HHsearch alignment of GI: 254780603 and MMDB domain: 3kw2_A_75-257

>3kw2_A (A:75-257) Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=94.01  E-value=0.37  Score=25.65  Aligned_cols=146  Identities=10%  Similarity=0.092  Sum_probs=78.4

Q ss_pred             EEEEECCCCCH-HHHHHHHHHHHHHHCCCC--CCCCCCCC------CCHHHHHHHHHHH-HHHHC-CCCCCCCCCCCCCC
Q ss_conf             68872343206-889999999864200110--01368632------0000013444333-32110-12223221122222
Q gi|254780603|r  134 LLMVLDHVNDP-HNIGAILRSAVAFSCDGI--ITTKRYSP------SESAVLAKSASGA-LEHIP-YIRISNLTDALQKM  202 (282)
Q Consensus       134 ~~i~ld~i~dp-~NlG~I~Rta~a~g~~~v--il~~~~~~------~~~~~~~ras~Ga-~~~l~-~~~~~~~~~~l~~~  202 (282)
                      +.+++ .+-.+ .-+=.|++-|.-.|++.+  +.++++.-      -|..-++.|+.=+ -.++| +....++.++++..
T Consensus         5 i~L~~-~~pK~~~r~d~il~k~tELGV~~i~p~~s~rs~~~~~k~~r~~~ii~ea~kQs~r~~~P~I~~~~~~~~~l~~~   83 (183)
T 3kw2_A            5 ITIAI-APTKQSERXEWXLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAXKQSLKASFPVIRVNIPIQTVIADT   83 (183)
T ss_dssp             EEEEE-CCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHS
T ss_pred             EEEEE-ECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHC
T ss_conf             58998-12344117999999988118448995303540244445778999999999973766386773565889999737


Q ss_pred             CCCCCHHHHCCCCCCCC---------CCCCCCCCCEEEEECCCCCCCCHHHHHHCCC--EEEECCCCCCCHHH--HHHHH
Q ss_conf             22100000001233322---------1122368988999758678987799985893--99927896874378--99999
Q gi|254780603|r  203 HSWGFQTIGLSSDSKKP---------LEQEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIKALN--VSNAA  269 (282)
Q Consensus       203 ~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~--~v~Ip~~~~~~SLN--vs~a~  269 (282)
                      ...++.++.........         .......+++.+++|.|| |.+++-.+..-.  ...+.+...+=--.  +-+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~VGPEG-Gfs~~E~~~l~~~gf~~vsLG~rILR~ETA~i~al  162 (183)
T 3kw2_A           84 PKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALLAGFAPVSLGESRLRTETAGLVAC  162 (183)
T ss_dssp             CTTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHHHTCEEECCCSSCCCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             10253220101331012344310242124236882799988998-99999999999879989867998156785999999


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999987614
Q gi|254780603|r  270 AVALYITQNHFA  281 (282)
Q Consensus       270 ai~l~~~~~~~~  281 (282)
                      ++++|..-+.+.
T Consensus       163 s~~~~~~~~~~~  174 (183)
T 3kw2_A          163 QWIHTLQACYRI  174 (183)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999866403