HHsearch results for GI: 254780603 and protein with PDBid: 1ipa_A

>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00  E-value=0  Score=387.76  Aligned_cols=254  Identities=18%  Similarity=0.216  Sum_probs=216.8

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCC-HHH---HHHCCCCEEEECH
Q ss_conf             222376567776543112211128819998578899999789818999997378433543-455---4326996999768
Q gi|254780603|r   23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDA---NLPHPFPVKTVPP   98 (282)
Q Consensus        23 ~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~-~~~---~l~~~~~I~~v~~   98 (282)
                      .++.||.+|++.++.+ +++|++++.|++||.++|.+||+++.. +..+|++++...... ...   ....++++..|++
T Consensus         4 ~S~~np~vK~l~~L~~-kk~R~~~~~fivEG~~~v~eaL~~~~~-i~~i~~~~~~~~~~~~~~~~~l~~~~~~~v~~v~~   81 (274)
T 1ipa_A            4 TSTANPRIKELARLLE-RKHRDSQRRFLIEGAREIERALQAGIE-LEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSE   81 (274)
T ss_dssp             CCTTSHHHHHHHGGGS-HHHHHHHTEEEEESHHHHHHHHHTTCC-EEEEEEETTCCCHHHHHHHHCC-----CEEEEECH
T ss_pred             CCCCCHHHHHHHHHCC-CCCCHHHCEEEEEEHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECH
T ss_conf             4899989999987513-666015098999838999999967998-25999982632123678999988638985899699


Q ss_pred             HHHHHHHCCCCCCCCCCEEEECCCCCCH-HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf             9987752477777744202411555540-112665068872343206889999999864200110013686320000013
Q gi|254780603|r   99 QTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA  177 (282)
Q Consensus        99 ~~l~~i~~~~~~hqGi~a~~~~~~~~~l-~~~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~  177 (282)
                      +.|+++++.+ +|||+++.+........ .....++++|+||+|+||+|+|+|+|||+|||+++|+++ +++|||+++++
T Consensus        82 ~~l~~ls~~~-~~qGvia~~~~~~~~~~~~~~~~~~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~~-~~~~~~~~~~~  159 (274)
T 1ipa_A           82 AVLKKLSVRD-NPAGLIALARMPERTLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVA-GGVDLYSPQVI  159 (274)
T ss_dssp             HHHHHHCCSS-SCCSEEEEEECCCCCCCCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEE-SCCCTTCHHHH
T ss_pred             HHHHHHCCCC-CCCEEEEEECCCCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCEE
T ss_conf             9986660578-986059984167666777434689789999689786279999999997498778844-87233464000


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCC
Q ss_conf             44433332110122232211222222210000000123332211223689889997586789877999858939992789
Q gi|254780603|r  178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP  257 (282)
Q Consensus       178 ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~  257 (282)
                      |+|+|++|++|++...+ .+.++.+++.++++++++.++...+++.+++++++||||+|++|||+++++.||+.|+|||.
T Consensus       160 r~s~ga~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~  238 (274)
T 1ipa_A          160 RNSTGVVFSLRTLAASE-SEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQ  238 (274)
T ss_dssp             HHTTTGGGTSCEEEECH-HHHHHHHHHTTCCEEEECTTCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCC
T ss_pred             CCCCCEEEEEEEEEECH-HHHHHHHHHCCEEECCCCCCCCCCCEECCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCC
T ss_conf             03543168998886113-77888765123000012333343110014677739999167678899999748979997699


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             687437899999999999987614
Q gi|254780603|r  258 GIIKALNVSNAAAVALYITQNHFA  281 (282)
Q Consensus       258 ~~~~SLNvs~a~ai~l~~~~~~~~  281 (282)
                      |.++|||||+|+||+|||+.||+.
T Consensus       239 g~~~SLNvsvA~~I~lyE~~Rqr~  262 (274)
T 1ipa_A          239 GQADSLNVSVSAALLLYEALRQRL  262 (274)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999701399999999999998488