHYTSDQI 94
           L+ G P   +P  ++ A+  A +     Y    G   LREAIV+   RR          +
Sbjct: 26  LSVGTPVDPVPPLIRAALAAAAD--APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAV 83

Query: 95  IVGTGAKHVIFNALMAT---VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQ 151
           +   G K ++  A + T   +  GD V+IP   + +Y     L G  PV  D        
Sbjct: 84  LPVIGTKELV--AWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD-------- 133

Query: 152 VSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIV 211
             P +L+         ++LNSP NP+G V S + LRA+     R     + SD+ Y  + 
Sbjct: 134 -DPTELDPV---GPDLIWLNSPGNPTGRVLSVDELRAIVA-WARERGAVVASDECYLELG 188

Query: 212 YRNCQFSNIVNV-EPSL----YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQG 266
           +        V++ +P +    +   L V+ +SK   + G R G+ AG  +L+  +  L  
Sbjct: 189 WE----GRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAEL--LTV 242

Query: 267 QQTSGACSIA--QWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAF 324
           ++ +G    A  Q A V AL G    V   +  +  RR      L+   G R    +   
Sbjct: 243 RKHAGLMVPAPVQAAMVAAL-GDDGHVAEQKARYAARRAQLKPALE-KAGFRIDHSEAGL 300

Query: 325 YLY 327
           YL+
Sbjct: 301 YLW 303


>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.
          Length = 354

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 51/240 (21%), Positives = 110/240 (45%), Gaps = 19/240 (7%)

Query: 27  RSKGID---VLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR 83
           R KG+    +L  +A      +PE++K A+   +++   +Y     +  LR+ I      
Sbjct: 12  REKGLTKNMILDFSANINPLGVPESLKQAITENLDKLV-EYPDPDYLE-LRKRIAS---- 65

Query: 84  DNDLHYTS-DQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFV 142
                    + +I+G GA  +IFN +  T     +VLI  P +  Y   +        + 
Sbjct: 66  ---FEQLDLENVILGNGATELIFNIVKVT--KPKKVLILAPTFAEYERALKAFDAEIEYA 120

Query: 143 DTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHII 202
           +  ++ NF  + E + + I  +   +FL +P+NP+G + S+  ++ + D   +  ++++I
Sbjct: 121 ELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKR-NIYLI 178

Query: 203 SDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMI 262
            D+ +   +  N   S I  +E   ++  +++   +K +A+ GLR+GY   +   +   +
Sbjct: 179 IDEAFMDFLEENETISMINYLEN--FKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKL 236


>gnl|CDD|183263 PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate
           aminotransferase; Provisional.
          Length = 379

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 98  TGAKHVIFNALMAT-VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEK 156
           T   H+    LMA  +  GDEV+ P   WVS  +M+ L G  PV VD  + D   V+PE 
Sbjct: 58  TAGMHI---TLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDR-DTLMVTPEA 113

Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD 191
           +E AITP+TK +    P + +G     + +RA+ +
Sbjct: 114 IEAAITPRTKAII---PVHYAGAPADLDAIRAIGE 145


>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase.  This
           clade of the pfam00155 superfamily of aminotransferases
           includes several which are adjacent to elements of the
           lysine biosynthesis via diaminopimelate pathway
           (GenProp0125). This clade includes characterized species
           in plants and Chlamydia. Every member of this clade is
           from a genome which possesses most of the lysine
           biosynthesis pathway but lacks any of the known
           succinylases, desuccinylases, acetylases or deacetylases
           typical of the acylated versions of this pathway nor do
           they have the direct, NADPH-dependent enzyme (ddh).
          Length = 402

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 100/402 (24%), Positives = 155/402 (38%), Gaps = 50/402 (12%)

Query: 20  AQRVRDLRSKG--IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISP----- 72
            +RV + R K    D++ L  G+    +P +V  A   A++   ++ T   G  P     
Sbjct: 20  NRRVNEFRKKHPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASEET-FRGYGPEQGYP 78

Query: 73  -LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM 131
            LREAI E   R        ++I +  GAK  +F  L +     + V +  P + +Y D 
Sbjct: 79  FLREAIAENDYRG---RIDPEEIFISDGAKCDVFR-LQSLFGSDNTVAVQDPVYPAYVDS 134

Query: 132 VALCGGIPVFVDTQQDDNFQVSPEKLEQAITP------KTKWLFLNSPSNPSGVVYSQNR 185
             + G   V  D  +       P   E    P      K   ++L SP+NP+G V ++ +
Sbjct: 135 NVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQ 194

Query: 186 LRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG 245
           L+ L D    +  + I+ D  Y   +       +I  + P   E  +     SK    TG
Sbjct: 195 LKELVDYANEHGSL-ILFDAAYSAFISDPSLPHSIFEI-PGAKECAIEFRSFSKTAGFTG 252

Query: 246 LRIGY--------AAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKI 297
           +R+G+         A   S+I+     Q  + +GA    Q AA EA    +        I
Sbjct: 253 VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAA-EAAYAGEGLQPILEAI 311

Query: 298 FEYRR--DLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLL 355
             Y     +    L+   G +    + A YL+         K+P G    +  DF + LL
Sbjct: 312 SYYMENARILRKALEAA-GFKVYGGEHAPYLW--------VKTPEG---ISSWDFFDFLL 359

Query: 356 EIEKVAVVQGSSFGHGPS----IRISYAVSDAILEEACVRIK 393
               V    GS F  GPS    +R S       + EAC RIK
Sbjct: 360 YQYHVVGTPGSGF--GPSGEGFVRFSAFGKRENIVEACERIK 399


>gnl|CDD|181748 PRK09275, PRK09275, aspartate aminotransferase; Provisional.
          Length = 527

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 25/165 (15%)

Query: 97  GTGAKHVIFNALMAT--VNMGDEVLIPRPYWVSYPDMVALCGGIP---------VFVDTQ 145
           GT A   IF++L     +  GD++ +  P +  Y +       IP         V ++  
Sbjct: 170 GTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLE-------IPELPRYDLEVVHINAD 222

Query: 146 QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD-VLVRNPHVHIISD 204
           +++ +Q    +LE+   P  K LFL +PSNP  V  S   L  +AD V  + P + II+D
Sbjct: 223 EENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITD 282

Query: 205 DIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG 249
           D+Y   V     F ++  V P     T++V   SK +  TG R+G
Sbjct: 283 DVYGTFVD---DFRSLFAVLP---YNTILVYSFSKYFGATGWRLG 321


>gnl|CDD|179449 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 374

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 75/304 (24%), Positives = 133/304 (43%), Gaps = 30/304 (9%)

Query: 36  LTAGEPDFDMPENVKYAVVRAMERG-ETKYTAVAGISPLREAIVEKFRRDNDLHY--TSD 92
           L   E  +D+P ++K  +    ++G E+      G   L++AI E            T  
Sbjct: 33  LDTNEFPYDLPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPA 92

Query: 93  QIIVGTGAKHVIFNALMATVNMGDE--VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF 150
            I VG G+  +I + L+AT  +G E  +L+  P +  Y  ++A   GIPV    +  + F
Sbjct: 93  NISVGNGSDELIRSLLIATC-LGGEGSILVAEPTFSMY-GILAQTLGIPVVRVGRDPETF 150

Query: 151 QVSPEKLEQAIT----PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI 206
           ++     + AI     P  + +F+  P++P+G   +   L  L  +      + ++ D+ 
Sbjct: 151 EIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSL---PEDILVVIDEA 207

Query: 207 YEHIVYRNCQFSNIVNVEPSLYERT--LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVL 264
           Y    +   Q + +      L +    +++   SKA+ +   R+GYA G   LI    VL
Sbjct: 208 Y----FEFSQTTLV----GELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELI---AVL 256

Query: 265 QGQQTS-GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA 323
           +  +      S +Q AA  AL   Q+ +    +I + R  L    LQ +P +R + P  A
Sbjct: 257 EKVRLPYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRL-YQALQELPQLR-VWPSAA 314

Query: 324 FYLY 327
            +LY
Sbjct: 315 NFLY 318


>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase.
          Length = 496

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 16/196 (8%)

Query: 69  GISPLREAIVEKF--RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWV 126
           G+   R+AI       R   + +  +++++  GA       +    + GD  LIP PY+ 
Sbjct: 95  GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYA 154

Query: 127 SYPDMVALCGGIPVF-VDTQQDDNFQVSPEKLE------QAITPKTKWLFLNSPSNPSGV 179
           ++   +    G+ +  V     DNF+++ +  +      Q    K K L L +PSNP G 
Sbjct: 155 AFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGT 214

Query: 180 VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNI------VNVEPSLYERTLV 233
           +  ++ L  L   + R  ++H++ D+IY   V+    F ++      V++     +   +
Sbjct: 215 MLDKDTLTNLVRFVTRK-NIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHI 273

Query: 234 VNGVSKAYAMTGLRIG 249
           V  +SK   + G R+G
Sbjct: 274 VYSLSKDMGLPGFRVG 289


>gnl|CDD|162222 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase.
            This family contains pyridoxal phosphate-binding class
           II aminotransferases (see PFAM:PF00222) closely related
           to, yet distinct from, histidinol-phosphate
           aminotransferase (HisC). It is found in cobalamin
           biosynthesis operons in Salmonella typhimurium and
           Bacillus halodurans (each of which also has HisC) and
           has been shown to have L-threonine-O-3-phosphate
           decarboxylase activity in Salmonella. Although the gene
           symbol cobD was assigned in Salmonella, cobD in other
           contexts refers to a different cobalamin biosynthesis
           enzyme, modeled by pfam03186 and called cbiB in
           Salmonella.
          Length = 330

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 27/244 (11%)

Query: 73  LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132
           LR A    +         +  ++   GA+  I+  L+  +     VL+  P +  Y    
Sbjct: 52  LRAAAAAYYGLP------AASVLPVNGAQEAIY--LLPRLLAPGRVLVLAPTYSEYARAW 103

Query: 133 ALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192
              G   V +            ++L  A+      L L +P+NP+G +     L ALA  
Sbjct: 104 RAAGHEVVELPD---------LDRLPAALEE-LDVLVLCNPNNPTGRLIPPETLLALAAR 153

Query: 193 LVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA 252
           L R     ++ D+ +          S         +   +V+  ++K + + GLR+G+  
Sbjct: 154 L-RARGGWLVVDEAFIDFTP---DASLAPQAAR--FPGLVVLRSLTKFFGLAGLRLGFVV 207

Query: 253 GALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV 312
              +L+  +    G  T      A+ A   AL     +    R      R    A L  +
Sbjct: 208 AHPALLARLREALGPWTVNG--PARAAGRAALA-DTAWQAATRARLAAERARLAALLARL 264

Query: 313 PGIR 316
            G+ 
Sbjct: 265 GGLE 268


>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase.
          Length = 468

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 23/200 (11%)

Query: 69  GISPLREAIVEKFR--RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWV 126
           G+   + A+ E     R N + +  +++++  GA       +      GD  L+P PY  
Sbjct: 87  GLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPY-- 144

Query: 127 SYP----DMVALCGGIPVFVDTQQDDNFQVSPEKLEQA------ITPKTKWLFLNSPSNP 176
            YP    D+    G   V +     + FQ++   LE+A      +  K K + + +PSNP
Sbjct: 145 -YPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNP 203

Query: 177 SGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNV-------EPSLYE 229
            G   ++  L  L D  +   ++H+ISD+IY   V+ +  F +++ V          +  
Sbjct: 204 LGTTTTRTELNLLVD-FITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSN 262

Query: 230 RTLVVNGVSKAYAMTGLRIG 249
           R  +V  +SK   + G R+G
Sbjct: 263 RVHIVYSLSKDLGLPGFRVG 282


>gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 371

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 17/182 (9%)

Query: 73  LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132
           LREAI  +     D      +II+G G++ +I     A +  GD V+   P +  + D  
Sbjct: 76  LREAIAARTGVPAD------RIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYP 129

Query: 133 ALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192
            + G     V    D  F +  + L  A+    + L  ++PSNP G   + ++L  + D 
Sbjct: 130 TMMGARVERVTVTPDLGFDL--DALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDA 187

Query: 193 LVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTL---VVNGVSKAYAMTGLRIG 249
               P   I+ D+ Y           +  +    L  R L   V+   SKAY + GLR+G
Sbjct: 188 T--PPETLIVVDEAY----AEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVG 241

Query: 250 YA 251
           Y 
Sbjct: 242 YG 243


>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 357

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 12/165 (7%)

Query: 90  TSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDN 149
           + +Q+ +  G    +     A ++ GD VL+P P +  Y        G        + D+
Sbjct: 81  SPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADD 140

Query: 150 FQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEH 209
           F+ + + +  A   + + ++L SP NP+G     + + ALA+    +    ++ D+ Y  
Sbjct: 141 FEQTADTVLDAYDGE-RIVYLTSPHNPTGSEIPLDEVEALAERT--DEETLVVVDEAYG- 196

Query: 210 IVYRNCQFSNIVNVEPSLYER--TLVVNGVSKAYAMTGLRIGYAA 252
                 +F+   +    + ER    V+   SKAY + GLR+GYA 
Sbjct: 197 ------EFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAV 235


>gnl|CDD|179546 PRK03158, PRK03158, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 359

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 26/249 (10%)

Query: 47  ENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFN 106
             VK A+  A    E           LR  + +       L    +Q++ G G   VI  
Sbjct: 45  PKVKEAI--AAHLDELALYPDGYAPELRTKVAKH------LGVDEEQLLFGAGLDEVIQM 96

Query: 107 ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK 166
              A +N G   ++  P +  Y     + G     V  +   +     E + +AI  +TK
Sbjct: 97  ISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDEQTK 153

Query: 167 WLFLNSPSNPSGVVYSQNRLRALADVLVRNP-HVHIISDDIYEHIVYRNCQFSNIVNVEP 225
            +++ +P+NP+G   +   L +    L   P HV ++ D+ Y   V     + + +   P
Sbjct: 154 IVWICNPNNPTGTYVNHEELLSF---LESVPSHVLVVLDEAYYEYVTAE-DYPDTL---P 206

Query: 226 SL--YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSM-IVLQGQQTSGACSIAQWAAVE 282
            L  YE  +V+   SKAY +  LR+GY   +  LI+ + I      T+    IAQ+AA+ 
Sbjct: 207 LLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPPFNTT---RIAQYAAIA 263

Query: 283 ALNGPQDFV 291
           AL   Q F+
Sbjct: 264 ALED-QAFL 271


>gnl|CDD|185585 PTZ00377, PTZ00377, alanine aminotransferase; Provisional.
          Length = 481

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 91/390 (23%), Positives = 153/390 (39%), Gaps = 66/390 (16%)

Query: 54  VRAMERGETKYTAVAGISPLREAIVEKF--RRDNDLHYTSDQIIVGTGAK---HVIFNAL 108
           + A+  G   YT  AG   +R+A+   F  RRD      SD I +  GA     ++   L
Sbjct: 101 LNAIGGGTGAYTDSAGYPFVRKAVA-AFIERRDGVPKDPSD-IFLTDGASSGIKLLLQLL 158

Query: 109 MATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA-------- 160
           +   +  D V+IP P +  Y   + L GG  V     ++  + +  E+LE+A        
Sbjct: 159 IG--DPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNG 216

Query: 161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVY----RNCQ 216
           ITP+   L + +P NP+G V +++ +  +         V +++D++Y+  +Y        
Sbjct: 217 ITPRA--LVVINPGNPTGQVLTRDVMEEIIKFCYEKGIV-LMADEVYQENIYDGEKPFIS 273

Query: 217 FSNIVNVEPSLYERTLVV---NGVSKA-YAMTGLRIGYAAGALSLIKSMIVLQGQQ--TS 270
           F  ++   P+ Y   + +   +  SK      G R GY    L+ I   +  Q  +  + 
Sbjct: 274 FRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYF--ELTNIPPEVREQIYKLASI 331

Query: 271 GACS--IAQWAAVEALNGP-------QDFVVNNRKIFE--YRRDLCVAQ-LQGVPGIRYM 318
             CS  + Q       N P         +      IF    RR   +   L  + G+   
Sbjct: 332 NLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQ 391

Query: 319 IPDGAFYLYPS----------CQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF 368
             +GA Y +P            ++     +P       D+ +   LLE   + VV GS F
Sbjct: 392 PVEGAMYAFPRIELPEKAIQEAKER--GLAP-------DVLYCLELLESTGIVVVPGSGF 442

Query: 369 GHGPS---IRISYAVSDAILEEACVRIKRF 395
           G  P     RI+    +  +EE   +IK F
Sbjct: 443 GQKPGTYHFRITILPPEEQIEEMVKKIKEF 472


>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional.
          Length = 388

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 56/251 (22%), Positives = 96/251 (38%), Gaps = 30/251 (11%)

Query: 64  YTAVAGISPLREAIVEKFRRDN-DLHYTSDQI---IVGTGAKHVIFNALMATVNMGDEVL 119
           Y    GI  LR+   EK  R+N  L  +  ++   IV     H +       V+ GD VL
Sbjct: 40  YAPPQGIPELRDLWQEKMLRENPSL--SGKKMSLPIVTNALTHGLSLVADLFVDQGDTVL 97

Query: 120 IPRPYWVSYPDMVAL-CGGIPVFVDTQQDDN-FQVSP--EKLEQAITPKTKWLFLNSPSN 175
           +P   W +Y        G   V      +D  F      E L+ A       + LN P+N
Sbjct: 98  LPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNN 157

Query: 176 PSGVVYSQNRLRALADVLV----RNPHVHIISDDIYEHIVYRNCQ----FSNIVNVEPSL 227
           P+G   ++    A+ + +         V  + DD Y  + Y +      F+ + N+  ++
Sbjct: 158 PTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNI 217

Query: 228 YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQG--QQTSGA-------CS-IAQ 277
               + ++G +K   + G R+G+         S  V +   ++  G            +Q
Sbjct: 218 L--AVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQ 275

Query: 278 WAAVEALNGPQ 288
            A + ALN P+
Sbjct: 276 SAVLRALNSPE 286


>gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase.  This enzyme,
           aspartate 4-decarboxylase (EC 4.1.1.12), removes the
           side-chain carboxylate from L-aspartate, converting it
           to L-alanine plus carbon dioxide. It is a PLP-dependent
           enzyme, homologous to aspartate aminotransferase (EC
           2.6.1.1).
          Length = 521

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 30/170 (17%)

Query: 97  GTGAKHVIFNALMAT--VNMGDEVLIPRPYWVSYPDMVALCGGIP---------VFVDTQ 145
           GT A   IF++L A   +  GD++ +  P +  Y +       IP         V +   
Sbjct: 164 GTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLE-------IPELPRYDFEVVRIKAD 216

Query: 146 QDDN-----FQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD-VLVRNPHV 199
           +        +Q   ++LE+   P  K LF+ +PSNP  V  S   +  + D V    P +
Sbjct: 217 EMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDL 276

Query: 200 HIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG 249
            I++DD+Y   V     F ++    P     T+ V   SK +  TG R+G
Sbjct: 277 MILTDDVYGTFVD---DFRSLFAELP---YNTIGVYSFSKYFGATGWRLG 320


>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase;
           Validated.
          Length = 366

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 15/218 (6%)

Query: 68  AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVS 127
            G + LR+ I  K      LH   +Q++ G+G   VI     A +  GD ++     +  
Sbjct: 64  GGATTLRQTIANK------LHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQ 117

Query: 128 YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLR 187
           Y     + G     V     +N     +++   +   TK +++ +P+NP+G   +  +L 
Sbjct: 118 YRHHAIIEG---CEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLT 174

Query: 188 ALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLR 247
              + +  N  + +I +  YE++  ++  F   + +    ++  LV+   SKAY +   R
Sbjct: 175 QFIEGISENTLI-VIDEAYYEYVTAKD--FPETLPLLEK-HKNILVLRTFSKAYGLASFR 230

Query: 248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALN 285
           +GYA G   LI+ + V+  +      S+AQ AA  A  
Sbjct: 231 VGYAVGHEELIEKLNVV--RLPFNVSSLAQKAATIAFG 266


>gnl|CDD|183283 PRK11706, PRK11706, TDP-4-oxo-6-deoxy-D-glucose transaminase;
           Provisional.
          Length = 375

 Score = 54.1 bits (131), Expect = 7e-08
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 107 ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK 166
           AL+  +  GDEV++P   +VS  +   L G   VFVD  + D   +    +E AITPKT+
Sbjct: 63  ALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI-RPDTMNIDETLIEAAITPKTR 121


>gnl|CDD|181860 PRK09440, avtA, valine--pyruvate transaminase; Provisional.
          Length = 416

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 74/355 (20%), Positives = 130/355 (36%), Gaps = 53/355 (14%)

Query: 64  YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTG---AKHVIFNALMATVNMGD--EV 118
           Y    G   L EA+          + +   I +  G   A   +FN        G   ++
Sbjct: 70  YDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKI 129

Query: 119 LIP-RPYWVSYPDMVALCGGIPVFVDTQQD----DN----FQVSPEKLEQAITPKTKWLF 169
           L P  P ++ Y D   L   +  FV  + +          + V  E L   I   T  + 
Sbjct: 130 LFPLAPEYIGYAD-AGLEEDL--FVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAIC 184

Query: 170 LNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYE 229
           ++ P+NP+G V +   L  L D L R  ++ ++ D+ Y    +    FS      P    
Sbjct: 185 VSRPTNPTGNVLTDEELEKL-DALARQHNIPLLIDNAYG-PPFPGIIFS---EATPLWNP 239

Query: 230 RTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQD 289
             ++   +SK   + G+R G       +I+++  + G  +     +    A E +     
Sbjct: 240 NIILCMSLSKL-GLPGVRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL 298

Query: 290 FVVNNRKIFEY---RRDLCVAQL-QGVPGIRYMI--PDGAFYLYPSCQDL-IGKKSPSGD 342
             ++   I  +   +  L +A L + +P    +I  P+GA +L+   +DL I        
Sbjct: 299 LRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLPI-------- 350

Query: 343 VIRTDLDFVNGLLEIEKVAVVQGSSFGHG---------PSIRISYAVSDAILEEA 388
              T  +     L+   V VV G  F  G           IR++Y   D  +E+ 
Sbjct: 351 ---TTEELYQ-RLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKG 401


>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase.
          Length = 534

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 83/346 (23%), Positives = 141/346 (40%), Gaps = 38/346 (10%)

Query: 59  RGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAK---HVIFNALMATVNMG 115
           R    Y+   GI  LR+AI       +      + I +  GA    H++   L+ +    
Sbjct: 159 RATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEK-- 216

Query: 116 DEVLIPRPYWVSYPDMVALCGG--IPVFVDTQQDDNFQVSPEK--LEQA----ITPKTKW 167
           D +L P P +  Y   +AL GG  +P ++D       ++S  K  LE A    IT +   
Sbjct: 217 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRA-- 274

Query: 168 LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVY-RNCQFSNIVNVEPS 226
           L + +P NP+G V ++   R + +   +   + +++D++Y+  VY  + +F +   V  S
Sbjct: 275 LVVINPGNPTGQVLAEENQRDIVE-FCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARS 333

Query: 227 L--YERTLVV---NGVSKA-YAMTGLRIGY--AAGALSLIKSMIVLQGQQTSGACSIAQW 278
           +   E+ + +     VSK  Y   G R GY    G  S ++  I         +    Q 
Sbjct: 334 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQI 393

Query: 279 AAVEALNGP-------QDFVVNNRKIFEY--RRDLCVAQ-LQGVPGIRYMIPDGAFYLYP 328
            A   ++ P       + ++     I     RR   +   L  + G+     +GA YL+P
Sbjct: 394 LASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFP 453

Query: 329 SCQDLIGKKSPSGDVIRTDLD--FVNGLLEIEKVAVVQGSSFGHGP 372
               L  K   + +  +T  D  +   LL    + VV GS FG  P
Sbjct: 454 -RIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVP 498


>gnl|CDD|131432 TIGR02379, ECA_wecE, TDP-4-keto-6-deoxy-D-glucose transaminase.
           This family consists of TDP-4-keto-6-deoxy-D-glucose
           transaminases, the WecE (formerly RffA) protein of
           enterobacterial common antigen (ECA) biosynthesis, from
           enterobacteria. It also includes closely matching
           sequence from species not expected to make ECA, but
           which contain other genes for the biosynthesis of
           TDP-4-keto-6-deoxy-D-Glc, an intermediate in the
           biosynthesis of other compounds as well and the
           substrate of WecA. This family belongs to the
           DegT/DnrJ/EryC1/StrS aminotransferase family
           (pfam01041).
          Length = 376

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 107 ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK 166
           AL+  +  GDEV++P   +VS  +   L G   VFVD +  D   +    +E AIT +TK
Sbjct: 63  ALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRP-DTMNIDETLIESAITHRTK 121

Query: 167 WLFLNSPSNPSGVVYSQNRLRALAD 191
            +    P + +GV    + + ALA+
Sbjct: 122 AI---VPVHYAGVACDMDTIMALAN 143


>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated.
          Length = 433

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 79/313 (25%), Positives = 129/313 (41%), Gaps = 53/313 (16%)

Query: 45  MPENVKYAVVR-AMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV 103
           +P+ +K  V    M+     Y    G+   RE + E   +      T D II        
Sbjct: 49  IPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDII-------- 100

Query: 104 IFNAL---MATV--NMGDE--VLIPRPYWVSYPDM----VALCGGIPVFVDTQQDDNFQV 152
            FN L   +A +   +  E  V+ P P   +Y        A  G  PV      ++N+  
Sbjct: 101 FFNGLGDAIAKIYGLLRREARVIGPSP---AYSTHSSAEAAHAGYPPVTYRLDPENNWYP 157

Query: 153 SPEKLEQAITPKTKW-------LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDD 205
             + LE     K K+       L +N P NP+G VY +  LR + D+  R   + II D+
Sbjct: 158 DLDDLEN----KVKYNPSIAGILLIN-PDNPTGAVYPKEILREIVDI-AREYDLFIICDE 211

Query: 206 IYEHIVY---RNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG----YAAGALSLI 258
           IY +IVY   +    S ++   P +  +     G+SK     G R G    Y A    + 
Sbjct: 212 IYNNIVYNGKKTVPLSEVIGDVPGIALK-----GISKELPWPGSRCGWIEVYNADKDEVF 266

Query: 259 KSMI-VLQGQQTSGACS--IAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVP 313
           K  I  +   +    CS  + Q A    ++ P  ++++    K +E R ++   +L+ VP
Sbjct: 267 KKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVP 326

Query: 314 GIRYMIPDGAFYL 326
           G++    +GAFY+
Sbjct: 327 GLKVNRTNGAFYM 339


>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
          Length = 311

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 23/148 (15%)

Query: 115 GDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPS 174
             +V+IPR  +  Y  +          +    +D     PEKLE+ +   +  +F  +P+
Sbjct: 77  DRKVIIPRHTYGEYERVARFFAAR---IIKGPND-----PEKLEELVERNS-VVFFCNPN 127

Query: 175 NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIV--YRNCQFSNIVNVEPSLYERTL 232
           NP G  Y+   L+ L D  V + +  +I D+ +   V    + +  NI+ +      RT 
Sbjct: 128 NPDGKFYNFKELKPLLDA-VEDRNALLILDEAFIDFVKKPESPEGENIIKL------RTF 180

Query: 233 VVNGVSKAYAMTGLRIGYAAGALSLIKS 260
                +K+Y + G+R+GY  G     +S
Sbjct: 181 -----TKSYGLPGIRVGYVKGFEEAFRS 203


>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase.
          Length = 407

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 22/165 (13%)

Query: 64  YTAVAGISPLREAIVEKF-RRDNDLHYTSD--QIIVGTGAKHVIFNALMATV-NMGDEVL 119
           Y+   G+  +R+ + E   RRD    Y SD   I +  GA   +   L A +    D VL
Sbjct: 103 YSDSRGLPGVRKEVAEFIERRDG---YPSDPELIFLTDGASKGVMQILNAVIRGEKDGVL 159

Query: 120 IPRPYWVSYPDMVALCGG--IPVFVDTQQDDNFQVSPEKLEQA--------ITPKTKWLF 169
           +P P +  Y   ++L GG  +P +++  + +N+ +    L Q+        IT +   + 
Sbjct: 160 VPVPQYPLYSATISLLGGTLVPYYLE--ESENWGLDVNNLRQSVAQARSKGITVRA-MVI 216

Query: 170 LNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN 214
           +N P NP+G   S+  LR +     +   V ++ D++Y+  +Y++
Sbjct: 217 IN-PGNPTGQCLSEANLREILKFCYQERLV-LLGDEVYQQNIYQD 259


>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional.
          Length = 356

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 29/105 (27%), Positives = 61/105 (58%), Gaps = 6/105 (5%)

Query: 146 QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDD 205
           + D +Q++ + + +A+TP    LFL +P+NP+G++  +  L+A+A+   ++ ++ +I D+
Sbjct: 125 EADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAER-CKSLNIALILDE 182

Query: 206 IYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY 250
            +   +     F   +   P L+    V+  ++K YA+ GLR+GY
Sbjct: 183 AFIDFIPDETGFIPQLADNPHLW----VLRSLTKFYAIPGLRLGY 223


>gnl|CDD|179878 PRK04781, PRK04781, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 364

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 31/250 (12%)

Query: 90  TSDQIIVGTGAKHVIFNALMATVNMG-DEVLIPRPYWVSYPDMVALCG---GIPV----F 141
             +Q+++G G+   I   + A    G D VL+  P +     M A+C      P+     
Sbjct: 75  APEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVF----GMYAVCARLQNAPLVEVPL 130

Query: 142 VDTQQDDNFQVS-PEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVH 200
           VD    D F    P  +  A+    K +FL SPSNP+G   + +++      L     V 
Sbjct: 131 VDGA--DGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALV- 187

Query: 201 IISDDIYEHIVYRNCQFSNIVNVEPSL--YERTLVVNGVSKAYAMTGLRIGYAAGALSLI 258
            + D+ Y        +FS++ +    L  Y+   V+  +SKA+A+   RIG       LI
Sbjct: 188 -VVDEAY-------GEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELI 239

Query: 259 KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYR--RDLCVAQLQGVPGIR 316
             +   Q          A   A +AL+      V  R++ E R  R+   A L  +PG+R
Sbjct: 240 AVLRRCQAPYPVPTPCAA--LAEQALS-APALAVTARRVAEVRAERERLHAALAQLPGVR 296

Query: 317 YMIPDGAFYL 326
            + P    +L
Sbjct: 297 RVYPSQGNFL 306


>gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ;
           Provisional.
          Length = 431

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 24/123 (19%)

Query: 99  GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCG--GIPVFVDTQQDDNFQVSPEK 156
           GA   I   L A +  GD V +  P ++S  +M+   G    PV VD +      + PEK
Sbjct: 149 GAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-----MQPEK 203

Query: 157 LEQA---------ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY 207
           LE+A         +TP+          NP+G   S  R  AL ++L R P V +I DD +
Sbjct: 204 LERALAQGARAVILTPRAH--------NPTGCSLSARRAAALRNLLARYPQVLVIIDDHF 255

Query: 208 EHI 210
             +
Sbjct: 256 ALL 258


>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
          Length = 366

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 7/38 (18%)

Query: 139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176
            V+V+T        S + +EQAITP TK +F+ +P+NP
Sbjct: 118 FVYVNTA-------SLKAIEQAITPNTKAIFIETPTNP 148


>gnl|CDD|180050 PRK05387, PRK05387, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 353

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 35/196 (17%)

Query: 73  LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132
           LR+AI   +          +Q+ VG G+  V+ +A +A  N    +L P    ++Y    
Sbjct: 65  LRQAIAAYY------GLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPD---ITYSFYP 115

Query: 133 ALCG--GIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALA 190
              G  GIP + +   DD+F +  E     + P    +F N P+ P+G+      L  + 
Sbjct: 116 VYAGLYGIP-YEEIPLDDDFSIDVEDY---LRPNGGIIFPN-PNAPTGIALP---LAEIE 167

Query: 191 DVLVRNPHVHIISDDIY-----EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG 245
            +L  NP   ++ D+ Y     E  +        +++  P+L    LVV   SK+ ++ G
Sbjct: 168 RILAANPDSVVVIDEAYVDFGGESAI-------PLIDRYPNL----LVVQTFSKSRSLAG 216

Query: 246 LRIGYAAGALSLIKSM 261
           LR+G+A G   LI+++
Sbjct: 217 LRVGFAIGHPELIEAL 232


>gnl|CDD|180956 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated.
          Length = 360

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 39/185 (21%), Positives = 79/185 (42%), Gaps = 20/185 (10%)

Query: 71  SPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD 130
             LR A+ +  +         + I+ G GA  ++  A    +     V +  P +  Y  
Sbjct: 60  RELRLALAQHHQLP------PEWILPGNGAAELLTWA-GRELAQLRAVYLITPAFGDYRR 112

Query: 131 MVALCGG----IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRL 186
            +   G     +P+ +D Q      +  + L   +TP    L LN+P NP+G ++S+  +
Sbjct: 113 ALRAFGATVKELPLPLD-QPSPGLTLRLQTLPPQLTPNDG-LLLNNPHNPTGKLWSREAI 170

Query: 187 RALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL 246
             L +         ++ D+ +   +  + + S I  +    Y   +++  ++K Y++ GL
Sbjct: 171 LPLLEQFAL-----VVVDEAFMDFLPPDAEQSLIPCLAE--YPNLIILRSLTKFYSLPGL 223

Query: 247 RIGYA 251
           R+GYA
Sbjct: 224 RLGYA 228


>gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 369

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ 216
           L+ A       ++L +P NP G  +    + A  + L       ++ D+ Y       C+
Sbjct: 148 LDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEAL--PETTLLVLDEAY-------CE 198

Query: 217 F---SNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGAC 273
                    ++       + +   SKAY + G R+GYA GA   IK+   ++     G  
Sbjct: 199 TAPAGAAPPIDTDD-PNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNH--FGMN 255

Query: 274 SIAQWAAVEAL 284
            IAQ AA+ AL
Sbjct: 256 RIAQAAALAAL 266


>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine
           aminocarboxypropyltransferase; Validated.
          Length = 427

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 24/116 (20%)

Query: 97  GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGG-IPVFVDTQQDDNFQV--- 152
           G  A+ ++F+ L+     GDE +  R           L GG I  F    +   +QV   
Sbjct: 87  GHAAQFLVFHTLLQP---GDEFIAAR----------KLYGGSINQFGHAFKSFGWQVRWA 133

Query: 153 ---SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDD 205
               P   E+AITP+TK +F+ S +NP G V     + A+A+V      + +I D+
Sbjct: 134 DADDPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEV-AHRAGLPLIVDN 185


>gnl|CDD|179558 PRK03317, PRK03317, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 368

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 24/123 (19%)

Query: 141 FVDTQQDDNFQVSPEKLEQAIT---PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNP 197
           +V+  +  +F +  +    AI    P    +FL SP+NP+G     + + A+ D     P
Sbjct: 136 WVEGPRAADFTLDVDAAVAAIAEHRPDV--VFLTSPNNPTGTALPLDDVEAILDAA---P 190

Query: 198 HVHIISDDIYEHIVYRNCQFSNIVNVEPSL------YERTLVVNGVSKAYAMTGLRIGYA 251
            + ++ D+ Y        +F    +  PS       Y R +V   +SKA+A  G R+GY 
Sbjct: 191 GIVVV-DEAYA-------EFRR--SGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL 240

Query: 252 AGA 254
           A A
Sbjct: 241 AAA 243


>gnl|CDD|185305 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH;
           Provisional.
          Length = 438

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 136 GGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFL 170
           G +PVFVD +    + +    LE A++PKTK + +
Sbjct: 132 GLVPVFVDVELP-TYNIDASLLEAAVSPKTKAIMI 165


>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.
          Length = 390

 Score = 36.9 bits (86), Expect = 0.011
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 20/96 (20%)

Query: 104 IFNALMATVNMGDEVLIPRPYWVSYPDMVALCG------GIPV-FVDTQQDDNFQVSPEK 156
           I   +MA +  GD V+  R  + S    V+L        GI   FVD           + 
Sbjct: 89  ILAVVMALLQAGDHVVSSRSLFGS---TVSLFEKIFARFGIETTFVD-------LTDLDA 138

Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192
              A+ P TK  FL +PSNP   +     + ALA++
Sbjct: 139 WRAAVRPNTKLFFLETPSNPLTELAD---IAALAEI 171


>gnl|CDD|130392 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase.  This
           model describes O-succinylhomoserine sulfhydrylase, one
           of several related pyridoxal phosphate-dependent enzymes
           of cysteine and methionine metabolism. This enzyme is
           part of an alternative pathway of homocysteine
           biosynthesis, a step in methionine biosynthesis.
          Length = 380

 Score = 36.4 bits (84), Expect = 0.012
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 20/96 (20%)

Query: 104 IFNALMATVNMGDEVLIPRPYWVSYPDMVALCG------GIPV-FVDTQQDDNFQVSPEK 156
           I  ALM  +  GD V+  R  + S    V          GI V FVD    D        
Sbjct: 82  IQAALMTLLQAGDHVVASRSLFGS---TVGFISEILPRFGIEVSFVDP--TD-----LNA 131

Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192
            E A+ P TK +F+ +PSNP G +     + ALA++
Sbjct: 132 WEAAVKPNTKLVFVETPSNPLGELVD---IAALAEL 164


>gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase;
           Validated.
          Length = 409

 Score = 36.0 bits (84), Expect = 0.018
 Identities = 88/365 (24%), Positives = 128/365 (35%), Gaps = 83/365 (22%)

Query: 73  LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132
           LRE I E   +      ++D+I +  GAK    N ++      + + +  P +  Y D  
Sbjct: 81  LREKIAENDYQARGCDISADEIFISDGAKCDTGN-ILDIFGPDNTIAVTDPVYPVYVDTN 139

Query: 133 ALCGGIPVFVDTQQDDNFQVSPEKLEQAITP-----KTKWLFLNSPSNPSGVVYSQNRLR 187
            + G      +  +       P   E    P     K   ++L  P+NP+G V ++ +L+
Sbjct: 140 VMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLK 199

Query: 188 ALADVLVRNPHVHIISDDIYE---------HIVY-----RNCQFSNIVNVEPSLYERTLV 233
           A  D    N  + I+ D  YE         H +Y     R C       +E         
Sbjct: 200 AWVDYAKENGSL-ILFDAAYEAFISDPSLPHSIYEIEGARECA------IE--------- 243

Query: 234 VNGVSKAYAMTGLRIGY------------AAGALSLIKSMIVLQGQQTSGACSIAQWAAV 281
               SK    TG R  Y                +SL       Q  + +G   I Q AA 
Sbjct: 244 FRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAA- 302

Query: 282 EALNGPQ---------DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQD 332
           EA+  P+         D+ + N KI   R  L  A  +   G        A Y       
Sbjct: 303 EAVYSPEGKAQIKELIDYYMENAKII--REGLESAGFEVYGG------VNAPY------- 347

Query: 333 LIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS----IRISYAVSDAILEEA 388
            I  K+P G    +  DF + LL+   V    GS F  GPS     R+S   S   + EA
Sbjct: 348 -IWVKTPDG---MSSWDFFDKLLQEANVVGTPGSGF--GPSGEGYFRLSAFGSRENVLEA 401

Query: 389 CVRIK 393
             RIK
Sbjct: 402 MERIK 406


>gnl|CDD|181165 PRK07908, PRK07908, hypothetical protein; Provisional.
          Length = 349

 Score = 35.7 bits (83), Expect = 0.019
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 23/121 (19%)

Query: 173 PSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEP-SLYERT 231
           P+NP+ V++   +L AL     R P   ++ D+           F++ V  EP SL    
Sbjct: 148 PTNPTSVLHPAEQLLAL-----RRPGRILVVDE----------AFADAVPGEPESLAGDD 192

Query: 232 ----LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP 287
               LV+  ++K +++ GLR+GYA GA  ++     L   +        Q  A+ A   P
Sbjct: 193 LPGVLVLRSLTKTWSLAGLRVGYALGAPDVLAR---LTRGRAHWPVGTLQLEAIAACCAP 249

Query: 288 Q 288
           +
Sbjct: 250 R 250


>gnl|CDD|181321 PRK08248, PRK08248, O-acetylhomoserine
           aminocarboxypropyltransferase; Validated.
          Length = 431

 Score = 34.8 bits (80), Expect = 0.035
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 12/72 (16%)

Query: 137 GIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVR 195
           GI V FVD          PE  E AIT KTK LF  +  NP G V     + A+A +   
Sbjct: 128 GITVKFVDPS-------DPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHE 177

Query: 196 NPHVHIISDDIY 207
           +  + +I D+ +
Sbjct: 178 H-GIPLIVDNTF 188


>gnl|CDD|162303 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic.
           This model represents cystathionine beta-lyase
           (alternate name: beta-cystathionase), one of several
           pyridoxal-dependent enzymes of cysteine, methionine, and
           homocysteine metabolism. This enzyme is involved in the
           biosynthesis of Met from Cys.
          Length = 378

 Score = 34.8 bits (80), Expect = 0.039
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 7/41 (17%)

Query: 136 GGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176
           G + V VDT          +K++ A+ PKTK + L SP+NP
Sbjct: 110 GVVVVHVDTT-------DLDKVKAALGPKTKLVLLESPTNP 143


>gnl|CDD|185584 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional.
          Length = 404

 Score = 34.9 bits (81), Expect = 0.042
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 13/164 (7%)

Query: 47  ENVKYAVVRAMERGETK-YTAVAGISPLREAIV-----EKFRRDNDLHYTSDQIIVGTGA 100
           E+V+ A     E+   K Y  + G+    EA       E      +    + Q + GTGA
Sbjct: 50  ESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGA 109

Query: 101 KHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPV-----FVDTQQDDNFQVSPE 155
             + F  L   +  G  V +  P W ++ ++     G+ V     +    +  +F    E
Sbjct: 110 LRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK-SAGLNVKEYRYYDPKTKGLDFDGMLE 168

Query: 156 KLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHV 199
            L  A    +  L      NP+GV  ++ + + +ADV+ R   +
Sbjct: 169 DLRTA-PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLI 211


>gnl|CDD|162358 TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent
           enzyme.  This model describes a protein related to a
           number of pyridoxal phosphate-dependent enzymes, and in
           particular to selenocysteine synthase (SelA), which
           converts Ser to selenocysteine on its tRNA. While
           resembling SelA, this protein is found only in species
           that have a better candidate SelA or else lack the other
           genes (selB, selC, and selD) required for selenocysteine
           incorporation.
          Length = 363

 Score = 34.3 bits (79), Expect = 0.054
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 108 LMATVNMGDEVLIPRPYWVSY----PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP 163
           L  +    +EV++P+ + V Y      MV L GG  V          + S E+LE AIT 
Sbjct: 92  LHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYAN----ECSAEQLEAAITE 147

Query: 164 KT 165
           KT
Sbjct: 148 KT 149


>gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional.
          Length = 370

 Score = 34.2 bits (79), Expect = 0.055
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 38/134 (28%)

Query: 160 AITPKTKWLFLNSPSNPSGVVYSQNRLR-ALAD------VLVRNPHVHIISDDIYEHIVY 212
           A  P    +++ +P+NP+G V  +  +   LA+      +LV         D+ Y H   
Sbjct: 161 AADPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLV---------DEAYIH--- 208

Query: 213 RNCQFSNIVNVEPSLYERT------LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQG 266
               FS+     PS+ +        +V+   SK Y M G+R+G AA    L+  +    G
Sbjct: 209 ----FSD----APSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKL-ARFG 259

Query: 267 QQ----TSGACSIA 276
                  + A  +A
Sbjct: 260 HNPLPVPAAAAGLA 273


>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional.
          Length = 377

 Score = 34.3 bits (79), Expect = 0.060
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 107 ALMATVNMGDEVLIPRP-YWVSYPDMVALCG--GIPV-FVDTQQDDNFQVSPEKLEQAIT 162
           A+M   + GD V++    Y  +Y  M  +    GI   FVDT        + E++E+AI 
Sbjct: 80  AVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS-------NLEEVEEAIR 132

Query: 163 PKTKWLFLNSPSNP 176
           P TK +++ +P+NP
Sbjct: 133 PNTKAIYVETPTNP 146


>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine
           beta-lyase; Validated.
          Length = 380

 Score = 32.9 bits (75), Expect = 0.13
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 155 EKLEQAITPKTKWLFLNSPSNP 176
            ++++AI P TK L+L +PSNP
Sbjct: 125 SQIKKAIKPNTKALYLETPSNP 146


>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed.
          Length = 398

 Score = 32.4 bits (74), Expect = 0.21
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 155 EKLEQAITPKTKWLFLNSPSNPS 177
           +  E+A+ P TK  FL SP+NP+
Sbjct: 141 DNWEKAVRPNTKVFFLESPTNPT 163


>gnl|CDD|178277 PLN02672, PLN02672, methionine S-methyltransferase.
          Length = 1082

 Score = 32.4 bits (74), Expect = 0.23
 Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 144 TQQDDNFQVSPEKLEQAITPKTK-WLFLNSPS-NPSGVVYSQNRLRALADV 192
           T+  D F+++ + L   +    K W++++ P+ NP+G++YS + +  +  V
Sbjct: 807 TKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSV 857


>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase.  This model
           describes a distinct clade of the Cys/Met metabolism
           pyridoxal phosphate-dependent enzyme superfamily.
           Members include examples of OAH/OAS sulfhydrylase, an
           enzyme with activity both as O-acetylhomoserine (OAH)
           sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
           sulphydrylase (EC 2.5.1.47). An alternate name for OAH
           sulfhydrylase is homocysteine synthase. This model is
           designated subfamily because it may or may not have both
           activities.
          Length = 418

 Score = 32.3 bits (74), Expect = 0.25
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 8/41 (19%)

Query: 137 GIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176
           GI V FVD   DD     PE+ E+AI   TK +F  +  NP
Sbjct: 121 GIEVRFVD--PDD-----PEEFEKAIDENTKAVFAETIGNP 154


>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
           This model describes a subfamily of probable pyridoxal
           phosphate-dependent enzymes in the aminotransferase
           class V family. Related families contain members active
           as cysteine desulfurases, selenocysteine lyases, or
           both. The members of this family form a distinct clade
           and all are shorter at the N-terminus. The function of
           this subfamily is unknown.
          Length = 376

 Score = 30.8 bits (70), Expect = 0.62
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 152 VSPEKLEQAITPKTKWLFLNSPSNPSGVV 180
           +SPE++++AI   TK + ++  SN +G +
Sbjct: 125 ISPERIKRAIKTNTKLIVVSHASNVTGTI 153


>gnl|CDD|179321 PRK01688, PRK01688, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 351

 Score = 30.3 bits (69), Expect = 0.84
 Identities = 27/103 (26%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 148 DNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY 207
           DN+Q+    +   +    K +++ SP+NP+G + +   LR L + L R   + +++D+ Y
Sbjct: 130 DNWQLDLPAIADNLD-GVKVVYVCSPNNPTGNLINPQDLRTLLE-LTRGKAI-VVADEAY 186

Query: 208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY 250
             I +  C  +++     + Y   +++  +SKA+A+ GLR G+
Sbjct: 187 --IEF--CPQASLAG-WLAEYPHLVILRTLSKAFALAGLRCGF 224


>gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 356

 Score = 30.2 bits (69), Expect = 0.94
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 30/174 (17%)

Query: 94  IIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVS 153
           +++G G+  +I    +A    G  VL P P +V Y  M A   G+  FV      +F + 
Sbjct: 84  VLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYR-MSAKLAGLE-FVGVPLTADFTLD 141

Query: 154 PEKLEQAI-TPKTKWLFLNSPSNPSGVVYSQNRLRAL---ADVLVRNPHVHIISDDIY-- 207
              +  AI   +   +FL  P+NP+G ++    +  +   A  LV       + D+ Y  
Sbjct: 142 LPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLV-------VVDEAYQP 194

Query: 208 ---EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI 258
              +  + R  +F N+           LV+  VSK   + GLR+GY AG  + I
Sbjct: 195 FAGDSWLPRLARFPNL-----------LVMRTVSK-LGLAGLRLGYLAGHPAWI 236


>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional.
          Length = 403

 Score = 30.2 bits (68), Expect = 0.99
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 154 PEKLEQAITPKTKWLFLNSPSNPS 177
           P  L+ AI+ KT+ ++  +P+NP+
Sbjct: 140 PAALKAAISDKTRMVYFETPANPN 163


>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 354

 Score = 30.0 bits (68), Expect = 1.1
 Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 10/104 (9%)

Query: 147 DDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI 206
             ++Q+  + +EQ      K +F+ +P+NP+G V  +  +  L ++    P   ++ D+ 
Sbjct: 132 TADYQLPLDYIEQL--DGAKLVFICNPNNPTGTVIDRADIEQLIEMT---PDAIVVVDEA 186

Query: 207 YEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY 250
           Y  I +  C   ++ ++  S Y   +V+  +SKA+A+ G R G+
Sbjct: 187 Y--IEF--CPEYSVADLLAS-YPNLVVLRTLSKAFALAGARCGF 225


>gnl|CDD|181754 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
          Length = 592

 Score = 29.8 bits (68), Expect = 1.2
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 243 MTGLRIGYAAGAL-SLIKS----MIVLQGQQTSGACSIAQWAAVEA 283
           M GL   YAA  L   +K      + L    TSG   +    AVEA
Sbjct: 176 MAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEA 221


>gnl|CDD|151645 pfam11203, DUF2984, Protein of unknown function (DUF2984).  Some
          members in this bacterial family of proteins are
          annotated as membrane proteins however this cannot be
          confirmed.
          Length = 97

 Score = 29.7 bits (67), Expect = 1.3
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 14 SATLVAAQRVRD-LRSKGIDVLCLTAGE 40
             + A +R+ D L  +GI    LTA E
Sbjct: 35 RTLVAATRRLADALAEQGIRARPLTADE 62


>gnl|CDD|181129 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional.
          Length = 388

 Score = 29.6 bits (67), Expect = 1.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 154 PEKLEQAITPKTKWLFLNSPSNP 176
            + +  AITP+TK +++ +P+NP
Sbjct: 136 LDAVRAAITPRTKLIWVETPTNP 158


>gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
           4-aminotransferase.  This family of enzymes are
           aminotransferases of the pfam01041 family involved in
           the biosynthesis of pseudaminic acid. They convert
           UDP-4-keto-6-deoxy-N-acetylglucosamine into
           UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
           acid has a role in surface polysaccharide in Pseudomonas
           as well as in the modification of flagellin in
           Campylobacter and Helicobacter species.
          Length = 380

 Score = 29.6 bits (67), Expect = 1.4
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 98  TGAKH-VIFNA---------LMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQD 147
            GAK+ V FN+         L   V  GD V      +V+  +    CG    FVD   D
Sbjct: 42  VGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPD 101

Query: 148 DNFQVSPEKLEQAIT 162
               +  + LE+ + 
Sbjct: 102 TG-NIDEDALEKKLA 115


>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional.
          Length = 388

 Score = 29.5 bits (66), Expect = 1.8
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 7/36 (19%)

Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176
           FVD       Q     L+ A+  K K + L +PSNP
Sbjct: 122 FVD-------QSDAAALDAALAKKPKLILLETPSNP 150


>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase.
           This family consists of O-succinylhomoserine
           (thiol)-lyase, one of three different enzymes designated
           cystathionine gamma-synthase and involved in methionine
           biosynthesis. In all three cases, sulfur is added by
           transsulfuration from Cys to yield cystathionine rather
           than by a sulfhydrylation step that uses H2S directly
           and bypasses cystathionine.
          Length = 382

 Score = 29.0 bits (65), Expect = 2.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 7/36 (19%)

Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176
           FVD  Q D      + L  A+  K K + + +PSNP
Sbjct: 120 FVD--QGDE-----QALRAALAQKPKLVLIETPSNP 148


>gnl|CDD|181128 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase;
           Provisional.
          Length = 403

 Score = 28.9 bits (65), Expect = 2.5
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 11/77 (14%)

Query: 104 IFNALMATVNMGDEVLIPRPYW----VSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ 159
           +F AL A +  GD ++  R  +    V   +++   G   VFVD +          + E+
Sbjct: 98  VFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGED-------LSQWEE 150

Query: 160 AITPKTKWLFLNSPSNP 176
           A++  T+ +F  +PSNP
Sbjct: 151 ALSVPTQAVFFETPSNP 167


>gnl|CDD|150909 pfam10312, Cactin_mid, Conserved mid region of cactin.  This is
          the conserved middle region of a family of proteins
          referred to as cactins. The region contains two of
          three predicted coiled-coil domains. Most members of
          this family have a CactinC_cactus pfam09732 domain at
          the C-terminal end. Upstream of Mid_cactin in
          Drosophila members are a serine-rich region, some
          non-typical RD motifs and three predicted bipartite
          nuclear localisation signals, none of which are
          well-conserved. Cactin associates with IkappaB-cactus
          as one of the intracellular members of the Rel
          (NF-kappaB) pathway which is conserved in invertebrates
          and vertebrates. In mammals, this pathway controls the
          activities of the immune and inflammatory response
          genes as well as viral genes, and is critical for cell
          growth and survival. In Drosophila, the Rel pathway
          functions in the innate cellular and humoral immune
          response, in muscle development, and in the
          establishment of dorsal-ventral polarity in the early
          embryo.
          Length = 190

 Score = 28.4 bits (64), Expect = 3.3
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 9/49 (18%)

Query: 22 RVRDLRSKGIDVLCLTA----GEPDFDMPENVKYAV-----VRAMERGE 61
          R+++ R+K ID+L         E D +   +  Y V     V  +E  E
Sbjct: 31 RIKEGRAKPIDLLARNLRFIDPEKDVEFDLHEPYTVLEGLTVDELEELE 79


>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
          Length = 702

 Score = 28.4 bits (63), Expect = 3.6
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 5/24 (20%)

Query: 113 NMGDEVLIPRPYWV-----SYPDM 131
           N+GD+V IP P+WV     S PD+
Sbjct: 351 NVGDDVCIPLPHWVAEIGRSNPDI 374


>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional.
          Length = 386

 Score = 28.3 bits (63), Expect = 3.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 153 SPEKLEQAITPKTKWLFLNSPSNPS 177
           +   +E  I P TK +F+ +P NP+
Sbjct: 135 TEADIENKIRPNTKLIFVETPINPT 159


>gnl|CDD|181130 PRK07812, PRK07812, O-acetylhomoserine
           aminocarboxypropyltransferase; Validated.
          Length = 436

 Score = 28.2 bits (63), Expect = 4.1
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 137 GIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192
           GI V FV+   D       +    A+ P TK  F  + SNP   V     +  +A+V
Sbjct: 133 GIEVSFVEDPDD------LDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEV 180


>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase.
          Length = 464

 Score = 28.1 bits (62), Expect = 4.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 155 EKLEQAITPKTKWLFLNSPSNP 176
           +++  AI P+TK ++L SP+NP
Sbjct: 208 DEVAAAIGPQTKLVWLESPTNP 229


>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
          Length = 265

 Score = 27.5 bits (61), Expect = 5.8
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 302 RDLCVA--QLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL----- 354
           R+L +A  Q+Q    +R+++  G    + +  DL   +  +     T+LD    L     
Sbjct: 36  RELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMY 95

Query: 355 ----LEIEKVAVVQGSSFG 369
               L+I  +AVVQG++FG
Sbjct: 96  NLYRLKIPTLAVVQGAAFG 114


>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA.  This model
           describes DndA, a protein related to IscS and part of a
           larger family of cysteine desulfurases. It is encoded,
           typically, divergently from a conserved, sparsely
           distributed operon for sulfur modification of DNA. This
           modification system is designated dnd, after the
           phenotype of DNA degradation during electrophoresis. The
           system is sporadically distributed in bacteria, much
           like some restriction enzyme operons. DndB is described
           as a putative ATPase.
          Length = 353

 Score = 27.5 bits (61), Expect = 5.8
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 152 VSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNP 197
           +  ++L  AI P T  + +   +N +G +     +R +A+VL  + 
Sbjct: 126 IDVDELADAIRPDTLLVSIMHVNNETGSI---QPIREIAEVLEAHE 168


>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase.  This model
           describes a methionine gamma-lyase subset of a family of
           PLP-dependent trans-sulfuration enzymes. The member from
           the parasite Trichomonas vaginalis is described as
           catalyzing alpha gamma- and alpha-beta eliminations and
           gamma-replacement reactions on methionine, cysteine, and
           some derivatives. Likewise, the enzyme from Pseudomonas
           degrades cysteine as well as methionine.
          Length = 391

 Score = 27.5 bits (61), Expect = 6.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 153 SPEKLEQAITPKTKWLFLNSPSNPS 177
            PE+++  I   TK ++  +P+NP+
Sbjct: 133 IPEEVKAHIKDNTKIVYFETPANPT 157


>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.
          Length = 386

 Score = 27.6 bits (61), Expect = 6.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 7/36 (19%)

Query: 141 FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176
           FVD       Q   + L  A+  K K + + SPSNP
Sbjct: 121 FVD-------QGDEQALRAALAEKPKLVLVESPSNP 149


>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine
           aminocarboxypropyltransferase; Validated.
          Length = 425

 Score = 27.6 bits (61), Expect = 6.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVR 195
           LE  I  +TK +F  S  NP+G +     ++ALAD   R
Sbjct: 136 LEALIDERTKAVFCESIGNPAGNIID---IQALADAAHR 171


>gnl|CDD|182617 PRK10649, PRK10649, hypothetical protein; Provisional.
          Length = 577

 Score = 27.4 bits (61), Expect = 7.0
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 118 VLIPRP--YWVSYPDMVALCGGIPVFVDT-QQDDNFQVSPEKLEQAITPKTKWLFLNS 172
           V IP P  Y VS+  +  L    P+ ++T  +   F+ + +KL   + P   W FL  
Sbjct: 145 VYIPWPWRYVVSFALLYGLILH-PIAMNTFIKHKPFEKTLDKLASRMEPAAPWQFLTG 201


>gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
          Length = 1485

 Score = 27.1 bits (61), Expect = 7.3
 Identities = 26/98 (26%), Positives = 29/98 (29%), Gaps = 28/98 (28%)

Query: 70  ISPLREAIVEKF-----RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPY 124
           I PLREA V        R  N    T         A  VIF +          VL     
Sbjct: 521 IDPLREAHVMSLATCIGREMNVFCETEGH------AHRVIFKS---------PVL----- 560

Query: 125 WVSYPDMVALCG-GIPVFVDTQQDDNFQVSPEKLEQAI 161
             SY D   L       +     D N+      LE AI
Sbjct: 561 --SYSDFKQLTTLDEEHYRADTLDLNYDPEETGLEAAI 596


>gnl|CDD|181218 PRK08064, PRK08064, cystathionine beta-lyase; Provisional.
          Length = 390

 Score = 27.0 bits (60), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 155 EKLEQAITPKTKWLFLNSPSNP 176
           E++ Q I P TK  ++ +PSNP
Sbjct: 129 EEVAQNIKPNTKLFYVETPSNP 150


>gnl|CDD|148302 pfam06616, BsuBI_PstI_RE, BsuBI/PstI restriction endonuclease
           C-terminus.  This family represents the C-terminus of
           bacterial enzymes similar to type II restriction
           endonucleases BsuBI and PstI (EC:3.1.21.4). The enzymes
           of the BsuBI restriction/modification (R/M) system
           recognize the target sequence 5'CTGCAG and are
           functionally identical with those of the PstI R/M
           system.
          Length = 306

 Score = 26.9 bits (60), Expect = 9.8
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 50  KYAVVRAMER-------GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIV---GTG 99
            YA  RA +R       G+T   +    S L +A++E+F       +     ++    TG
Sbjct: 136 AYASARAQDRIPVTFPNGKTITLSPGPSSELIKAVIEEFAP----RFLPGPAVLYLGDTG 191

Query: 100 AKHVIFNA 107
            K V F+ 
Sbjct: 192 NKVVYFDD 199


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,742,328
Number of extensions: 448182
Number of successful extensions: 1334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 147
Length of query: 400
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 305
Effective length of database: 3,941,713
Effective search space: 1202222465
Effective search space used: 1202222465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)