HHsearch results for GI: 254780603 and protein with PDBid: 1ipa_A
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=0 Score=387.76 Aligned_cols=254 Identities=18% Similarity=0.216 Sum_probs=216.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCC-HHH---HHHCCCCEEEECH
Q ss_conf 222376567776543112211128819998578899999789818999997378433543-455---4326996999768
Q gi|254780603|r 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDA---NLPHPFPVKTVPP 98 (282)
Q Consensus 23 ~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~-~~~---~l~~~~~I~~v~~ 98 (282)
.++.||.+|++.++.+ +++|++++.|++||.++|.+||+++.. +..+|++++...... ... ....++++..|++
T Consensus 4 ~S~~np~vK~l~~L~~-kk~R~~~~~fivEG~~~v~eaL~~~~~-i~~i~~~~~~~~~~~~~~~~~l~~~~~~~v~~v~~ 81 (274)
T 1ipa_A 4 TSTANPRIKELARLLE-RKHRDSQRRFLIEGAREIERALQAGIE-LEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSE 81 (274)
T ss_dssp CCTTSHHHHHHHGGGS-HHHHHHHTEEEEESHHHHHHHHHTTCC-EEEEEEETTCCCHHHHHHHHCC-----CEEEEECH
T ss_pred CCCCCHHHHHHHHHCC-CCCCHHHCEEEEEEHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECH
T ss_conf 4899989999987513-666015098999838999999967998-25999982632123678999988638985899699
Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCCH-HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 9987752477777744202411555540-112665068872343206889999999864200110013686320000013
Q gi|254780603|r 99 QTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 (282)
Q Consensus 99 ~~l~~i~~~~~~hqGi~a~~~~~~~~~l-~~~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ 177 (282)
+.|+++++.+ +|||+++.+........ .....++++|+||+|+||+|+|+|+|||+|||+++|+++ +++|||+++++
T Consensus 82 ~~l~~ls~~~-~~qGvia~~~~~~~~~~~~~~~~~~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~~-~~~~~~~~~~~ 159 (274)
T 1ipa_A 82 AVLKKLSVRD-NPAGLIALARMPERTLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVA-GGVDLYSPQVI 159 (274)
T ss_dssp HHHHHHCCSS-SCCSEEEEEECCCCCCCCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEE-SCCCTTCHHHH
T ss_pred HHHHHHCCCC-CCCEEEEEECCCCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCEE
T ss_conf 9986660578-986059984167666777434689789999689786279999999997498778844-87233464000
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCC
Q ss_conf 44433332110122232211222222210000000123332211223689889997586789877999858939992789
Q gi|254780603|r 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 (282)
Q Consensus 178 ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~ 257 (282)
|+|+|++|++|++...+ .+.++.+++.++++++++.++...+++.+++++++||||+|++|||+++++.||+.|+|||.
T Consensus 160 r~s~ga~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~ 238 (274)
T 1ipa_A 160 RNSTGVVFSLRTLAASE-SEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQ 238 (274)
T ss_dssp HHTTTGGGTSCEEEECH-HHHHHHHHHTTCCEEEECTTCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCC
T ss_pred CCCCCEEEEEEEEEECH-HHHHHHHHHCCEEECCCCCCCCCCCEECCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCC
T ss_conf 03543168998886113-77888765123000012333343110014677739999167678899999748979997699
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 687437899999999999987614
Q gi|254780603|r 258 GIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 258 ~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
|.++|||||+|+||+|||+.||+.
T Consensus 239 g~~~SLNvsvA~~I~lyE~~Rqr~ 262 (274)
T 1ipa_A 239 GQADSLNVSVSAALLLYEALRQRL 262 (274)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999701399999999999998488