HHsearch alignment for GI: 254780603 and conserved domain: PRK12703
>PRK12703 tRNA 2'-O-methylase; Reviewed.
Probab=95.96 E-value=0.014 Score=34.21 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC--
Q ss_conf 20688999999986420011001368632000-001344433332110122232211222222210000000123332--
Q gi|254780603|r 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-- 218 (282)
Q Consensus 142 ~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~-~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-- 218 (282)
T Consensus 13 RDkRITTHVaLtARAfGA~~il~~e~D~~v~etv~~V~~rwGG~F~ie-----~~~~w~~~~k~~~G~vVHLTMYG~~i~ 87 (339)
T PRK12703 13 RDKRITTHVALTARAFGASSILVDERDETLENTIKKVVDNFGGSFEIK-----TGIEWKSEFKKFHGIRVHLTMYGRPIE 87 (339)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE-----ECCCHHHHHHHCCCEEEEEECCCCCHH
T ss_conf 676212589899987168754436887678999999997349977997-----176799998735987999831688657
Q ss_pred -CCCCCCC-CCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -2112236-898899975867898779998589399927896874378999999999999
Q gi|254780603|r 219 -PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 (282)
Q Consensus 219 -~~~~~~~-~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~ 276 (282)
T Consensus 88 dvi~~Ir~~~k~ilVVVGaeK--VP~evYelADyNVaVgNQPHSE----VAALAIFLDRl 141 (339)
T PRK12703 88 DVIDEIRESGKDVMVLVGSEK--VPIEAYEIADYNVSVTNQPISE----VSALAIFLDRY 141 (339)
T ss_pred HHHHHHHHCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCHHH----HHHHHHHHHHH
T ss_conf 877776512897799975885--9989985356534327988089----99999999986