HHsearch alignment for GI: 254780603 and conserved domain: pfam01994
>pfam01994 Trm56 tRNA ribose 2'-O-methyltransferase, aTrm56. This family is an aTrm56 that catalyses the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot for AdoMet binding, and a unique C-terminal beta-hairpin.
Probab=93.29 E-value=0.096 Score=29.41 Aligned_cols=81 Identities=16% Similarity=0.041 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCC---CCCCCC-CCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHH
Q ss_conf 2232211222222210000000123332---211223-689889997586789877999858939992789687437899
Q gi|254780603|r 191 RISNLTDALQKMHSWGFQTIGLSSDSKK---PLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 (282)
Q Consensus 191 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~---~~~~~~-~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs 266 (282)
T Consensus 9 ~~~~~~~~ir~~k~~~G~vVHLTMYG~~i~~~i~~Ir~~~~~ilvVVGaeK--VP~evye~ADyNVaVgNQPHSE----V 82 (121)
T pfam01994 9 FGVNWRSYIREWKEKGGIVVHLTMYGENIDDVIPEIRESGKDILVVVGAEK--VPGEVYELADYNVAVGNQPHSE----V 82 (121)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCCHH----H
T ss_conf 767989999998763988999953688668877786503886799977873--8999984355415527887089----9
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780603|r 267 NAAAVALYITQ 277 (282)
Q Consensus 267 ~a~ai~l~~~~ 277 (282)
T Consensus 83 AALAiFLdrl~ 93 (121)
T pfam01994 83 AALAVFLDRLF 93 (121)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999861