HHsearch alignment of GI: 254780603 and MMDB domain: 3kw2_A_75-257
>3kw2_A (A:75-257) Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=94.01 E-value=0.37 Score=25.65 Aligned_cols=146 Identities=10% Similarity=0.092 Sum_probs=78.4
Q ss_pred EEEEECCCCCH-HHHHHHHHHHHHHHCCCC--CCCCCCCC------CCHHHHHHHHHHH-HHHHC-CCCCCCCCCCCCCC
Q ss_conf 68872343206-889999999864200110--01368632------0000013444333-32110-12223221122222
Q gi|254780603|r 134 LLMVLDHVNDP-HNIGAILRSAVAFSCDGI--ITTKRYSP------SESAVLAKSASGA-LEHIP-YIRISNLTDALQKM 202 (282)
Q Consensus 134 ~~i~ld~i~dp-~NlG~I~Rta~a~g~~~v--il~~~~~~------~~~~~~~ras~Ga-~~~l~-~~~~~~~~~~l~~~ 202 (282)
+.+++ .+-.+ .-+=.|++-|.-.|++.+ +.++++.- -|..-++.|+.=+ -.++| +....++.++++..
T Consensus 5 i~L~~-~~pK~~~r~d~il~k~tELGV~~i~p~~s~rs~~~~~k~~r~~~ii~ea~kQs~r~~~P~I~~~~~~~~~l~~~ 83 (183)
T 3kw2_A 5 ITIAI-APTKQSERXEWXLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAXKQSLKASFPVIRVNIPIQTVIADT 83 (183)
T ss_dssp EEEEE-CCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHS
T ss_pred EEEEE-ECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHC
T ss_conf 58998-12344117999999988118448995303540244445778999999999973766386773565889999737
Q ss_pred CCCCCHHHHCCCCCCCC---------CCCCCCCCCEEEEECCCCCCCCHHHHHHCCC--EEEECCCCCCCHHH--HHHHH
Q ss_conf 22100000001233322---------1122368988999758678987799985893--99927896874378--99999
Q gi|254780603|r 203 HSWGFQTIGLSSDSKKP---------LEQEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIKALN--VSNAA 269 (282)
Q Consensus 203 ~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~--~v~Ip~~~~~~SLN--vs~a~ 269 (282)
...++.++......... .......+++.+++|.|| |.+++-.+..-. ...+.+...+=--. +-+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~VGPEG-Gfs~~E~~~l~~~gf~~vsLG~rILR~ETA~i~al 162 (183)
T 3kw2_A 84 PKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALLAGFAPVSLGESRLRTETAGLVAC 162 (183)
T ss_dssp CTTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHHHTCEEECCCSSCCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 10253220101331012344310242124236882799988998-99999999999879989867998156785999999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999987614
Q gi|254780603|r 270 AVALYITQNHFA 281 (282)
Q Consensus 270 ai~l~~~~~~~~ 281 (282)
++++|..-+.+.
T Consensus 163 s~~~~~~~~~~~ 174 (183)
T 3kw2_A 163 QWIHTLQACYRI 174 (183)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999866403