HHsearch alignment for GI: 254780603 and conserved domain: TIGR00185

>TIGR00185 rRNA_methyl_2 RNA methyltransferase, TrmH family, group 2; InterPro: IPR004440 The RNA methyltransferase, TrmH family, group 2 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=99.97  E-value=2.3e-31  Score=199.07  Aligned_cols=148  Identities=19%  Similarity=0.188  Sum_probs=135.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf             68872343206889999999864200110013686320000013444333321101222322112222222100000001
Q gi|254780603|r  134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS  213 (282)
Q Consensus       134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~  213 (282)
T Consensus         2 ~~iVLy~PeIP~NTGNI~R~Caat~~~LHLi~PlGF~~~DK~L~RAGLdyw~fv~~~~H~s~E~fle~~~~~~~nlf~lT   81 (161)
T TIGR00185         2 LNIVLYEPEIPPNTGNIVRTCAATGTRLHLIKPLGFELDDKRLKRAGLDYWEFVQLFYHKSWEEFLEAEKPQKGNLFLLT   81 (161)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHCCCCCEEEEEEE
T ss_conf             15774078897884112010111586245660578620781423147874452323562556888863389971688884


Q ss_pred             CCC--CCCCCCCCCCCCE--EEEECCCCCCCCHHHHHHC--CCEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             233--3221122368988--9997586789877999858--9399927896-87437899999999999987614
Q gi|254780603|r  214 SDS--KKPLEQEIKNDKI--ALILGAEGKGLRPKTQETA--TSMAHLHMPG-IIKALNVSNAAAVALYITQNHFA  281 (282)
Q Consensus       214 ~~~--~~~~~~~~~~~~~--~lv~G~E~~Gl~~~~~~~~--d~~v~Ip~~~-~~~SLNvs~a~ai~l~~~~~~~~  281 (282)
T Consensus        82 ~~G~~t~~~~~~~~~~~d~~yl~fG~ET~GLP~~~~~~~P~~~~~RiPm~~s~vRSlNLsn~va~~lYEa~rQ~~  156 (161)
T TIGR00185        82 KKGDKTPDHISVTYQDGDELYLVFGQETKGLPKSLLDNLPMEQKIRIPMTNSEVRSLNLSNSVAIVLYEALRQLG  156 (161)
T ss_pred             ECCCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             038877450466543786169983687755128998606321630325578884622468899999998787513