HHsearch alignment for GI: 254780603 and conserved domain: pfam04452
>pfam04452 Methyltrans_RNA RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.
Probab=93.79 E-value=0.21 Score=27.47 Aligned_cols=135 Identities=21% Similarity=0.343 Sum_probs=72.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCC------------HHHHHHHHHHH-HHHHC-CCCCCCCCC
Q ss_conf 68872343206889999999864200110--0136863200------------00013444333-32110-122232211
Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSE------------SAVLAKSASGA-LEHIP-YIRISNLTD 197 (282)
Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~------------~~~~~ras~Ga-~~~l~-~~~~~~~~~ 197 (282)
T Consensus 62 ~i~l~~al~K~~~~~~il~k~tElGV~~i~p~~~ers~~k~~~~~~~~k~~R~~~i~~~A~eQs~r~~lP~I~~~~~l~~ 141 (225)
T pfam04452 62 KITLAQALPKGDRLELILQKATELGVDRIVPLISERSVVKLDGKRADKKLERWQKIAIEAAEQSGRTRLPEVLPPISLKE 141 (225)
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHH
T ss_conf 17999950072789999999986287657999840354544303466659999999999999719982877726689999
Q ss_pred CCCCCCCCCCHHHHCCCCCCCC---CCC---CCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHHHH
Q ss_conf 2222222100000001233322---112---236898899975867898779998589--39992789687437899999
Q gi|254780603|r 198 ALQKMHSWGFQTIGLSSDSKKP---LEQ---EIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAA 269 (282)
Q Consensus 198 ~l~~~~~~~~~i~~~~~~~~~~---~~~---~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~a~ 269 (282)
T Consensus 142 ~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~g~~~v~LG~~I--LR~ETA~ 216 (225)
T pfam04452 142 LLEELDDADK--LILHEEAAKSLGELSELLASLKGGKVLLIIGPEG-GFSPEEIELLKEAGFTPVSLGPRI--LRTETAA 216 (225)
T ss_pred HHHHCCCCCE--EEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CCHHHHH
T ss_conf 9961866888--9992665544321012321035784589988988-999999999998899898479994--6078599
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780603|r 270 AVAL 273 (282)
Q Consensus 270 ai~l 273 (282)
T Consensus 217 i~al 220 (225)
T pfam04452 217 LAAL 220 (225)
T ss_pred HHHH
T ss_conf 9999