HHsearch alignment for GI: 254780603 and conserved domain: TIGR00050

>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1; InterPro: IPR004384 These proteins are part of the trmH (spoU) family of rRNA methylases. The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases . TrmH is a tRNA (guanosine-2'-O-)-methyltransferase (2.1.1.34 from EC), which specifically methylates guanosine-18 in various tRNAs using S-adenosyl-L-methionine.; GO: 0008173 RNA methyltransferase activity.
Probab=99.90  E-value=1.8e-23  Score=153.93  Aligned_cols=145  Identities=21%  Similarity=0.271  Sum_probs=121.0

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             06887234320688999999986420011001368632000001344433332110-12223221122222221000000
Q gi|254780603|r  133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISNLTDALQKMHSWGFQTIG  211 (282)
Q Consensus       133 ~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~-~~~~~~~~~~l~~~~~~~~~i~~  211 (282)
T Consensus         4 ~I~ivLVep~~~gNvG~~ARaMKnmGl~~L~Lv~p~~~~~~~eay~~A~~A~Di~~nA~vv~~L~Eal~sld~~--~~vg   81 (253)
T TIGR00050         4 NISIVLVEPKHSGNVGSIARAMKNMGLEELILVNPRVDILEEEAYALAAHAKDILENAKVVDDLDEALDSLDCD--LVVG   81 (253)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHCCCC--EEEE
T ss_conf             24788861799864469999987627001256466225568789998720278658754742679998731997--0786


Q ss_pred             CC-CCCC--CCC------------CCCCCCC--CEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             01-2333--221------------1223689--88999758678987799985893999278968743789999999999
Q gi|254780603|r  212 LS-SDSK--KPL------------EQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY  274 (282)
Q Consensus       212 ~~-~~~~--~~~------------~~~~~~~--~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~  274 (282)
T Consensus        82 TsGaRGGd~r~l~~~~~~P~el~~~~~~~~g~~~~A~vFGREd~GL~NEEL~~Ch~~v~iP~~~~YPslNL~~AV~Vi~Y  161 (253)
T TIGR00050        82 TSGARGGDSRNLQRPLLTPRELADKILAKKGWMKVAIVFGREDSGLTNEELEKCHVLVSIPTSEEYPSLNLSHAVAVILY  161 (253)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             26788875434467777836668764242067214788524688876688964781552257788741148999999999


Q ss_pred             HHHHH
Q ss_conf             99876
Q gi|254780603|r  275 ITQNH  279 (282)
Q Consensus       275 ~~~~~  279 (282)
T Consensus       162 eL~~~  166 (253)
T TIGR00050       162 ELRMA  166 (253)
T ss_pred             HHHHH
T ss_conf             99988