HHsearch results for GI: 254780603 and protein with PDBid: 2i6d_A

>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83}
Probab=100.00  E-value=0  Score=386.74  Aligned_cols=242  Identities=21%  Similarity=0.252  Sum_probs=202.0

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHCCCCEEEEC-HHHHHHHH
Q ss_conf             76567776543112211128819998578899999789818999997378433543455432699699976-89987752
Q gi|254780603|r   27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP-PQTIDKIV  105 (282)
Q Consensus        27 n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~~~~~l~~~~~I~~v~-~~~l~~i~  105 (282)
                      |+.+|+++++.++ |+|++++.|++||.|+|.|||+++.  +..++.++......    .......+..+. ...|++++
T Consensus         7 ~~~iK~~~~L~~k-k~R~~~~~flvEG~~~v~eal~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~is   79 (257)
T 2i6d_A            7 ANQIKFLRSLRER-KYRLREQAFAVEGPKLVGEMLPFYR--CRMLVGTAAMLRAV----STPHDAEVVELPESFDFKRIS   79 (257)
T ss_dssp             HHHHHHHHHTTSH-HHHHHHTEEEEESHHHHHHHGGGSC--EEEEEEEHHHHHTS----CCCTTCEEEEECTTCCGGGTC
T ss_pred             HHHHHHHHHHHCC-CHHHHHCEEEEEEHHHHHHHHHCCC--CCEEEECHHHHHHH----CCCCCCCEEEECCHHHHHHHH
T ss_conf             9999999970163-0337869799982899999982499--87999638998653----330368469956789999974


Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             47777774420241155554011266506887234320688999999986420011001368632000001344433332
Q gi|254780603|r  106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE  185 (282)
Q Consensus       106 ~~~~~hqGi~a~~~~~~~~~l~~~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~  185 (282)
                      +.. +|||+++.+.....   ......+++|+||+||||||+|+|+|||+|||+++|+++++++|||+|+++|+|||++|
T Consensus        80 ~~~-~~qGi~Av~~~p~~---~~~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~d~~~~k~~ras~Ga~~  155 (257)
T 2i6d_A           80 TQT-TPQPLMAVFDLPAE---PEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALA  155 (257)
T ss_dssp             CSS-SCCSEEEEEECCCC---CCCCCCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGG
T ss_pred             CCC-CCCCEEEEEECCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCE
T ss_conf             889-99728999963568---76566884999957988457999999999809860200014556577666321157501


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC--CCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEC-----CCC
Q ss_conf             1101222322112222222100000001233322--112236898899975867898779998589399927-----896
Q gi|254780603|r  186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPG  258 (282)
Q Consensus       186 ~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip-----~~~  258 (282)
                      ++|++.+.++.++++.+++.|+++++++.++...  ....+++++++||||||++|||+++++.||+.|+||     |.|
T Consensus       156 ~v~~~~~~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~~d~~v~IP~~~~~m~g  235 (257)
T 2i6d_A          156 RVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKG  235 (257)
T ss_dssp             TCEEEECSCHHHHHHHHHHTTCCEEEEEEEEEETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC--
T ss_pred             ECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCC
T ss_conf             10223331256789998536835998302455310000126788659998787678899999848868998998778899


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             874378999999999999876
Q gi|254780603|r  259 IIKALNVSNAAAVALYITQNH  279 (282)
Q Consensus       259 ~~~SLNvs~a~ai~l~~~~~~  279 (282)
                      ++||||||+|+||+|||+.||
T Consensus       236 ~veSLNva~A~aI~lyE~~Rq  256 (257)
T 2i6d_A          236 HTESLNVAIATAILCSEWRRR  256 (257)
T ss_dssp             --CCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEHHHHHHHHHHHHHHC
T ss_conf             987310999999999999856