HHsearch results for GI: 254780603 and protein with PDBid: 2i6d_A
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83}
Probab=100.00 E-value=0 Score=386.74 Aligned_cols=242 Identities=21% Similarity=0.252 Sum_probs=202.0
Q ss_pred CHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHCCCCEEEEC-HHHHHHHH
Q ss_conf 76567776543112211128819998578899999789818999997378433543455432699699976-89987752
Q gi|254780603|r 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP-PQTIDKIV 105 (282)
Q Consensus 27 n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~~~~~l~~~~~I~~v~-~~~l~~i~ 105 (282)
|+.+|+++++.++ |+|++++.|++||.|+|.|||+++. +..++.++...... .......+..+. ...|++++
T Consensus 7 ~~~iK~~~~L~~k-k~R~~~~~flvEG~~~v~eal~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~is 79 (257)
T 2i6d_A 7 ANQIKFLRSLRER-KYRLREQAFAVEGPKLVGEMLPFYR--CRMLVGTAAMLRAV----STPHDAEVVELPESFDFKRIS 79 (257)
T ss_dssp HHHHHHHHHTTSH-HHHHHHTEEEEESHHHHHHHGGGSC--EEEEEEEHHHHHTS----CCCTTCEEEEECTTCCGGGTC
T ss_pred HHHHHHHHHHHCC-CHHHHHCEEEEEEHHHHHHHHHCCC--CCEEEECHHHHHHH----CCCCCCCEEEECCHHHHHHHH
T ss_conf 9999999970163-0337869799982899999982499--87999638998653----330368469956789999974
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 47777774420241155554011266506887234320688999999986420011001368632000001344433332
Q gi|254780603|r 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 (282)
Q Consensus 106 ~~~~~hqGi~a~~~~~~~~~l~~~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~ 185 (282)
+.. +|||+++.+..... ......+++|+||+||||||+|+|+|||+|||+++|+++++++|||+|+++|+|||++|
T Consensus 80 ~~~-~~qGi~Av~~~p~~---~~~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~d~~~~k~~ras~Ga~~ 155 (257)
T 2i6d_A 80 TQT-TPQPLMAVFDLPAE---PEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALA 155 (257)
T ss_dssp CSS-SCCSEEEEEECCCC---CCCCCCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGG
T ss_pred CCC-CCCCEEEEEECCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCE
T ss_conf 889-99728999963568---76566884999957988457999999999809860200014556577666321157501
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC--CCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEC-----CCC
Q ss_conf 1101222322112222222100000001233322--112236898899975867898779998589399927-----896
Q gi|254780603|r 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPG 258 (282)
Q Consensus 186 ~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip-----~~~ 258 (282)
++|++.+.++.++++.+++.|+++++++.++... ....+++++++||||||++|||+++++.||+.|+|| |.|
T Consensus 156 ~v~~~~~~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~~d~~v~IP~~~~~m~g 235 (257)
T 2i6d_A 156 RVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKG 235 (257)
T ss_dssp TCEEEECSCHHHHHHHHHHTTCCEEEEEEEEEETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC--
T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCC
T ss_conf 10223331256789998536835998302455310000126788659998787678899999848868998998778899
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 874378999999999999876
Q gi|254780603|r 259 IIKALNVSNAAAVALYITQNH 279 (282)
Q Consensus 259 ~~~SLNvs~a~ai~l~~~~~~ 279 (282)
++||||||+|+||+|||+.||
T Consensus 236 ~veSLNva~A~aI~lyE~~Rq 256 (257)
T 2i6d_A 236 HTESLNVAIATAILCSEWRRR 256 (257)
T ss_dssp --CCCCHHHHHHHHHHHHHHT
T ss_pred CCCCEEHHHHHHHHHHHHHHC
T ss_conf 987310999999999999856