HHsearch alignment for GI: 254780603 and conserved domain: TIGR00185
>TIGR00185 rRNA_methyl_2 RNA methyltransferase, TrmH family, group 2; InterPro: IPR004440 The RNA methyltransferase, TrmH family, group 2 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=99.97 E-value=2.3e-31 Score=199.07 Aligned_cols=148 Identities=19% Similarity=0.188 Sum_probs=135.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 68872343206889999999864200110013686320000013444333321101222322112222222100000001
Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 (282)
Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~ 213 (282)
T Consensus 2 ~~iVLy~PeIP~NTGNI~R~Caat~~~LHLi~PlGF~~~DK~L~RAGLdyw~fv~~~~H~s~E~fle~~~~~~~nlf~lT 81 (161)
T TIGR00185 2 LNIVLYEPEIPPNTGNIVRTCAATGTRLHLIKPLGFELDDKRLKRAGLDYWEFVQLFYHKSWEEFLEAEKPQKGNLFLLT 81 (161)
T ss_pred EEEEEECCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHCCCCCEEEEEEE
T ss_conf 15774078897884112010111586245660578620781423147874452323562556888863389971688884
Q ss_pred CCC--CCCCCCCCCCCCE--EEEECCCCCCCCHHHHHHC--CCEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 233--3221122368988--9997586789877999858--9399927896-87437899999999999987614
Q gi|254780603|r 214 SDS--KKPLEQEIKNDKI--ALILGAEGKGLRPKTQETA--TSMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 214 ~~~--~~~~~~~~~~~~~--~lv~G~E~~Gl~~~~~~~~--d~~v~Ip~~~-~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
T Consensus 82 ~~G~~t~~~~~~~~~~~d~~yl~fG~ET~GLP~~~~~~~P~~~~~RiPm~~s~vRSlNLsn~va~~lYEa~rQ~~ 156 (161)
T TIGR00185 82 KKGDKTPDHISVTYQDGDELYLVFGQETKGLPKSLLDNLPMEQKIRIPMTNSEVRSLNLSNSVAIVLYEALRQLG 156 (161)
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 038877450466543786169983687755128998606321630325578884622468899999998787513