HHsearch results for GI: 254780603 and protein with PDBid: 2ha8_A
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=267.01 Aligned_cols=148 Identities=22% Similarity=0.368 Sum_probs=135.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHH
Q ss_conf 5068872343206889999999864200110013686320000013444333321101222--32211222222210000
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQT 209 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~--~~~~~~l~~~~~~~~~i 209 (282)
.+++||||+|+||+|+|+|+|||+|||++.+++.+.+ +++++.+.|+|+|+++++++..+ .++.+++.+++..||++
T Consensus 25 ~~l~vvld~i~dP~NlG~IiRta~afGv~~viv~~~~-~~~~~~~~~~s~g~~~~i~~~~~~~~~~~~~l~~~k~~g~~v 103 (184)
T 2ha8_A 25 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQ-CISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTI 103 (184)
T ss_dssp CCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCGG-GGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHHTTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCC-CCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 9879998178880379999999998199779507644-568747776405531020211345146899999987559689
Q ss_pred HHCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 00012333-221122368988999758678987799985893999278968743789999999999998761
Q gi|254780603|r 210 IGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 (282)
Q Consensus 210 ~~~~~~~~-~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~ 280 (282)
++++..++ .++.+++++++++||||+|++|||+++++.||..++|||.+.++|||||+|+||+|||+.||+
T Consensus 104 v~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IP~~~~~~SLNvs~A~aI~lye~~rq~ 175 (184)
T 2ha8_A 104 IGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 175 (184)
T ss_dssp EEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 873132455333211146885688676557889999985897999729699970259999999999999834