HHsearch results for GI: 254780603 and protein with PDBid: 1zjr_A
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=1.5e-42 Score=261.93 Aligned_cols=151 Identities=22% Similarity=0.299 Sum_probs=136.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 66506887234320688999999986420011001368632000001344433332110122232211222222210000
Q gi|254780603|r 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 (282)
Q Consensus 130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i 209 (282)
+.++++++||+|+||+|+|+|+|||+|||+++|++...... ..+...++++|+.+++++..+.++.+++..+++.|+++
T Consensus 22 ~~~~l~vvLd~i~~p~NiGaI~Rta~afG~~~v~l~~~~~~-~~~~~~~~s~gs~~~~~~~~~~~~~~~l~~~~~~~~~i 100 (211)
T 1zjr_A 22 RQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGK-KAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQI 100 (211)
T ss_dssp CEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTT-CCCCCHHHHTTGGGSSEEEECSCHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC-CCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCEE
T ss_conf 89998999958988437999999999858988999489888-62778888524410357999678899987654048448
Q ss_pred HHCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0001233-32211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r 210 IGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 210 ~~~~~~~-~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
++++.++ +.++.+++++++.+||||+|++|||+++++.||..|+|||.|.++|||||+|+||+|||+.||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~lvfG~E~~GLs~e~l~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~Rqr~ 173 (211)
T 1zjr_A 101 VATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQRE 173 (211)
T ss_dssp EEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf 8740333332221245663069997676678999999857989997799999700499999999999998687