HHsearch results for GI: 254780603 and protein with PDBid: 1v2x_A

>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00  E-value=3.1e-43  Score=265.89  Aligned_cols=150  Identities=23%  Similarity=0.341  Sum_probs=138.0

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             66506887234320688999999986420011001368632000001344433332110122232211222222210000
Q gi|254780603|r  130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT  209 (282)
Q Consensus       130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i  209 (282)
                      +.++++|+||+|+||+|+|+|+|||+|||++.+++...++++++  ..++++|+.+++++..+.+..++++.+++.|+++
T Consensus        19 ~~~~~~vvld~v~~p~NlGaIiRta~afG~~~i~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~~i   96 (194)
T 1v2x_A           19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT--FNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTV   96 (194)
T ss_dssp             CBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCC--CCSSCSSGGGTSEEEEESSHHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCH--HHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCEE
T ss_conf             89998999967988465999999999749964303588667713--4431034431246999558999999999759825


Q ss_pred             HHCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             000123-332211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r  210 IGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA  281 (282)
Q Consensus       210 ~~~~~~-~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~  281 (282)
                      ++++.. +..++.+++++.+.+||||+|++|||+++++.||.+|+|||.+.++|||||+|+||+|||..||+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~lVfG~E~~Gls~e~l~~~d~~v~IPm~~~~~SLNvs~A~aI~lyE~~Rq~~  169 (194)
T 1v2x_A           97 YATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL  169 (194)
T ss_dssp             EEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf             4201222245401102688828997676788999999858979995899998632699999999999999776