HHsearch alignment of GI: 254780603 and MMDB domain: 2i6d_A_99-257

>2i6d_A (A:99-257) RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83}
Probab=100.00  E-value=1.3e-42  Score=263.16  Aligned_cols=149  Identities=25%  Similarity=0.323  Sum_probs=141.2

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             65068872343206889999999864200110013686320000013444333321101222322112222222100000
Q gi|254780603|r  131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI  210 (282)
Q Consensus       131 ~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~  210 (282)
                      ..+++++||+++||+|+|+|+|||++||++++++.+.+++++++++.|+|+|+++++|+.+++++.++++.+++.|++++
T Consensus         3 ~~~~~vvl~~~~~~~NiG~i~Rt~~a~G~~~i~l~~~~~~~~~~~~~r~a~ga~~~i~~~~~~~~~~~~~~~~~~~~~~~   82 (159)
T 2i6d_A            3 VEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASXGALARVQPTPLKNTVDTLAYFRRQGIPVY   82 (159)
T ss_dssp             CCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEECSCHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf             67769998500355559999844650111157774023333443555421111101022233321002234311575432


Q ss_pred             HCCCCCC--CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECC-----CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             0012333--221122368988999758678987799985893999278-----96874378999999999999876
Q gi|254780603|r  211 GLSSDSK--KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-----PGIIKALNVSNAAAVALYITQNH  279 (282)
Q Consensus       211 ~~~~~~~--~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~-----~~~~~SLNvs~a~ai~l~~~~~~  279 (282)
                      +++.++.  ..+.+..++++.+||||+|+.||++++++.||.+|+|||     .+.++|||||+|++|+|||++||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~l~~~d~~v~IP~~~~~m~g~~~SLNva~A~~I~lye~~rq  158 (159)
T 2i6d_A           83 GAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRR  158 (159)
T ss_dssp             EEEEEEEETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC----CCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHC
T ss_conf             2223454210022205776369998156667899999858978998988778899987213999999999999847