BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780602|ref|YP_003065015.1| aspartate aminotransferase
[Candidatus Liberibacter asiaticus str. psy62]
(400 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 400
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG 60
MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG
Sbjct: 1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG 60
Query: 61 ETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLI 120
ETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLI
Sbjct: 61 ETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLI 120
Query: 121 PRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180
PRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV
Sbjct: 121 PRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180
Query: 181 YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA 240
YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA
Sbjct: 181 YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA 240
Query: 241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEY 300
YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEY
Sbjct: 241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEY 300
Query: 301 RRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKV 360
RRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKV
Sbjct: 301 RRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKV 360
Query: 361 AVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ 400
AVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ
Sbjct: 361 AVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ 400
>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 467
Score = 26.6 bits (57), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHV 103
LR+AI E+ RRD D+ +++ GA V
Sbjct: 146 LRDAIAEEMRRDKDVFIMGEEVAEYQGAYKV 176
>gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 15 ATLVAAQRVRDLRSKGID-VLCLTAGEPDFDMPENVKYAVV 54
AT + + + + GI+ V L G+ FD+PEN +++V
Sbjct: 123 ATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIV 163
>gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 366
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 219 NIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQW 278
+ + SLY V + A+ +G SL+K + L QQ S +I
Sbjct: 10 EVERIRSSLYNSIASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQVSARGAILNQ 69
Query: 279 AAVE---ALNGPQDFVVNNRKIFE 299
V+ ++ +DF + N+ IFE
Sbjct: 70 LKVDISGKISARKDF-IRNQLIFE 92
>gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 608
Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 67 VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMG 115
+ GI+ I+E F R H++S Q+ + VI L + G
Sbjct: 90 IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNG 138
>gi|254780548|ref|YP_003064961.1| translocation protein TolB [Candidatus Liberibacter asiaticus str.
psy62]
Length = 447
Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 200 HIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK 239
H ISDDIY+ I F++ + L+ VV+G+ K
Sbjct: 156 HTISDDIYQSITGEKGDFNSRI-----LFVSESVVSGIIK 190
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 298 FEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEI 357
F +RD+ A+ G+P +IP + S QD+ K+ SGD I + F++G+
Sbjct: 346 FADQRDMDFAKKYGLP----IIPIMKRSINHS-QDIEEGKAFSGDGIMINSSFLDGMTNT 400
Query: 358 EKVAVV 363
E + V
Sbjct: 401 EALQAV 406
>gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 155
Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 180 VYSQNRLRALADVLVRNP-HVHIISD----DIYE 208
VY + L A+ D++ RNP HV II DI+E
Sbjct: 28 VYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFE 61
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 23.1 bits (48), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 349 DFVNGLLEIEKVAVVQGSSFGHGP 372
D ++GL I+KV + S GH P
Sbjct: 690 DRIDGLEYIDKVVSINQSPIGHTP 713
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,496
Number of Sequences: 1233
Number of extensions: 10515
Number of successful extensions: 24
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 9
length of query: 400
length of database: 328,796
effective HSP length: 76
effective length of query: 324
effective length of database: 235,088
effective search space: 76168512
effective search space used: 76168512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)