HHsearch alignment for GI: 254780603 and conserved domain: COG0566
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=412.63 Aligned_cols=251 Identities=32% Similarity=0.478 Sum_probs=221.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHH--HHHCCCCEEEECHHHH
Q ss_conf 22376567776543112211128819998578899999789818999997378433543455--4326996999768998
Q gi|254780603|r 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTI 101 (282)
Q Consensus 24 ~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~~~~--~l~~~~~I~~v~~~~l 101 (282)
T Consensus 3 s~~n~~~~~~~~~------r~~~~~~~~~G~~~v~~al~~~~-~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l 75 (260)
T COG0566 3 SPANPRVKALKKL------RGRAGEFLIEGEHAVLEALASGP-KIVRILVTEGRLPRFEELLALAAAKGIPVYVVSEAIL 75 (260)
T ss_pred CCHHHHHHHHHHH------HCCCCCEEEECHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 7214566899986------30577089971899999996797-7069998434321378999988765992899688999
Q ss_pred HHHHCCCCCCCCCCEEEECCCCCCHHHCC---CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 77524777777442024115555401126---650688723432068899999998642001100136863200000134
Q gi|254780603|r 102 DKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178 (282)
Q Consensus 102 ~~i~~~~~~hqGi~a~~~~~~~~~l~~~~---~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~r 178 (282)
T Consensus 76 ~~~~~~~-~hqGi~a~~~~~~~~~~~~~~~~~~~~~~lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r 154 (260)
T COG0566 76 DKLSGTE-NHQGIVAVVKKRRYPLLDDLLDAEAQPLLLVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVIR 154 (260)
T ss_pred HHHHCCC-CCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHEE
T ss_conf 9875578-864057896355556524442024588699991787887124888759873898899889866774534325
Q ss_pred HHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCC
Q ss_conf 4433332110122232-211222222210000000123332211223689889997586789877999858939992789
Q gi|254780603|r 179 SASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 (282)
Q Consensus 179 as~Ga~~~l~~~~~~~-~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~ 257 (282)
T Consensus 155 ~s~Ga~~~vp~~~~~n~~~~~~~~~~~~G~~v~~t~~~~~~~~~~~~~~~~~aLvlG~Eg~Gls~~~~~~~D~~v~IPm~ 234 (260)
T COG0566 155 ASAGAAFHVPVIRVTNLARTLLELLKEAGFWVVATSLDGEVDLYETDLPKKTALVLGNEGEGLSRLLLEHADQLVRIPMA 234 (260)
T ss_pred ECCCCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCC
T ss_conf 41771005735888077999999999769489998588874311026778779998789888589999517847993589
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6874378999999999999876149
Q gi|254780603|r 258 GIIKALNVSNAAAVALYITQNHFAK 282 (282)
Q Consensus 258 ~~~~SLNvs~a~ai~l~~~~~~~~~ 282 (282)
T Consensus 235 G~v~SLNVsvAagI~Lye~~rq~~~ 259 (260)
T COG0566 235 GKVESLNVSVAAGILLYEARRQRRA 259 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9865108999999999999986445