Query gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 282 No_of_seqs 133 out of 4339 Neff 8.0 Searched_HMMs 23785 Date Tue May 31 18:09:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780603.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1x7o_A Avirb, rRNA methyltrans 100.0 0 0 405.0 19.5 262 18-281 10-279 (287) 2 3nk6_A 23S rRNA methyltransfer 100.0 0 0 405.6 17.0 254 22-280 10-267 (277) 3 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 0 0 387.8 19.4 254 23-281 4-262 (274) 4 1gz0_A Hypothetical tRNA/RRNA 100.0 0 0 381.4 18.1 238 43-281 7-253 (253) 5 2i6d_A RNA methyltransferase, 100.0 0 0 386.7 12.2 242 27-279 7-256 (257) 6 2ha8_A TAR (HIV-1) RNA loop bi 100.0 2E-43 0 267.0 10.2 148 132-280 25-175 (184) 7 1v2x_A TRNA (GM18) methyltrans 100.0 3.1E-43 0 265.9 8.9 150 130-281 19-169 (194) 8 1zjr_A TRNA (guanosine-2'-O-)- 100.0 1.5E-42 0 261.9 9.7 151 130-281 22-173 (211) 9 3e5y_A TRMH family RNA methylt 100.0 6.9E-39 2.9E-43 241.0 9.6 148 134-281 6-155 (160) 10 3ic6_A Putative methylase fami 100.0 6.7E-39 2.8E-43 241.0 9.2 151 132-282 16-196 (223) 11 3n4j_A RNA methyltransferase; 100.0 2.1E-38 9E-43 238.1 11.3 150 132-281 3-157 (165) 12 3kty_A Probable methyltransfer 100.0 1.1E-38 4.7E-43 239.8 9.5 149 132-280 9-172 (173) 13 3onp_A TRNA/RRNA methyltransfe 100.0 1.3E-36 5.3E-41 228.0 10.3 148 134-281 5-163 (249) 14 3ilk_A Uncharacterized tRNA/RR 100.0 1.7E-34 7.3E-39 215.7 10.0 143 132-280 6-160 (244) 15 3dcm_X AdoMet, uncharacterized 99.7 5.8E-17 2.5E-21 115.3 5.8 134 143-277 27-184 (192) 16 2yy8_A ATRM56, UPF0106 protein 96.9 0.0032 1.3E-07 36.7 7.2 123 142-277 13-146 (201) 17 2o3a_A UPF0106 protein AF_0751 96.8 0.0021 8.8E-08 37.7 5.5 121 142-276 16-142 (178) 18 2qwv_A UPF0217 protein VC_A105 96.0 0.0037 1.5E-07 36.3 3.2 129 131-281 67-206 (208) 19 1v6z_A Hypothetical protein TT 94.4 0.15 6.3E-06 27.0 7.2 131 135-273 73-219 (228) 20 2qmm_A UPF0217 protein AF_1056 94.0 0.025 1E-06 31.5 2.6 124 131-279 62-195 (197) 21 1vhy_A Hypothetical protein HI 93.2 0.13 5.6E-06 27.3 5.2 137 135-276 82-242 (257) 22 1vhk_A Hypothetical protein YQ 92.0 0.094 4E-06 28.2 3.1 141 134-277 82-252 (268) 23 2egv_A UPF0088 protein AQ_165; 90.4 0.77 3.2E-05 23.0 8.3 132 132-269 71-219 (229) 24 3kw2_A Probable R-RNA methyltr 83.2 2 8.5E-05 20.6 6.2 128 132-260 77-225 (257) 25 1z85_A Hypothetical protein TM 79.7 2.7 0.00011 19.8 8.5 135 135-277 87-232 (234) 26 1vh0_A Hypothetical UPF0247 pr 72.6 3.7 0.00016 19.1 4.0 73 199-279 66-150 (161) 27 1to0_A Hypothetical UPF0247 pr 68.1 5.4 0.00023 18.1 5.3 68 206-279 70-148 (167) 28 1o6d_A Hypothetical UPF0247 pr 57.3 5.9 0.00025 17.9 2.6 73 199-279 59-142 (163) 29 1zco_A 2-dehydro-3-deoxyphosph 56.3 2.6 0.00011 19.9 0.7 42 143-190 205-246 (262) 30 2v3j_A Essential for mitotic g 53.8 9.9 0.00041 16.6 3.8 73 203-279 171-248 (258) 31 1k3r_A Conserved protein MT000 40.0 12 0.0005 16.1 2.0 78 199-281 175-264 (268) 32 3mc3_A DSRE/DSRF-like family p 38.5 13 0.00054 16.0 1.9 110 130-252 14-132 (134) 33 2nwr_A 2-dehydro-3-deoxyphosph 36.6 5.9 0.00025 17.9 -0.0 45 145-195 202-246 (267) 34 2fi0_A Conserved domain protei 32.9 5.2 0.00022 18.2 -0.8 45 169-213 34-81 (81) 35 3dpi_A NAD+ synthetase; ssgcid 31.1 23 0.00097 14.5 2.4 13 145-157 144-156 (285) 36 2vhh_A CG3027-PA; hydrolase; 2 27.7 21 0.0009 14.7 1.6 30 135-168 231-260 (405) 37 1vr6_A Phospho-2-dehydro-3-deo 22.3 18 0.00075 15.2 0.4 17 149-165 294-310 (350) No 1 >1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Probab=100.00 E-value=0 Score=405.05 Aligned_cols=262 Identities=18% Similarity=0.248 Sum_probs=220.6 Q ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCC-CCCCCHHHHHHCCCCEEEE Q ss_conf 000002223765677765431122111288199985788999997898189999973784-3354345543269969997 Q gi|254780603|r 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV 96 (282) Q Consensus 18 ~~~~k~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~-~~~~~~~~~l~~~~~I~~v 96 (282) +...+++..|+.+|++.++.+++++|++++.|+|||.|+|.|||+++.. +..+|++++. ..+....+..........+ T Consensus 10 ~~~~~iss~N~~~k~~~~l~~~r~~R~~~g~fivEG~~~V~eal~~~~~-i~~l~~~~~~~~~~~~~~l~~~~~~~~i~v 88 (287) T 1x7o_A 10 PAARRITSRNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGWP-VRTLLYDGQRELSKWARELLRTVRTEQIAM 88 (287) T ss_dssp --------CCHHHHHHHHTTSCHHHHHHHTEEEEESHHHHHHHHHTTCC-EEEEEEESSCCCCHHHHHHHHHSCSEEEEE T ss_pred CCCCEECCCCHHHHHHHHHHHCCCHHHHHCEEEEECHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHHHCCCCEEEE T ss_conf 9877600699999999998548150106199999877999999868998-499999376222467898764346764997 Q ss_pred CHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH Q ss_conf 689987752477777744202411555540112--665068872343206889999999864200110013686320000 Q gi|254780603|r 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 (282) Q Consensus 97 ~~~~l~~i~~~~~~hqGi~a~~~~~~~~~l~~~--~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~ 174 (282) ..+.+.++.+...+|||+++.+.. +...++.+ ..++++|+||+||||+|+|+|+|||+|||+++|+++++++|||++ T Consensus 89 ~~~~~~~~~~~~~~~qgv~av~~~-p~~~l~~l~~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~~~~~~ 167 (287) T 1x7o_A 89 APDLLMELGEKNEAPPEVVAVVEM-PADDLDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDP 167 (287) T ss_dssp CHHHHTTSSCSSSCCCSEEEEEEC-CCCCGGGSCCCTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSH T ss_pred CHHHHHHHHCCCCCCCEEEEEEEC-CCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC T ss_conf 839999985589998739999976-8677657404589779999668776558999998885598769997303444443 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC Q ss_conf 0134443333211012223221122222221-----00000001233322112236898899975867898779998589 Q gi|254780603|r 175 VLAKSASGALEHIPYIRISNLTDALQKMHSW-----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 (282) Q Consensus 175 ~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d 249 (282) +++|+|+|++|++|++++.++.++++.+++. ++++++++.++..++++++++++++||||||++|||+++++.|| T Consensus 168 ~~~ras~Ga~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d 247 (287) T 1x7o_A 168 KSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCD 247 (287) T ss_dssp HHHHHTTTGGGTSCEEEESSHHHHHHHHHHHHHHTCCCEEEEECTTCSEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCS T ss_pred CCCEECCCHHHHCCEEEEEHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCC T ss_conf 00000102132110489810467777655554048756874120002432111203686299988888788999998589 Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 39992789687437899999999999987614 Q gi|254780603|r 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282) Q Consensus 250 ~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282) +.|+|||.|.+||||||+|+||+|||+.|||. T Consensus 248 ~~v~IPm~g~~eSLNvsvA~~I~lyE~~RqR~ 279 (287) T 1x7o_A 248 YTVSIPMAGSASSLNAANAATAILYEAVRQRI 279 (287) T ss_dssp EEEECCCSSSSCCCCHHHHHHHHHHHHHHHHS T ss_pred EEEEECCCCCCCEEHHHHHHHHHHHHHHHHHH T ss_conf 89998999999712299999999999998785 No 2 >3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Probab=100.00 E-value=0 Score=405.57 Aligned_cols=254 Identities=15% Similarity=0.209 Sum_probs=218.0 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCC-CCCHHHHHHCCCCEEEECHHH Q ss_conf 0222376567776543112211128819998578899999789818999997378433-543455432699699976899 Q gi|254780603|r 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQT 100 (282) Q Consensus 22 k~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~-~~~~~~~l~~~~~I~~v~~~~ 100 (282) ..++.||.+|++.++. +++|++.+.|++||.++|.|||+++.. +..+|++++... ..........+++++.++.+. T Consensus 10 ItS~~Np~ik~l~~L~--kk~R~~~~~~lveG~~~v~eal~~g~~-~~~l~~~~~~~~~~~l~~l~~~~~i~v~~v~~~~ 86 (277) T 3nk6_A 10 ITNASDPAVQRIIDVT--KHSRASIKTTLIEDTEPLMECIRAGVQ-FIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSI 86 (277) T ss_dssp TSBCSSCSHHHHHHHH--HTC----CEEEEESHHHHHHHHHTTCC-EEEEEEETTSCCCHHHHHHHHHTTCCEEEECHHH T ss_pred EECCCCHHHHHHHHHH--HCCHHHCCEEEEEEHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHHHCCCCEEEECHHH T ss_conf 6289998999999876--505525395999807999999977999-3699997898778899999996799589978999 Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCCHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHH Q ss_conf 87752477777744202411555540112-665068872343206889999999864200110013-6863200000134 Q gi|254780603|r 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAK 178 (282) Q Consensus 101 l~~i~~~~~~hqGi~a~~~~~~~~~l~~~-~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~-~~~~~~~~~~~~r 178 (282) |+++++.+ +|||+++.+.......++++ ..++++|+||+||||||+|+|+|||+|||+++|+++ ++++|+|+++++| T Consensus 87 l~~ls~~~-~~qgv~a~~~~~~~~~l~~~~~~~~~ilvLD~IqDPgNlGaIiRta~afG~~~vil~~~~~~~~~~~kv~R 165 (277) T 3nk6_A 87 VNQLFKAE-RKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLR 165 (277) T ss_dssp HTTCC------CCEEEEEECCCCCCHHHHHHHCSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHH T ss_pred HHHHHCCC-CCCEEEEEECCCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC T ss_conf 99986589-97559999846885558777404986999947887745899999999708857996257855234731243 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC-CCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCC Q ss_conf 443333211012223221122222221000000012333221122-3689889997586789877999858939992789 Q gi|254780603|r 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 (282) Q Consensus 179 as~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~ 257 (282) +|+|++|++|++.. ++.+++++++++||++++++.+++.+++++ +++++++||||||++||++++++.||..|+|||. T Consensus 166 aS~Ga~~~~p~~~~-~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~ 244 (277) T 3nk6_A 166 ASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPML 244 (277) T ss_dssp HTTTCTTTSCEEEC-CHHHHHHHHHHTTCCEEEECTTCSEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCS T ss_pred CCCCCEEECCEEEC-CCCHHHHHHHHCCCEEEEEEECCCCCEECCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCC T ss_conf 25663342120220-32034677763586179998437644000114788889998776678889999738949997298 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 68743789999999999998761 Q gi|254780603|r 258 GIIKALNVSNAAAVALYITQNHF 280 (282) Q Consensus 258 ~~~~SLNvs~a~ai~l~~~~~~~ 280 (282) |.+||||||+|+||+|||..||+ T Consensus 245 g~~eSLNvsvA~~I~lyE~~rq~ 267 (277) T 3nk6_A 245 SSTESLNVSVSVGIALHERSARN 267 (277) T ss_dssp STTCCCCHHHHHHHHHHHTHHHH T ss_pred CCCCEEEHHHHHHHHHHHHHHHC T ss_conf 99972159999999999999713 No 3 >1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Probab=100.00 E-value=0 Score=387.76 Aligned_cols=254 Identities=18% Similarity=0.216 Sum_probs=216.8 Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCC-HHH---HHHCCCCEEEECH Q ss_conf 222376567776543112211128819998578899999789818999997378433543-455---4326996999768 Q gi|254780603|r 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDA---NLPHPFPVKTVPP 98 (282) Q Consensus 23 ~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~-~~~---~l~~~~~I~~v~~ 98 (282) .++.||.+|++.++.+ +++|++++.|++||.++|.+||+++.. +..+|++++...... ... ....++++..|++ T Consensus 4 ~S~~np~vK~l~~L~~-kk~R~~~~~fivEG~~~v~eaL~~~~~-i~~i~~~~~~~~~~~~~~~~~l~~~~~~~v~~v~~ 81 (274) T 1ipa_A 4 TSTANPRIKELARLLE-RKHRDSQRRFLIEGAREIERALQAGIE-LEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSE 81 (274) T ss_dssp CCTTSHHHHHHHGGGS-HHHHHHHTEEEEESHHHHHHHHHTTCC-EEEEEEETTCCCHHHHHHHHCC-----CEEEEECH T ss_pred CCCCCHHHHHHHHHCC-CCCCHHHCEEEEEEHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECH T ss_conf 4899989999987513-666015098999838999999967998-25999982632123678999988638985899699 Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCCH-HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH Q ss_conf 9987752477777744202411555540-112665068872343206889999999864200110013686320000013 Q gi|254780603|r 99 QTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 (282) Q Consensus 99 ~~l~~i~~~~~~hqGi~a~~~~~~~~~l-~~~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ 177 (282) +.|+++++.+ +|||+++.+........ .....++++|+||+|+||+|+|+|+|||+|||+++|+++ +++|||+++++ T Consensus 82 ~~l~~ls~~~-~~qGvia~~~~~~~~~~~~~~~~~~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~~-~~~~~~~~~~~ 159 (274) T 1ipa_A 82 AVLKKLSVRD-NPAGLIALARMPERTLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVA-GGVDLYSPQVI 159 (274) T ss_dssp HHHHHHCCSS-SCCSEEEEEECCCCCCCCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEE-SCCCTTCHHHH T ss_pred HHHHHHCCCC-CCCEEEEEECCCCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCEE T ss_conf 9986660578-986059984167666777434689789999689786279999999997498778844-87233464000 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCC Q ss_conf 44433332110122232211222222210000000123332211223689889997586789877999858939992789 Q gi|254780603|r 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 (282) Q Consensus 178 ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~ 257 (282) |+|+|++|++|++...+ .+.++.+++.++++++++.++...+++.+++++++||||+|++|||+++++.||+.|+|||. T Consensus 160 r~s~ga~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~ 238 (274) T 1ipa_A 160 RNSTGVVFSLRTLAASE-SEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQ 238 (274) T ss_dssp HHTTTGGGTSCEEEECH-HHHHHHHHHTTCCEEEECTTCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCC T ss_pred CCCCCEEEEEEEEEECH-HHHHHHHHHCCEEECCCCCCCCCCCEECCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCC T ss_conf 03543168998886113-77888765123000012333343110014677739999167678899999748979997699 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 687437899999999999987614 Q gi|254780603|r 258 GIIKALNVSNAAAVALYITQNHFA 281 (282) Q Consensus 258 ~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282) |.++|||||+|+||+|||+.||+. T Consensus 239 g~~~SLNvsvA~~I~lyE~~Rqr~ 262 (274) T 1ipa_A 239 GQADSLNVSVSAALLLYEALRQRL 262 (274) T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 999701399999999999998488 No 4 >1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Probab=100.00 E-value=0 Score=381.43 Aligned_cols=238 Identities=27% Similarity=0.400 Sum_probs=213.0 Q ss_pred CCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCC-CHHH--HHHCCCCEEEECHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 112881999857889999978981899999737843354-3455--4326996999768998775247777774420241 Q gi|254780603|r 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 (282) Q Consensus 43 R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~-~~~~--~l~~~~~I~~v~~~~l~~i~~~~~~hqGi~a~~~ 119 (282) |.++..++|||.|+|.|+|+++++.+..+|++++...+. .... ...++++++.++++.|++++... +|||+++.+. T Consensus 7 ~~~~~~e~IyG~~~V~eaL~~~~~~i~~l~v~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~~~~~~-~~qgv~~~~~ 85 (253) T 1gz0_A 7 RGSHMSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGA-VHQGIIARVK 85 (253) T ss_dssp -----CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEEEECSHHHHHTTTSC-CCTTEEEEEC T ss_pred CCCCCCCEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHCCCC-CCCCCHHEEE T ss_conf 999997189888999999848997627999738987737899999999779849995999997750343-3455100010 Q ss_pred CCCCCCHHHC------CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 1555540112------6650688723432068899999998642001100136863200000134443333211012223 Q gi|254780603|r 120 PLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 (282) Q Consensus 120 ~~~~~~l~~~------~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~ 193 (282) +......+.. .+++++|+||+++||+|+|+|+|||+|||+++|++++++++++++++.|+|+|+++++|+.+++ T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vvLd~i~dp~NlGaiiRta~afG~~~vil~~~~~~~~~~~~~r~s~G~~~~~~~~~~~ 165 (253) T 1gz0_A 86 PGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVT 165 (253) T ss_dssp CCCCCCGGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEES T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHCCCHHCCCCCCCC T ss_conf 11213356699998466898699995578850799999999972998683046766765242234325861128950169 Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 22112222222100000001233322112236898899975867898779998589399927896874378999999999 Q gi|254780603|r 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 (282) Q Consensus 194 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l 273 (282) |+.++++.+++.|+++++++..+..++++++++++.+||||||++|||+++++.||..|+|||.|.++|||||+|+||+| T Consensus 166 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~GnE~~Gls~~~l~~~d~~v~IP~~g~~~SLNva~A~aI~l 245 (253) T 1gz0_A 166 NLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICL 245 (253) T ss_dssp CHHHHHHHHHHTTCEEEEECTTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHH T ss_conf 99999998643012221223234553112104797699987877788999998599899978989995061999999999 Q ss_pred HHHHHHHC Q ss_conf 99987614 Q gi|254780603|r 274 YITQNHFA 281 (282) Q Consensus 274 ~~~~~~~~ 281 (282) ||+.|||+ T Consensus 246 ye~~rqr~ 253 (253) T 1gz0_A 246 FEAVRQRS 253 (253) T ss_dssp HHHHHHTC T ss_pred HHHHHCCC T ss_conf 99997649 No 5 >2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83} Probab=100.00 E-value=0 Score=386.74 Aligned_cols=242 Identities=21% Similarity=0.252 Sum_probs=202.0 Q ss_pred CHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHCCCCEEEEC-HHHHHHHH Q ss_conf 76567776543112211128819998578899999789818999997378433543455432699699976-89987752 Q gi|254780603|r 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP-PQTIDKIV 105 (282) Q Consensus 27 n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~~~~~l~~~~~I~~v~-~~~l~~i~ 105 (282) |+.+|+++++.++ |+|++++.|++||.|+|.|||+++. +..++.++...... .......+..+. ...|++++ T Consensus 7 ~~~iK~~~~L~~k-k~R~~~~~flvEG~~~v~eal~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~is 79 (257) T 2i6d_A 7 ANQIKFLRSLRER-KYRLREQAFAVEGPKLVGEMLPFYR--CRMLVGTAAMLRAV----STPHDAEVVELPESFDFKRIS 79 (257) T ss_dssp HHHHHHHHHTTSH-HHHHHHTEEEEESHHHHHHHGGGSC--EEEEEEEHHHHHTS----CCCTTCEEEEECTTCCGGGTC T ss_pred HHHHHHHHHHHCC-CHHHHHCEEEEEEHHHHHHHHHCCC--CCEEEECHHHHHHH----CCCCCCCEEEECCHHHHHHHH T ss_conf 9999999970163-0337869799982899999982499--87999638998653----330368469956789999974 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 47777774420241155554011266506887234320688999999986420011001368632000001344433332 Q gi|254780603|r 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 (282) Q Consensus 106 ~~~~~hqGi~a~~~~~~~~~l~~~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~ 185 (282) +.. +|||+++.+..... ......+++|+||+||||||+|+|+|||+|||+++|+++++++|||+|+++|+|||++| T Consensus 80 ~~~-~~qGi~Av~~~p~~---~~~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~d~~~~k~~ras~Ga~~ 155 (257) T 2i6d_A 80 TQT-TPQPLMAVFDLPAE---PEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALA 155 (257) T ss_dssp CSS-SCCSEEEEEECCCC---CCCCCCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGG T ss_pred CCC-CCCCEEEEEECCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCE T ss_conf 889-99728999963568---76566884999957988457999999999809860200014556577666321157501 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC--CCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEC-----CCC Q ss_conf 1101222322112222222100000001233322--112236898899975867898779998589399927-----896 Q gi|254780603|r 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPG 258 (282) Q Consensus 186 ~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip-----~~~ 258 (282) ++|++.+.++.++++.+++.|+++++++.++... ....+++++++||||||++|||+++++.||+.|+|| |.| T Consensus 156 ~v~~~~~~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~~d~~v~IP~~~~~m~g 235 (257) T 2i6d_A 156 RVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKG 235 (257) T ss_dssp TCEEEECSCHHHHHHHHHHTTCCEEEEEEEEEETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC-- T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCC T ss_conf 10223331256789998536835998302455310000126788659998787678899999848868998998778899 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 874378999999999999876 Q gi|254780603|r 259 IIKALNVSNAAAVALYITQNH 279 (282) Q Consensus 259 ~~~SLNvs~a~ai~l~~~~~~ 279 (282) ++||||||+|+||+|||+.|| T Consensus 236 ~veSLNva~A~aI~lyE~~Rq 256 (257) T 2i6d_A 236 HTESLNVAIATAILCSEWRRR 256 (257) T ss_dssp --CCCCHHHHHHHHHHHHHHT T ss_pred CCCCEEHHHHHHHHHHHHHHC T ss_conf 987310999999999999856 No 6 >2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Probab=100.00 E-value=2e-43 Score=267.01 Aligned_cols=148 Identities=22% Similarity=0.368 Sum_probs=135.2 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHH Q ss_conf 5068872343206889999999864200110013686320000013444333321101222--32211222222210000 Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQT 209 (282) Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~--~~~~~~l~~~~~~~~~i 209 (282) .+++||||+|+||+|+|+|+|||+|||++.+++.+.+ +++++.+.|+|+|+++++++..+ .++.+++.+++..||++ T Consensus 25 ~~l~vvld~i~dP~NlG~IiRta~afGv~~viv~~~~-~~~~~~~~~~s~g~~~~i~~~~~~~~~~~~~l~~~k~~g~~v 103 (184) T 2ha8_A 25 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQ-CISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTI 103 (184) T ss_dssp CCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCGG-GGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHHTTCEE T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCC-CCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEE T ss_conf 9879998178880379999999998199779507644-568747776405531020211345146899999987559689 Q ss_pred HHCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 00012333-221122368988999758678987799985893999278968743789999999999998761 Q gi|254780603|r 210 IGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 (282) Q Consensus 210 ~~~~~~~~-~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~ 280 (282) ++++..++ .++.+++++++++||||+|++|||+++++.||..++|||.+.++|||||+|+||+|||+.||+ T Consensus 104 v~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IP~~~~~~SLNvs~A~aI~lye~~rq~ 175 (184) T 2ha8_A 104 IGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 175 (184) T ss_dssp EEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHH T ss_conf 873132455333211146885688676557889999985897999729699970259999999999999834 No 7 >1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Probab=100.00 E-value=3.1e-43 Score=265.89 Aligned_cols=150 Identities=23% Similarity=0.341 Sum_probs=138.0 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 66506887234320688999999986420011001368632000001344433332110122232211222222210000 Q gi|254780603|r 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 (282) Q Consensus 130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i 209 (282) +.++++|+||+|+||+|+|+|+|||+|||++.+++...++++++ ..++++|+.+++++..+.+..++++.+++.|+++ T Consensus 19 ~~~~~~vvld~v~~p~NlGaIiRta~afG~~~i~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~~i 96 (194) T 1v2x_A 19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT--FNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTV 96 (194) T ss_dssp CBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCC--CCSSCSSGGGTSEEEEESSHHHHHHHHHHTTCEE T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCH--HHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCEE T ss_conf 89998999967988465999999999749964303588667713--4431034431246999558999999999759825 Q ss_pred HHCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 000123-332211223689889997586789877999858939992789687437899999999999987614 Q gi|254780603|r 210 IGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282) Q Consensus 210 ~~~~~~-~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282) ++++.. +..++.+++++.+.+||||+|++|||+++++.||.+|+|||.+.++|||||+|+||+|||..||+. T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~lVfG~E~~Gls~e~l~~~d~~v~IPm~~~~~SLNvs~A~aI~lyE~~Rq~~ 169 (194) T 1v2x_A 97 YATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL 169 (194) T ss_dssp EEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHHHHHHH T ss_pred EECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH T ss_conf 4201222245401102688828997676788999999858979995899998632699999999999999776 No 8 >1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Probab=100.00 E-value=1.5e-42 Score=261.93 Aligned_cols=151 Identities=22% Similarity=0.299 Sum_probs=136.9 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 66506887234320688999999986420011001368632000001344433332110122232211222222210000 Q gi|254780603|r 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 (282) Q Consensus 130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i 209 (282) +.++++++||+|+||+|+|+|+|||+|||+++|++...... ..+...++++|+.+++++..+.++.+++..+++.|+++ T Consensus 22 ~~~~l~vvLd~i~~p~NiGaI~Rta~afG~~~v~l~~~~~~-~~~~~~~~s~gs~~~~~~~~~~~~~~~l~~~~~~~~~i 100 (211) T 1zjr_A 22 RQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGK-KAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQI 100 (211) T ss_dssp CEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTT-CCCCCHHHHTTGGGSSEEEECSCHHHHHHHHHHTTCEE T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC-CCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCEE T ss_conf 89998999958988437999999999858988999489888-62778888524410357999678899987654048448 Q ss_pred HHCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 0001233-32211223689889997586789877999858939992789687437899999999999987614 Q gi|254780603|r 210 IGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282) Q Consensus 210 ~~~~~~~-~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282) ++++.++ +.++.+++++++.+||||+|++|||+++++.||..|+|||.|.++|||||+|+||+|||+.||+. T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~lvfG~E~~GLs~e~l~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~Rqr~ 173 (211) T 1zjr_A 101 VATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQRE 173 (211) T ss_dssp EEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH T ss_conf 8740333332221245663069997676678999999857989997799999700499999999999998687 No 9 >3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} Probab=100.00 E-value=6.9e-39 Score=240.97 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=137.9 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC Q ss_conf 68872343206889999999864200110013686320000013444333321101222322112222222100000001 Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 (282) Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~ 213 (282) +-|+|++++||+|+|+|+|||++||++.|++.+.+.++.++++.++++|+++.+++....+....+..++..++++++++ T Consensus 6 ~~ivL~~p~~P~NiGaI~Rta~afGi~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160) T 3e5y_A 6 FNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFT 85 (160) T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCCGGGEEEEC T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHCCCCEEEEEE T ss_conf 79999489999839999999998499578526998640268999874162587645663218889988750583699973 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC--CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 23332211223689889997586789877999858--939992789687437899999999999987614 Q gi|254780603|r 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282) Q Consensus 214 ~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~--d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282) ..+...+++..++.+.+||||+|++|||+++++.| |++|+|||.+.++|||||+|+||+|||+.||.+ T Consensus 86 ~~~~~~~~~~~~~~k~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~~~~~SLNvsvAaaI~lyE~~Rq~~ 155 (160) T 3e5y_A 86 TRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAG 155 (160) T ss_dssp STTCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSSSCCCCHHHHHHHHHHHHHHHTT T ss_pred ECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEHHHHHHHHHHHHHHCCC T ss_conf 0123322112456523999804778899899986303232334799998716699999999999997618 No 10 >3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090} Probab=100.00 E-value=6.7e-39 Score=241.02 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=122.1 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-------------------CCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 50688723432068899999998642001100136863-------------------20000013444333321101222 Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-------------------PSESAVLAKSASGALEHIPYIRI 192 (282) Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~-------------------~~~~~~~~ras~Ga~~~l~~~~~ 192 (282) ..+.||||+++||+|+|+|+|||++||++.|++...++ ++++++++|+|+|+.+.++...+ T Consensus 16 ~~i~vVL~~~~~P~NlGaI~Rt~~~fG~~~l~lv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ga~~~l~~~~~ 95 (223) T 3ic6_A 16 GNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEI 95 (223) T ss_dssp GGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEE T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCCEEE T ss_conf 48699991798877499999999974998799974676664210122223554323567658899986364876282378 Q ss_pred -CCCCCCCCCCCCCCCHH----------HHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCC Q ss_conf -32211222222210000----------0001233322112236898899975867898779998589399927896874 Q gi|254780603|r 193 -SNLTDALQKMHSWGFQT----------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 (282) Q Consensus 193 -~~~~~~l~~~~~~~~~i----------~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~ 261 (282) .++.++++.+....... +.........+.+..++.+.+||||+|++||++++++.||.+++|||.+.++ T Consensus 96 ~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfGnE~~GLs~~~~~~~d~~v~IPm~~~~~ 175 (223) T 3ic6_A 96 VATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYF 175 (223) T ss_dssp ESCHHHHHTTEEEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECCCCCTTCC T ss_pred ECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCEECCCCCCCC T ss_conf 61499987531211111111135544201321000145555304777179976666687978988630011115899997 Q ss_pred HHHHHHHHHHHHHHHHHHHCC Q ss_conf 378999999999999876149 Q gi|254780603|r 262 ALNVSNAAAVALYITQNHFAK 282 (282) Q Consensus 262 SLNvs~a~ai~l~~~~~~~~~ 282 (282) |||||+|+||+|||++||+.+ T Consensus 176 SLNvS~A~aIvlyE~~rq~~~ 196 (223) T 3ic6_A 176 SLNLAQAVQVVCYEIFSQTDS 196 (223) T ss_dssp CCCHHHHHHHHHHHHHHTTTS T ss_pred CEEHHHHHHHHHHHHHHHHCC T ss_conf 327999999999999984268 No 11 >3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A* Probab=100.00 E-value=2.1e-38 Score=238.14 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=134.1 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCH Q ss_conf 50688723432068899999998642001100136863200000134443333211012223221122---222221000 Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL---QKMHSWGFQ 208 (282) Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l---~~~~~~~~~ 208 (282) .-+-|+|++++||+|+|+|+|||++||++++++.+.+.++.++.+.++++|..+.+++....+...+. +.....+++ T Consensus 3 ~~l~ivL~~p~~P~NlGaI~Rta~afGv~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (165) T 3n4j_A 3 AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPAR 82 (165) T ss_dssp CCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTT T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 63699996899998199999999976997894168654025189998837336532112100388888999873356427 Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 00001233322112236898899975867898779998589--39992789687437899999999999987614 Q gi|254780603|r 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282) Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282) +++++..+...+++++++.+.+||||+|++|||+++++.|| ++|+|||.+.++|||||+|+||+|||+.||++ T Consensus 83 i~~~~~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~d~~~~v~IP~~g~~~SLNvsvA~aI~lye~~RQ~~ 157 (165) T 3n4j_A 83 LFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 157 (165) T ss_dssp EEEECTTCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHHT T ss_pred EEEECCCCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHCC T ss_conf 886313221036663257661699735667899999985887639980499999865899999999999998049 No 12 >3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.30A {Bordetella pertussis} Probab=100.00 E-value=1.1e-38 Score=239.78 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=117.8 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----- Q ss_conf 5068872343206889999999864200110013686320--000013444333321101222322112222222----- Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIRISNLTDALQKMHS----- 204 (282) Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~--~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~----- 204 (282) ..+.+|||++|||+|+|+|+|||+|||+++|++.+.++++ +++++.++++|+.+.++.....+..+.+..... T Consensus 9 ~~i~vVL~~~~~P~NlGaIiRsa~afG~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173) T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVTLAFAL 88 (173) T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCSEEEEE T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEEEEEEECCHHHHHHHHCCCCCCH T ss_conf 86599992798987499999999982998899989977777887889873387604544421033299998520222100 Q ss_pred ------CCCHHHHCC--CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf ------100000001--233322112236898899975867898779998589399927896874378999999999999 Q gi|254780603|r 205 ------WGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 (282) Q Consensus 205 ------~~~~i~~~~--~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~ 276 (282) .+.+..... ......+.+..++.+.+||||+|++||++++++.||..|+|||.+.++|||||+|+||+|||+ T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~~~~~SLNvs~AaaI~lyEl 168 (173) T 3kty_A 89 TTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWEL 168 (173) T ss_dssp ECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCSTTCCCCHHHHHHHHHHHH T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEEHHHHHHHHHHHH T ss_conf 00012233432322343322233333214676289977756788989997479799941898998267899999999999 Q ss_pred HHHH Q ss_conf 8761 Q gi|254780603|r 277 QNHF 280 (282) Q Consensus 277 ~~~~ 280 (282) +|++ T Consensus 169 rra~ 172 (173) T 3kty_A 169 RYAL 172 (173) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9975 No 13 >3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides} Probab=100.00 E-value=1.3e-36 Score=227.99 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=124.1 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC Q ss_conf 68872343206889999999864200110013686320000013444333321101222322112222222100000001 Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 (282) Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~ 213 (282) .+|||+++++|+|+|+|+|+|++||++.+++.+.+++++++++.++|+|+.+.++.....+..+.+...+...+.+.+.. T Consensus 5 p~iVLv~p~~p~NiGai~R~~~~fG~~~l~lv~p~~~~~~~~~~~~a~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (249) T 3onp_A 5 PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDCDYVFATTARG 84 (249) T ss_dssp CEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTCSEEEEEESSC T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCHHEECEEEEECCHHHHHHHHCCHHHHHHHH T ss_conf 88999389998749999999998289989991898899988999884787322021136445999976300013222231 Q ss_pred CCCC-----------CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 2333-----------2211223689889997586789877999858939992789687437899999999999987614 Q gi|254780603|r 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282) Q Consensus 214 ~~~~-----------~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282) .... ......+++.+++||||+|+.||+++.++.||..++|||.+.++|||||+|++|+|||..||.. T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~kvalVFG~E~~GLs~e~l~~cd~~v~IP~~~~~~SLNls~AvaIvlyEl~r~~~ 163 (249) T 3onp_A 85 RELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHD 163 (249) T ss_dssp CCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTTCCCCCHHHHHHHHHHHHHHC-- T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHC T ss_conf 3578641001134677787650477659999478778887887402518983489998861599999999999999841 No 14 >3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae} Probab=100.00 E-value=1.7e-34 Score=215.75 Aligned_cols=143 Identities=18% Similarity=0.194 Sum_probs=113.8 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHH Q ss_conf 5068872343206889999999864200110013686320000013444333321101222-322112222222100000 Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHSWGFQTI 210 (282) Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~-~~~~~~l~~~~~~~~~i~ 210 (282) ..+.|||+++|+|+|+|+|+|||++||++++++...+ +++++++++|+|+.+.++...+ .++.+++..+... + T Consensus 6 ~~i~iVL~~p~~p~NiGai~Rs~~~fG~~~L~lV~p~--~~~~~a~~~a~ga~~~l~~~~~~~~~~~~~~~~~~~----~ 79 (244) T 3ilk_A 6 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLV----I 79 (244) T ss_dssp TTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCSEE----E T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC--CCCHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHH----H T ss_conf 3989999489886769999999998099979993899--989799997475411237579984066666667788----8 Q ss_pred HCCCC-----------CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 00123-----------3322112236898899975867898779998589399927896874378999999999999876 Q gi|254780603|r 211 GLSSD-----------SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 (282) Q Consensus 211 ~~~~~-----------~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~ 279 (282) +++.. .+.......++++++||||+|+.||+.+.++.||..|+|||.+.++|||||+|++|+|||++++ T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ialvfG~E~~GLs~~~l~~~d~~v~IP~~~~~~SLNls~AvaIvlYEl~~~ 159 (244) T 3ilk_A 80 GTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMA 159 (244) T ss_dssp EECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHH T ss_conf 99876422564436878742232036886488616666899768761556069855899983232899999999999998 Q ss_pred H Q ss_conf 1 Q gi|254780603|r 280 F 280 (282) Q Consensus 280 ~ 280 (282) . T Consensus 160 ~ 160 (244) T 3ilk_A 160 F 160 (244) T ss_dssp H T ss_pred H T ss_conf 7 No 15 >3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Probab=99.66 E-value=5.8e-17 Score=115.33 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=97.8 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCC----------C-HHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC-CC-- Q ss_conf 06889999999864200110013686320----------0-0001344433332110122-23221122222221-00-- Q gi|254780603|r 143 DPHNIGAILRSAVAFSCDGIITTKRYSPS----------E-SAVLAKSASGALEHIPYIR-ISNLTDALQKMHSW-GF-- 207 (282) Q Consensus 143 dp~NlG~I~Rta~a~g~~~vil~~~~~~~----------~-~~~~~ras~Ga~~~l~~~~-~~~~~~~l~~~~~~-~~-- 207 (282) -+.|+|.|.|+|..||++.+++.....++ | +.+..+.+.|+.+-+.-.+ ++++.++++.+... |. T Consensus 27 tnldihdIARamkn~Gl~~l~lV~P~~~q~~l~~~~~~~W~~~~a~~~a~~a~dvL~~akV~~sLeeAl~d~~~~~g~s~ 106 (192) T 3dcm_X 27 TNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERP 106 (192) T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHHHHHHHSSCC T ss_pred CCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHCEEECCHHHHHHHHHHHCCCCC T ss_conf 46547999999986799727996762677888988875077704555088989998218786889999987887528862 Q ss_pred HHHHCCCCCCC---CCCC-----CCCCCCEEEEECCCCCCCCHHHHHHCCCEEE-ECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 00000123332---2112-----2368988999758678987799985893999-278968743789999999999998 Q gi|254780603|r 208 QTIGLSSDSKK---PLEQ-----EIKNDKIALILGAEGKGLRPKTQETATSMAH-LHMPGIIKALNVSNAAAVALYITQ 277 (282) Q Consensus 208 ~i~~~~~~~~~---~~~~-----~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~-Ip~~~~~~SLNvs~a~ai~l~~~~ 277 (282) .+++++..... ++.+ ....++++|+|| |+.||+.+.++.||..+. ||+++...|||||+|++|+|+++. T Consensus 107 ~vvaTsar~r~~~~~~~e~~~~l~~~~~~valvFG-E~~GLtneeL~~cd~iL~~Ip~~~~y~sLNvs~AvaIildrl~ 184 (192) T 3dcm_X 107 LIFFTSAKKRENDISFEEGRRIIIETEKPVLILLG-TGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLI 184 (192) T ss_dssp EEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEEC-CTTCCCHHHHTTCSEEBCCTTTTSSCCCCCHHHHHHHHHHHHT T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 68604566578998999999998733881899934-7779999999853977863579999983079999999999985 No 16 >2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii} Probab=96.88 E-value=0.0032 Score=36.65 Aligned_cols=123 Identities=20% Similarity=0.151 Sum_probs=79.1 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC Q ss_conf 2068899999998642001100136863200---0001344433332110122232211222222210000000123332 Q gi|254780603|r 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSE---SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 (282) Q Consensus 142 ~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~---~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 218 (282) +|+.=.--+.=||-|||+++++++... |+- +-.-+-..=|.-|.+.+ ..++..+ +++.+-.++.+++-|. T Consensus 13 RDkRiTTHV~LtARAfGA~~i~l~~~~-D~~v~etv~~V~~rwGG~F~ve~--~~~~~~~---ik~~~G~vVHLTMYG~- 85 (201) T 2yy8_A 13 RDKRVTTHVALTARAFGADGIIIASEE-DEKVKESVEDVVKRWGGPFFIEF--NRNWRKV---MKEFTGVKVHLTMYGL- 85 (201) T ss_dssp -CTHHHHHHHHHHHHTTCSEEEESSSC-CHHHHHHHHHHHHHHCSCCBCCB--CSCHHHH---HHHCCSEEEEEEEEEE- T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHHHCCCCEEEEE--CCCHHHH---HHHCCCEEEEEECCCC- T ss_conf 675225688899987168758974788-73699999999985299669997--4688999---9865997999844787- Q ss_pred CCC----C----CCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 211----2----2368988999758678987799985893999278968743789999999999998 Q gi|254780603|r 219 PLE----Q----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 (282) Q Consensus 219 ~~~----~----~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~ 277 (282) ++. + ..-.++..+|+|.|- +|.++-+.||+.|.|--...-| -.|.||+|-.+. T Consensus 86 ~i~dvi~~Ir~~~~~~~~iLVVVGaeK--VP~evYelADyNVaVgNQPHSE----VAALAIFLDrl~ 146 (201) T 2yy8_A 86 HVDDVIEELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----VAALAVLLDRLL 146 (201) T ss_dssp EHHHHHHHHHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCH----HHHHHHHHHHHT T ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCHHH----HHHHHHHHHHHH T ss_conf 602677988752556885899978885--9989983367525547887289----999999999870 No 17 >2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8 Probab=96.77 E-value=0.0021 Score=37.67 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=80.8 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC Q ss_conf 20688999999986420011001368632000001344---433332110122232211222222210000000123332 Q gi|254780603|r 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS---ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 (282) Q Consensus 142 ~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ra---s~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 218 (282) +|+.=.--+.=||-|||++++++... |+--...++. .=|.-|.+. . .++.+.+++.+-.++-+++-|.. T Consensus 16 RD~RiTTHv~LtARAfGA~~i~l~~~--D~~v~etv~~V~~rwGG~F~v~-----~-~~w~~~ik~~~G~vVHLTMYG~~ 87 (178) T 2o3a_A 16 RDKRISTHVALTARAFGAKGIYFDTE--DKSVFESVRDVVERWGGDFFIK-----A-VSWKKLLREFDGLKVHLTMYGIP 87 (178) T ss_dssp -CHHHHHHHHHHHHHTTCSEEEESSC--CHHHHHHHHHHHHHHCSCCEEE-----E-CCHHHHHHHCCSEEEEEEEEEEE T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCC--CHHHHHHHHHHHHHCCCCEEEE-----E-CCHHHHHHHCCCEEEEECCCCCC T ss_conf 67522468889998716976897177--7368898999997229932899-----6-48999987559989996578986 Q ss_pred ---CCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf ---2112236898899975867898779998589399927896874378999999999999 Q gi|254780603|r 219 ---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 (282) Q Consensus 219 ---~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~ 276 (282) -+.++.-.++..+|+|.|- +|.++-+.||+.|.|--...-| | .|.||+|-.+ T Consensus 88 i~~~i~~Ir~~~~ilvVVGaeK--VP~evYe~ADyNVaVgNQPHSE---V-AALAiFLDrl 142 (178) T 2o3a_A 88 LPQKLEEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSE---V-AALAVFLDRV 142 (178) T ss_dssp HHHHHHHHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCH---H-HHHHHHHHHH T ss_pred HHHHHHHHCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCHHH---H-HHHHHHHHHH T ss_conf 4677766304696699988884--9989973267425637988289---9-9999999986 No 18 >2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7 Probab=96.02 E-value=0.0037 Score=36.29 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=82.1 Q ss_pred CCCEEEEECCCC-------CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 650688723432-------0688999999986420011001368632000001344433332110122232211222222 Q gi|254780603|r 131 NSQLLMVLDHVN-------DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 (282) Q Consensus 131 ~~~~~i~ld~i~-------dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~ 203 (282) +++..|-+++-. |-.+++..++.|..-... +.......++.|- ++...++.+.++.+. T Consensus 67 ~p~r~I~f~G~~l~~l~p~dErsia~~I~kaL~~~~~----------~~~~~~~e~~pGi-----~v~~~~fe~~l~e~~ 131 (208) T 2qwv_A 67 DYSRTITVEANEISDVGGFHEAALIALLVKALDASVG----------MGKEQTRVVQPGL-----TVRTISFEALLGELA 131 (208) T ss_dssp SSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTT----------CCTTCEEEEETTE-----EEECCCHHHHHHHHH T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC----------CCCCCEEEECCCE-----EEECCCHHHHHHHHH T ss_conf 9975899955534788965089999999998746468----------8876327857998-----994889999999986 Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC----CEEEECCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 2100000001233322112236898899975867898779998589----399927896874378999999999999876 Q gi|254780603|r 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 (282) Q Consensus 204 ~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d----~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~ 279 (282) .++++|-++.+|. ++.+..++.+.+||+| -..|++++-.+... ..|++ +-.+|=.+++.+|+-|++.|| T Consensus 132 -e~~~i~~Lde~G~-~i~~~~~~~~~~FILg-Dh~~l~~~e~~~L~~~~~~~iSl----Gp~~L~a~hcI~ivh~~LDr~ 204 (208) T 2qwv_A 132 -EHHSLYMMDKKGD-SIRDIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQCVTLIHNEIDHQ 204 (208) T ss_dssp -TTSEEEEEEEEEE-ETTTSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHHHHHHHHHHHHHH T ss_pred -CCCCEEEECCCCC-CHHHCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCCEEEE----CCHHHHHHHHHHHHHHHHHCC T ss_conf -4797899878998-3422568999879970-89998978999998718823754----708888778999999987202 Q ss_pred HC Q ss_conf 14 Q gi|254780603|r 280 FA 281 (282) Q Consensus 280 ~~ 281 (282) -+ T Consensus 205 ~~ 206 (208) T 2qwv_A 205 EA 206 (208) T ss_dssp HH T ss_pred CC T ss_conf 03 No 19 >1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A* Probab=94.37 E-value=0.15 Score=27.04 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=66.5 Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCC--CHHH---HHHHHHHHHH-----HHC-CCCCCCCCCCCCC Q ss_conf 8872343206889999999864200110--013686320--0000---1344433332-----110-1222322112222 Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPS--ESAV---LAKSASGALE-----HIP-YIRISNLTDALQK 201 (282) Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~--~~~~---~~ras~Ga~~-----~l~-~~~~~~~~~~l~~ 201 (282) +.++-.+-.|.++-.|++-|.-+|++.+ +.++++... +..+ .-+....|.. ++| +....++.++++. T Consensus 73 i~l~~~l~k~~~~e~il~k~tELGV~~I~p~~sers~~~~~~~~k~~R~~~ii~~A~~Qsgr~~lP~I~~~~~~~~~~~~ 152 (228) T 1v6z_A 73 VVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQV 152 (228) T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCCC T ss_pred EEEEEECCCCHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH T ss_conf 58997302807899999998843117999970034421222011021378999999996499446621476477888765 Q ss_pred CCCCCCHHHHCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 2221000000012333-22112236898899975867898779998589--399927896874378999999999 Q gi|254780603|r 202 MHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVAL 273 (282) Q Consensus 202 ~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~a~ai~l 273 (282) . ...++ ..... ..........++.+++|.|| |.+++-++... ....+-+..++ |=+-+|+-.++ T Consensus 153 ~---~~~~~--~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~Ei~~~~~~~~~~v~LG~~I--LR~ETA~i~al 219 (228) T 1v6z_A 153 A---QGLVA--HVGATARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRRI--LRAETAALALL 219 (228) T ss_dssp S---SEEEE--CTTCCCCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHHHHTEEEECCCSSC--CCHHHHHHHHH T ss_pred H---HHHHH--HCCCCCCCCCCCCCCCEEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CHHHHHHHHHH T ss_conf 4---44332--00222232312356760699967987-889999999997898897679982--45785999999 No 20 >2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 Probab=93.99 E-value=0.025 Score=31.52 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=79.7 Q ss_pred CCCEEEEECCC------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 65068872343------206889999999864200110013686320000013444333321101222322112222222 Q gi|254780603|r 131 NSQLLMVLDHV------NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 (282) Q Consensus 131 ~~~~~i~ld~i------~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~ 204 (282) .++..|.+++- -|=.+++..++.|..- +.. ..-.+++.|- +....++.+.++.+. T Consensus 62 ~p~r~i~f~G~~lk~l~pdErSia~~I~kaL~~-------~~~------~~~~e~~pGi-----~v~~~~~e~~l~e~~- 122 (197) T 2qmm_A 62 SPPKSILIKGDEVRRMSPDERNVAGHIKKALAV-------ECG------KSWKKVHSGV-----YVSRKGLEELIEELS- 122 (197) T ss_dssp SCCEEEEEETTTCCSCCSSHHHHHHHHHHHHHS-------CCC------SSCEEEETTE-----EEECCCHHHHHHHHH- T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC-------CCC------CCCEEECCCE-----EEECCCHHHHHHHHH- T ss_conf 997368984622456781278999999998555-------878------7604534898-----991889999999987- Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH----CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 1000000012333221122368988999758678987799985----89399927896874378999999999999876 Q gi|254780603|r 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 (282) Q Consensus 205 ~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~----~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~ 279 (282) .++.+|-++.+|. ++.+..++.+.++|+|-- .|++++-.+. ....+++ +-.+|=.+++.+|+-|++.|- T Consensus 123 ~~~~~~~L~e~G~-~i~~~~~~~~~~FiL~Dh-~~l~~~e~~~L~~~~~~~iSL----Gp~~L~a~hcI~ivh~~LDr~ 195 (197) T 2qmm_A 123 EKYSIIYLKEDGV-DISNAQLPPNPLFVIGDH-EGLTEEQEKVVERYAALKLSL----SPLSLLAEQCVVIAHHHLDRL 195 (197) T ss_dssp HHSEEEEEEEEEE-EGGGSCCCSSEEEEEECT-TCCCHHHHHHHHTTCSEEEEC----CSSCCCHHHHHHHHHHHHHHH T ss_pred CCCCEEEECCCCC-CCCCCCCCCCCEEEEECC-CCCCHHHHHHHHHCCCEEEEC----CCCCCCHHHHHHHHHHHHHHC T ss_conf 3895899878797-612345799987997289-998877999886517703651----641016346696999988651 No 21 >1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A Probab=93.19 E-value=0.13 Score=27.34 Aligned_cols=137 Identities=13% Similarity=0.197 Sum_probs=69.5 Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHHH------------HHHHHHHH-HHHHCCC-CCCCCCCC Q ss_conf 8872343206889999999864200110--0136863200000------------13444333-3211012-22322112 Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAV------------LAKSASGA-LEHIPYI-RISNLTDA 198 (282) Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~~~~------------~~ras~Ga-~~~l~~~-~~~~~~~~ 198 (282) +.++-.+-.|.++-.|++-|.-+|++.+ +.++++...++.. ++.|+.-+ -.++|-. ...++.++ T Consensus 82 i~l~~~l~K~~~~~~il~k~tELGV~~I~p~~s~rs~~~~~~~~~~~k~~r~~~I~~eA~eQsgr~~lP~I~~~~~l~~~ 161 (257) T 1vhy_A 82 IHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDW 161 (257) T ss_dssp EEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHH T ss_pred EEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH T ss_conf 89998402338899999999974876899997102335465667887699999999999986599767865410038999 Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCC--CCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHH----HHH Q ss_conf 2222221000000012333221122--36898899975867898779998589--399927896874378999----999 Q gi|254780603|r 199 LQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSN----AAA 270 (282) Q Consensus 199 l~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~----a~a 270 (282) +...... ..+.....+...+.+. ...+++.+++|.|| |.+++-++... ....+.+..++ |=+.+ |.| T Consensus 162 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~vsLG~~I--LR~ETA~i~als 236 (257) T 1vhy_A 162 CAENDGA--LKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILLGKRV--LRTETASLAAIS 236 (257) T ss_dssp HTCCSSC--EEEEECTTCCCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSC--CCHHHHHHHHHH T ss_pred HHHCCCC--CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CHHHHHHHHHHH T ss_conf 8615444--21011024444566665303686589985777-889899999998798783268981--668879999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780603|r 271 VALYIT 276 (282) Q Consensus 271 i~l~~~ 276 (282) +++|.. T Consensus 237 ~~~~~~ 242 (257) T 1vhy_A 237 ALQICF 242 (257) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999984 No 22 >1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5 Probab=91.98 E-value=0.094 Score=28.20 Aligned_cols=141 Identities=13% Similarity=0.221 Sum_probs=75.3 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCC------------HHHHHHHHHHH-HHHHC-CCCCCCCCC Q ss_conf 68872343206889999999864200110--0136863200------------00013444333-32110-122232211 Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSE------------SAVLAKSASGA-LEHIP-YIRISNLTD 197 (282) Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~------------~~~~~ras~Ga-~~~l~-~~~~~~~~~ 197 (282) .+.++-.+-.|.++--|++.|.-.|++.+ +.++++...+ ...++.|+.=+ -.++| +....++.+ T Consensus 82 ~i~L~~~l~k~~~~e~ii~katELGV~~I~p~~sers~~~~~~~~~~~k~eR~~~ii~eA~eQsgr~~lP~I~~~~~l~~ 161 (268) T 1vhk_A 82 KVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQ 161 (268) T ss_dssp EEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHH T ss_pred CEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHH T ss_conf 25799842167528889988783272567810103012212220556409999999999999719998767974369999 Q ss_pred CCCCCCCCCCHHHHCCCCCCC--------CCCCCCCCCCEEEEECCCCCCCCHHHHHH---CCCEEEECCCCC---CCHH Q ss_conf 222222210000000123332--------21122368988999758678987799985---893999278968---7437 Q gi|254780603|r 198 ALQKMHSWGFQTIGLSSDSKK--------PLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMAHLHMPGI---IKAL 263 (282) Q Consensus 198 ~l~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~---~d~~v~Ip~~~~---~~SL 263 (282) +++........++..+..... ...+..-.+++++++|.|| |.++.-++. +. ...+.+..+ +|. T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~IGPEG-Gfs~~Ei~~l~~~g-~~~v~LG~~ILR~ET- 238 (268) T 1vhk_A 162 LLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQD-GVTCGLGPRILRTET- 238 (268) T ss_dssp HHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTT-CEEECCCSSCCCTTT- T ss_pred HHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCCHHHHHHHHHCC-CEEEECCCCCCHHHH- T ss_conf 997286679489974200234424678888764347981999983898-89999999999789-999778998145774- Q ss_pred HHHHHHHHHHHHHH Q ss_conf 89999999999998 Q gi|254780603|r 264 NVSNAAAVALYITQ 277 (282) Q Consensus 264 Nvs~a~ai~l~~~~ 277 (282) =+-+|.++++|+.- T Consensus 239 A~i~als~i~~~~~ 252 (268) T 1vhk_A 239 APLYALSAISYQTE 252 (268) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999988 No 23 >2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A* Probab=90.43 E-value=0.77 Score=22.99 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=66.2 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHH----------HHHHHHHHH-HHHHC-CCCCCCCCC Q ss_conf 5068872343206889999999864200110--013686320000----------013444333-32110-122232211 Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESA----------VLAKSASGA-LEHIP-YIRISNLTD 197 (282) Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~~~----------~~~ras~Ga-~~~l~-~~~~~~~~~ 197 (282) ..+.+++--+..+..+=.|++-|.-+|++.+ +.++++...+.. -++.|+.=+ -.++| +....++.+ T Consensus 71 ~~i~l~~~~~k~~~~~e~ilek~tELGV~~i~p~~sers~~~~~~~~~k~eR~~~ii~eA~~Qs~r~~~p~i~~~~~l~~ 150 (229) T 2egv_A 71 KDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSD 150 (229) T ss_dssp SEEEEEEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEGGG T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH T ss_conf 74289983211045799999998881822999874330210137787789999999999861215677875324567999 Q ss_pred CCCCCCCCCCHHHHCC-CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC--CCEEEECCCCCCCHHHHHHHH Q ss_conf 2222222100000001-23332211223689889997586789877999858--939992789687437899999 Q gi|254780603|r 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAA 269 (282) Q Consensus 198 ~l~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~--d~~v~Ip~~~~~~SLNvs~a~ 269 (282) ++..... .++... ..+..........++.++++|.|| |.+++-++.. .....+.+..++ |=+-+|+ T Consensus 151 ~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~IGPEG-Gfs~~E~~~l~~~g~~~v~LG~~I--LR~ETA~ 219 (229) T 2egv_A 151 LIPESEE---NIILDNFYEGVKPKDVNLEAKTYSVVVGPEG-GFSKRESQILREKGFKSVLLEPYT--LRTETAV 219 (229) T ss_dssp CCCCSSE---EEEECTTSCCBCGGGSCTTCSEEEEEECCTT-CCCHHHHHHHHHTTCEEECCSSSC--CCHHHHH T ss_pred HHHHCCC---CHHHHHHHHCCCCHHHHHCCCCCEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CCHHHHH T ss_conf 9853431---1111223310352123320254158980788-999999999998799897669982--5177599 No 24 >3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} Probab=83.17 E-value=2 Score=20.56 Aligned_cols=128 Identities=11% Similarity=0.219 Sum_probs=63.8 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC--CCCC------CCCCHHHHHHHHHHH-HHHHCCC-CCCCCCCCCCC Q ss_conf 506887234320688999999986420011001--3686------320000013444333-3211012-22322112222 Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT--TKRY------SPSESAVLAKSASGA-LEHIPYI-RISNLTDALQK 201 (282) Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil--~~~~------~~~~~~~~~ras~Ga-~~~l~~~-~~~~~~~~l~~ 201 (282) ..+.+++--+..+.-+-.|++.|.-+|++.++. ++++ .+-|...++.|+.=+ -.++|-. ...++.+++.. T Consensus 77 ~~i~l~~a~~k~~~r~d~ilqk~tELGV~~I~p~~s~~s~~~~~~~~R~~~i~~ea~eQs~r~~~P~I~~~~~l~~~l~~ 156 (257) T 3kw2_A 77 DRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIAD 156 (257) T ss_dssp SCEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHHHHHECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHH T ss_conf 64899972444410799998787761844899511232033203788999999999997275538677155489999974 Q ss_pred CCCCCCHHHHCCCCC-C-------C-CCCCCCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCC Q ss_conf 222100000001233-3-------2-2112236898899975867898779998589--39992789687 Q gi|254780603|r 202 MHSWGFQTIGLSSDS-K-------K-PLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGII 260 (282) Q Consensus 202 ~~~~~~~i~~~~~~~-~-------~-~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~ 260 (282) +......++...... . . ........+++++++|.|| |.++.-++... ....+-+...+ T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~l~~~g~~~vsLG~~I 225 (257) T 3kw2_A 157 TPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALLAGFAPVSLGESR 225 (257) T ss_dssp SCTTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHHHTCEEECCCSSC T ss_pred CCCCCCCEECHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC T ss_conf 701242120001320002233200121134236881799988998-999999999998799898679982 No 25 >1z85_A Hypothetical protein TM1380; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.12A {Thermotoga maritima MSB8} Probab=79.75 E-value=2.7 Score=19.85 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=70.0 Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCHH----HHHHHHHHHH--HHHCCCCCCCCCCCCCCCCCCC Q ss_conf 88723432068899999998642001100--13686320000----0134443333--2110122232211222222210 Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESA----VLAKSASGAL--EHIPYIRISNLTDALQKMHSWG 206 (282) Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~vi--l~~~~~~~~~~----~~~ras~Ga~--~~l~~~~~~~~~~~l~~~~~~~ 206 (282) +-++-.+-.+..+-.+++-|.-.|++.++ .++.+...++. +.+++|+==. .++|-. ++++.....+ T Consensus 87 i~l~~~l~K~~~~e~il~k~tELGV~~i~p~~~~rs~~~~k~~r~~~i~~~A~eQsgr~~lP~I------~~~~~~~~~~ 160 (234) T 1z85_A 87 LSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKV------SFLEKLEFSG 160 (234) T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCCCCHHHHHHHHHHHHHHHTCSBCCEE------EECCSCCCCS T ss_pred EEEEECCCCCCHHHHHHHHHHCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE------CHHHHCHHCC T ss_conf 8999712532037999987652699999971234422000388999999986753188658876------6454140028 Q ss_pred CHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCC-EEEECCCCC-CCHHH-HHHHHHHHHHHHH Q ss_conf 00000012333221122368988999758678987799985893-999278968-74378-9999999999998 Q gi|254780603|r 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGI-IKALN-VSNAAAVALYITQ 277 (282) Q Consensus 207 ~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~-~v~Ip~~~~-~~SLN-vs~a~ai~l~~~~ 277 (282) .++.++..+...+.+....++.++++|.|| |.+++-.+.... ...+.+... -++=. +-+|+++++|..+ T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~E~~~~~~~~~~v~LG~~ILR~ETA~i~als~i~~~~~ 232 (234) T 1z85_A 161 -NVITLDLDASQNLLDANLEGSITVVVGPEG-GFSEKERELLRSSTTIVSLGKKILRFETAAILTVGYIALKKQ 232 (234) T ss_dssp -EEEEECC---CCCSSSCCCSSEEEEECCTT-CCCHHHHHHHHHHSEEC------CCHHHHHHHHHHHHHHHTT T ss_pred -CCEEEECCHHHHHCCCCCCCCEEEEECCCC-CCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHC T ss_conf -836641201221000023684499989988-999999999984998987899823367299999999999853 No 26 >1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} SCOP: c.116.1.3 Probab=72.56 E-value=3.7 Score=19.07 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=45.4 Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCC----------CC-CCCEEEEECCCCCCCCHHHHHHCCCEEEE-CCCCCCCHHHHH Q ss_conf 2222221000000012333221122----------36-89889997586789877999858939992-789687437899 Q gi|254780603|r 199 LQKMHSWGFQTIGLSSDSKKPLEQE----------IK-NDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVS 266 (282) Q Consensus 199 l~~~~~~~~~i~~~~~~~~~~~~~~----------~~-~~~~~lv~G~E~~Gl~~~~~~~~d~~v~I-p~~~~~~SLNvs 266 (282) ++.++... .++.+|..|.. ++.. +. ..+.+|++|.- .|+++++.+.||..+++ ||. +.=. T Consensus 66 l~~i~~~~-~~I~LDe~Gk~-~sS~~fA~~i~~~~~~g~~~i~FiIGGa-~G~~~~~~~~a~~~lSls~mT-----fpH~ 137 (161) T 1vh0_A 66 LAKIKPQS-TVITLEIQGKM-LSSEGLAQELNQRMTQGQSDFVFVIGGS-NGLHKDVLQRSNYALSFSKMT-----FPHQ 137 (161) T ss_dssp HHTSCTTS-EEEEEEEEEEC-CCHHHHHHHHHHHHHTTCCEEEEEECBT-TBCCHHHHHHCSEEECSCSSC-----CCHH T ss_pred HHHHCCCC-EEEEEECCCCC-CCCHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHCCCEEECCCCC-----CCHH T ss_conf 98618998-79999589888-8869999999999974997489994687-554879998538878756898-----7489 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999876 Q gi|254780603|r 267 NAAAVALYITQNH 279 (282) Q Consensus 267 ~a~ai~l~~~~~~ 279 (282) .|.-|++-+++|- T Consensus 138 lar~~l~EQlYRa 150 (161) T 1vh0_A 138 MMRVVLIEQVYRA 150 (161) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 27 >1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3 Probab=68.14 E-value=5.4 Score=18.14 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=43.4 Q ss_pred CCHHHHCCCCCCC----CC----CC--CCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEC-CCCCCCHHHHHHHHHHHHH Q ss_conf 0000000123332----21----12--236898899975867898779998589399927-8968743789999999999 Q gi|254780603|r 206 GFQTIGLSSDSKK----PL----EQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALY 274 (282) Q Consensus 206 ~~~i~~~~~~~~~----~~----~~--~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip-~~~~~~SLNvs~a~ai~l~ 274 (282) +..++.+|..|.. .+ .+ ..-...++|++|.- .|+++.+++.||..+++- |+ +.=..|.-|++- T Consensus 70 ~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa-~G~~~~~~~~a~~~lSls~mT-----~pH~larv~L~E 143 (167) T 1to0_A 70 DAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGS-LGLSDTVMKRADEKLSFSKMT-----FPHQLMRLILVE 143 (167) T ss_dssp TSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCS-SCCCHHHHHHCSEEEESCSSC-----CCHHHHHHHHHH T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHCCCEEECCCCC-----CCHHHHHHHHHH T ss_conf 98799981899753899999999999865996289996688-888988996268577657888-----618999999999 Q ss_pred HHHHH Q ss_conf 99876 Q gi|254780603|r 275 ITQNH 279 (282) Q Consensus 275 ~~~~~ 279 (282) +++|- T Consensus 144 QlYRa 148 (167) T 1to0_A 144 QIYRA 148 (167) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 28 >1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 Probab=57.28 E-value=5.9 Score=17.92 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=43.7 Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCC----------CCCCEEEEECCCCCCCCHHHHHHCCCEEEE-CCCCCCCHHHHHH Q ss_conf 22222210000000123332211223----------689889997586789877999858939992-7896874378999 Q gi|254780603|r 199 LQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSN 267 (282) Q Consensus 199 l~~~~~~~~~i~~~~~~~~~~~~~~~----------~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~I-p~~~~~~SLNvs~ 267 (282) ++.++. +-.++.+|..|.. ++... -..+.+||+|.- .|+++++.+.+|..+++ ||+ |.=.. T Consensus 59 l~~i~~-~~~vI~LDe~Gk~-~sS~~fA~~L~~~~~~g~~i~FvIGGa-~Gl~~~~~~~a~~~lSlS~mT-----~pH~l 130 (163) T 1o6d_A 59 TNRILP-GSFVMVMDKRGEE-VSSEEFADFLKDLEMKGKDITILIGGP-YGLNEEIFAKAHRVFSLSKMT-----FTHGM 130 (163) T ss_dssp HTTCCT-TCEEEEEEEEEEE-CCHHHHHHHHHHHHHHTCCEEEEECCT-TCCCGGGGGGCSEEEECCSSC-----CCHHH T ss_pred HHCCCC-CCEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECC-CCCCHHHHHHHCCEEECCCCC-----CHHHH T ss_conf 950799-9889997478787-786999999999983688569999678-887999998618689568888-----61899 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999876 Q gi|254780603|r 268 AAAVALYITQNH 279 (282) Q Consensus 268 a~ai~l~~~~~~ 279 (282) |.-|++-+++|- T Consensus 131 arv~L~EQiYRa 142 (163) T 1o6d_A 131 TVLIVLEQIFRA 142 (163) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 29 >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} Probab=56.32 E-value=2.6 Score=19.93 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=21.3 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf 068899999998642001100136863200000134443333211012 Q gi|254780603|r 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 (282) Q Consensus 143 dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~ 190 (282) ++.=+-.+.|.|.|+|++|+++..+ .+|-+.. ..+...+|+- T Consensus 205 ~r~~v~~la~aa~a~G~dGlfiE~H-p~P~~A~-----sD~~~~l~l~ 246 (262) T 1zco_A 205 RRSLVIPLAKAAYAIGADGIMVEVH-PEPEKAL-----SDSQQQLTFD 246 (262) T ss_dssp SGGGHHHHHHHHHHTTCSEEEEEBC-SSGGGCS-----SCTTTCBCHH T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCC-----CCCCCCCCHH T ss_conf 6767999999999829998999818-7802178-----8741367999 No 30 >2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} SCOP: c.116.1.6 PDB: 2v3k_A* Probab=53.82 E-value=9.9 Score=16.64 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=48.3 Q ss_pred CCCCCHHHHCCCCCCCC-C----CCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 22100000001233322-1----122368988999758678987799985893999278968743789999999999998 Q gi|254780603|r 203 HSWGFQTIGLSSDSKKP-L----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 (282) Q Consensus 203 ~~~~~~i~~~~~~~~~~-~----~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~ 277 (282) ...|..+++++..|... . ....-.++.++++|.=.+|=.....+..|+.++|-- .+|-.+++++-+++++- T Consensus 171 lp~~~r~I~LS~~G~~v~~~~~a~~l~~~~~i~~vIGafa~Gd~~~~~~yvde~ISISd----YpLSa~~v~sri~~~~E 246 (258) T 2v3j_A 171 LPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSN----YPLSASVACSKFCHGAE 246 (258) T ss_dssp SCSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSCCTTTTTTTCSCEEBSCS----SCCCHHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHCEEEEEEEC----CCHHHHHHHHHHHHHHH T ss_conf 78999899989987663799999873447987999813548985512000505899728----85419999999999999 Q ss_pred HH Q ss_conf 76 Q gi|254780603|r 278 NH 279 (282) Q Consensus 278 ~~ 279 (282) +. T Consensus 247 ~~ 248 (258) T 2v3j_A 247 DA 248 (258) T ss_dssp HH T ss_pred HH T ss_conf 98 No 31 >1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.10 c.116.1.2 Probab=39.97 E-value=12 Score=16.14 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=40.8 Q ss_pred CCCCCCCCCH-HHHCCCCCCCCCCCC--------CCCCCEEEEECCCCCCCCHHHHHHCCCEEE-ECCCC--CCCHHHHH Q ss_conf 2222221000-000012333221122--------368988999758678987799985893999-27896--87437899 Q gi|254780603|r 199 LQKMHSWGFQ-TIGLSSDSKKPLEQE--------IKNDKIALILGAEGKGLRPKTQETATSMAH-LHMPG--IIKALNVS 266 (282) Q Consensus 199 l~~~~~~~~~-i~~~~~~~~~~~~~~--------~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~-Ip~~~--~~~SLNvs 266 (282) .+.+...||- +++++..|. ++.+. .-.+...+|||+-..|+++- ..|..+. +|..| .++ .-=| T Consensus 175 ~~~~~~~gyd~~I~TS~~G~-~~~~~~~~~~~~~~~~~~~lvvFGgp~~Gl~e~---~~D~~lNt~P~QGsrtIR-tEEA 249 (268) T 1k3r_A 175 AESLKTVGADVVVATSRNAS-PITSILDEVKTRMRGAREAAILFGGPYKGLPEI---DADIWVNTLPGQCTETVR-TEEA 249 (268) T ss_dssp HHHHHHHCCSEEEEECTTSC-BTTTSHHHHHHHHTTCSEEEEECCCSSSCCCSC---CCSEEEBSSTTCSSSCCC-HHHH T ss_pred HHCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHH---HCCEEEECCCCCCCCCCH-HHHH T ss_conf 65642479986999899988-541001211224567870899989965576434---178589838998887661-8999 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999999999987614 Q gi|254780603|r 267 NAAAVALYITQNHFA 281 (282) Q Consensus 267 ~a~ai~l~~~~~~~~ 281 (282) +-.+..+...-++++ T Consensus 250 v~itLa~ln~~~~~~ 264 (268) T 1k3r_A 250 VLATLSVFNMLTQID 264 (268) T ss_dssp HHHHHHHHHHHTC-- T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999998188652 No 32 >3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus} Probab=38.47 E-value=13 Score=15.98 Aligned_cols=110 Identities=10% Similarity=-0.037 Sum_probs=62.3 Q ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHH---HCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 66506-88723432068899999998642---0011-0013686320000013444333321101222322112222222 Q gi|254780603|r 130 RNSQL-LMVLDHVNDPHNIGAILRSAVAF---SCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 (282) Q Consensus 130 ~~~~~-~i~ld~i~dp~NlG~I~Rta~a~---g~~~-vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~ 204 (282) +...+ |++-.++.||..+-.-++.|.+. |.+- |++..+.+...++... .++.-....++.++++.+++ T Consensus 14 ~~~~i~Iivt~Gp~d~~ra~~af~lA~~A~~~G~eV~iFl~~~gV~l~~~~~~-------~~~~~~~~~~l~e~l~~~~~ 86 (134) T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXGPXLLDXXWQ-------EEERXXGGNPFIHFFDMAXE 86 (134) T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGGGBHHHH-------HHHHHHCCCHHHHHHHHHHH T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHH-------HHHCCCCCCCHHHHHHHHHH T ss_conf 66369999946999879999999999999978992999996066988676643-------33134688899999999997 Q ss_pred CCCHHHHCCCCC-C-CCCCCCCCCCCEEEEECCCCCCCCH--HHHHHCCCEE Q ss_conf 100000001233-3-2211223689889997586789877--9998589399 Q gi|254780603|r 205 WGFQTIGLSSDS-K-KPLEQEIKNDKIALILGAEGKGLRP--KTQETATSMA 252 (282) Q Consensus 205 ~~~~i~~~~~~~-~-~~~~~~~~~~~~~lv~G~E~~Gl~~--~~~~~~d~~v 252 (282) .|..+++...-. . ..+.+-++.+ |-|-.|.+. ++...+|..+ T Consensus 87 ~Gv~i~vC~~~~~~~~gi~~~~l~~------g~~i~g~~~l~~~~~eaD~vl 132 (134) T 3mc3_A 87 NGVXMYVCVQSLXDMCHMXEDDVVE------GIELVGGSTLIDLTLEADRTL 132 (134) T ss_dssp TTCEEEEEHHHHHHTTCCCGGGBCT------TCEEECTHHHHHHHHHSSEEE T ss_pred CCCCEEEEHHHHHHHCCCCCCCCCC------CCEEECHHHHHHHHHHCCCEE T ss_conf 7980997268899848854212335------765508999999999629478 No 33 >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... Probab=36.63 E-value=5.9 Score=17.91 Aligned_cols=45 Identities=29% Similarity=0.509 Sum_probs=28.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 889999999864200110013686320000013444333321101222322 Q gi|254780603|r 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 (282) Q Consensus 145 ~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~ 195 (282) .-+-.+.|.|.++|++|+++.-+ .||-+. =..+.-.+++-...++ T Consensus 202 ~~v~~la~aA~a~G~dGl~iE~H-~dP~~A-----lsD~~q~l~~~~l~~l 246 (267) T 2nwr_A 202 EFIFPLIRAAVAVGCDGVFMETH-PEPEKA-----LSDASTQLPLSQLEGI 246 (267) T ss_dssp GGHHHHHHHHHHHCCSEEEEEEE-SCGGGC-----SSCTTTCEEGGGHHHH T ss_pred HHHHHHHHHHHHHCCCEEEEEEC-CCCCCC-----CCCCCCCCCHHHHHHH T ss_conf 66999999999839987999837-983436-----7860027799999999 No 34 >2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein structure initiative; 2.10A {Streptococcus pneumoniae TIGR4} SCOP: a.248.1.1 Probab=32.86 E-value=5.2 Score=18.21 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=27.0 Q ss_pred CCCCHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCCHHHHCC Q ss_conf 320000013444333321101---222322112222222100000001 Q gi|254780603|r 169 SPSESAVLAKSASGALEHIPY---IRISNLTDALQKMHSWGFQTIGLS 213 (282) Q Consensus 169 ~~~~~~~~~ras~Ga~~~l~~---~~~~~~~~~l~~~~~~~~~i~~~~ 213 (282) +..+.--..|-++|-...++- .+.-|+..+++.|.++||.++|.+ T Consensus 34 f~~l~~P~~~~t~gr~~TL~~aa~~~gidld~l~~~L~~~gf~v~g~d 81 (81) T 2fi0_A 34 FKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGYEVIGLD 81 (81) T ss_dssp CGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTCEEECCC T ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCEEECCC T ss_conf 975478278864220185999998849999999999998699730789 No 35 >3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei 1710B} Probab=31.13 E-value=23 Score=14.53 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 8899999998642 Q gi|254780603|r 145 HNIGAILRSAVAF 157 (282) Q Consensus 145 ~NlG~I~Rta~a~ 157 (282) +|+.+=+|....+ T Consensus 144 ~Ni~aR~R~~~ly 156 (285) T 3dpi_A 144 GNIKARERMIAQY 156 (285) T ss_dssp HHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHH T ss_conf 1579988878899 No 36 >2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Probab=27.65 E-value=21 Score=14.71 Aligned_cols=30 Identities=7% Similarity=-0.032 Sum_probs=18.8 Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 8872343206889999999864200110013686 Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 (282) Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~ 168 (282) +++|.....|.+ .|..+.-|++-++.+... T Consensus 231 v~IC~D~~~Pe~----~r~la~~GAdii~~Ps~~ 260 (405) T 2vhh_A 231 VNICYGRHHPQN----WMMFGLNGAEIVFNPSAT 260 (405) T ss_dssp ECCGGGGGCHHH----HHHHHHTTCSEEEEEECC T ss_pred EEECCCCCCHHH----HHHHHCCCCEEEEECCCC T ss_conf 876445555167----656421898199956877 No 37 >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* Probab=22.29 E-value=18 Score=15.17 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=7.8 Q ss_pred HHHHHHHHHHCCCCCCC Q ss_conf 99999864200110013 Q gi|254780603|r 149 AILRSAVAFSCDGIITT 165 (282) Q Consensus 149 ~I~Rta~a~g~~~vil~ 165 (282) .+.|.|.|+|++|+++. T Consensus 294 ~larAAvA~GaDGlfiE 310 (350) T 1vr6_A 294 PLSRAAIAVGAHGIIVE 310 (350) T ss_dssp HHHHHHHHHTCSEEEEE T ss_pred HHHHHHHHHCCCEEEEE T ss_conf 99999998299889997 Done!