HHsearch alignment for GI: 254780603 and conserved domain: COG0566

>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=412.63  Aligned_cols=251  Identities=32%  Similarity=0.478  Sum_probs=221.6

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHH--HHHCCCCEEEECHHHH
Q ss_conf             22376567776543112211128819998578899999789818999997378433543455--4326996999768998
Q gi|254780603|r   24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTI  101 (282)
Q Consensus        24 ~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~~~~--~l~~~~~I~~v~~~~l  101 (282)
T Consensus         3 s~~n~~~~~~~~~------r~~~~~~~~~G~~~v~~al~~~~-~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l   75 (260)
T COG0566           3 SPANPRVKALKKL------RGRAGEFLIEGEHAVLEALASGP-KIVRILVTEGRLPRFEELLALAAAKGIPVYVVSEAIL   75 (260)
T ss_pred             CCHHHHHHHHHHH------HCCCCCEEEECHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf             7214566899986------30577089971899999996797-7069998434321378999988765992899688999


Q ss_pred             HHHHCCCCCCCCCCEEEECCCCCCHHHCC---CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf             77524777777442024115555401126---650688723432068899999998642001100136863200000134
Q gi|254780603|r  102 DKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK  178 (282)
Q Consensus       102 ~~i~~~~~~hqGi~a~~~~~~~~~l~~~~---~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~r  178 (282)
T Consensus        76 ~~~~~~~-~hqGi~a~~~~~~~~~~~~~~~~~~~~~~lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r  154 (260)
T COG0566          76 DKLSGTE-NHQGIVAVVKKRRYPLLDDLLDAEAQPLLLVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVIR  154 (260)
T ss_pred             HHHHCCC-CCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHEE
T ss_conf             9875578-864057896355556524442024588699991787887124888759873898899889866774534325


Q ss_pred             HHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCC
Q ss_conf             4433332110122232-211222222210000000123332211223689889997586789877999858939992789
Q gi|254780603|r  179 SASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP  257 (282)
Q Consensus       179 as~Ga~~~l~~~~~~~-~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~  257 (282)
T Consensus       155 ~s~Ga~~~vp~~~~~n~~~~~~~~~~~~G~~v~~t~~~~~~~~~~~~~~~~~aLvlG~Eg~Gls~~~~~~~D~~v~IPm~  234 (260)
T COG0566         155 ASAGAAFHVPVIRVTNLARTLLELLKEAGFWVVATSLDGEVDLYETDLPKKTALVLGNEGEGLSRLLLEHADQLVRIPMA  234 (260)
T ss_pred             ECCCCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCC
T ss_conf             41771005735888077999999999769489998588874311026778779998789888589999517847993589


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             6874378999999999999876149
Q gi|254780603|r  258 GIIKALNVSNAAAVALYITQNHFAK  282 (282)
Q Consensus       258 ~~~~SLNvs~a~ai~l~~~~~~~~~  282 (282)
T Consensus       235 G~v~SLNVsvAagI~Lye~~rq~~~  259 (260)
T COG0566         235 GKVESLNVSVAAGILLYEARRQRRA  259 (260)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             9865108999999999999986445