HHsearch alignment for GI: 254780603 and conserved domain: TIGR00186
>TIGR00186 rRNA_methyl_3 RNA methyltransferase, TrmH family, group 3; InterPro: IPR004441 The RNA methyltransferase, TrmH family, group 3 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=99.97 E-value=8.9e-33 Score=207.19 Aligned_cols=231 Identities=32% Similarity=0.527 Sum_probs=199.2
Q ss_pred EEEEEHHHHHHHHHCCCEEEEEEEECCCCCCC-C---CHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCCEEEEC----
Q ss_conf 99985788999997898189999973784335-4---345543269969997689987752477777744202411----
Q gi|254780603|r 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-L---DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP---- 120 (282)
Q Consensus 49 ~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~-~---~~~~~l~~~~~I~~v~~~~l~~i~~~~~~hqGi~a~~~~---- 120 (282)
T Consensus 3 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (271)
T TIGR00186 3 EYLYGVNAVLEALLNDPRRLSRLWILKLLLSGPKLKKLLELLKKKGVTIELVDRKKLDKLAKGG-NHQGVAAEVKPPKNK 81 (271)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCC-CCCCEEEEECCCCHH
T ss_conf 1011257889875055357788877653112024678888887406504651303455554022-000001211221012
Q ss_pred ---CCCCCHHH-------C------CC-CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ---55554011-------2------66-5068872343206889999999864200110013686320000013444333
Q gi|254780603|r 121 ---LLSPTLDA-------V------RN-SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183 (282)
Q Consensus 121 ---~~~~~l~~-------~------~~-~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga 183 (282)
T Consensus 82 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~dp~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (271)
T TIGR00186 82 NLKYLYLDLEDENIPHELLLKTAKSKKKNPFLLLLDEITDPHNLGAILRTAEALGADGVVLPKRRSAPLTSTVLKTSAGA 161 (271)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHH
T ss_conf 22333211343345245666665202445147886133472023467665544121102420101001001344433102
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC--CCCCCCCC-----------CEEEEECCCCCCCCHHHHHHCCC
Q ss_conf 321101222322112222222100000001233322--11223689-----------88999758678987799985893
Q gi|254780603|r 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKND-----------KIALILGAEGKGLRPKTQETATS 250 (282)
Q Consensus 184 ~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~-----------~~~lv~G~E~~Gl~~~~~~~~d~ 250 (282)
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~c~~~~~~~~~g~~~~g~~~~~~~~~d~ 241 (271)
T TIGR00186 162 LEYLPLARVTNLSRTLTKLKELGFWTLGTDLDGEDTPELYEKLLLKLHDLNGLCNELPLALVLGNEGEGLSRLLKKNCDF 241 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCE
T ss_conf 34300233222588999887627547861344201245666554333322212311132457637653213455530661
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999278968743789999999999998761
Q gi|254780603|r 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280 (282)
Q Consensus 251 ~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~ 280 (282)
T Consensus 242 ~~~~p~~~~~~~l~~~~~~g~~~~~~~~~~ 271 (271)
T TIGR00186 242 LIKIPLAGKVDSLNVSVAAGILLFEIKRQR 271 (271)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 676035666320024667787877665239