HHsearch alignment for GI: 254780603 and conserved domain: pfam04452

>pfam04452 Methyltrans_RNA RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.
Probab=93.79  E-value=0.21  Score=27.47  Aligned_cols=135  Identities=21%  Similarity=0.343  Sum_probs=72.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCC------------HHHHHHHHHHH-HHHHC-CCCCCCCCC
Q ss_conf             68872343206889999999864200110--0136863200------------00013444333-32110-122232211
Q gi|254780603|r  134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSE------------SAVLAKSASGA-LEHIP-YIRISNLTD  197 (282)
Q Consensus       134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~------------~~~~~ras~Ga-~~~l~-~~~~~~~~~  197 (282)
T Consensus        62 ~i~l~~al~K~~~~~~il~k~tElGV~~i~p~~~ers~~k~~~~~~~~k~~R~~~i~~~A~eQs~r~~lP~I~~~~~l~~  141 (225)
T pfam04452        62 KITLAQALPKGDRLELILQKATELGVDRIVPLISERSVVKLDGKRADKKLERWQKIAIEAAEQSGRTRLPEVLPPISLKE  141 (225)
T ss_pred             EEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHH
T ss_conf             17999950072789999999986287657999840354544303466659999999999999719982877726689999


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCC---CCC---CCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHHHH
Q ss_conf             2222222100000001233322---112---236898899975867898779998589--39992789687437899999
Q gi|254780603|r  198 ALQKMHSWGFQTIGLSSDSKKP---LEQ---EIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAA  269 (282)
Q Consensus       198 ~l~~~~~~~~~i~~~~~~~~~~---~~~---~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~a~  269 (282)
T Consensus       142 ~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~g~~~v~LG~~I--LR~ETA~  216 (225)
T pfam04452       142 LLEELDDADK--LILHEEAAKSLGELSELLASLKGGKVLLIIGPEG-GFSPEEIELLKEAGFTPVSLGPRI--LRTETAA  216 (225)
T ss_pred             HHHHCCCCCE--EEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CCHHHHH
T ss_conf             9961866888--9992665544321012321035784589988988-999999999998899898479994--6078599


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780603|r  270 AVAL  273 (282)
Q Consensus       270 ai~l  273 (282)
T Consensus       217 i~al  220 (225)
T pfam04452       217 LAAL  220 (225)
T ss_pred             HHHH
T ss_conf             9999