Query gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 282
No_of_seqs 133 out of 4339
Neff 8.0
Searched_HMMs 23785
Date Tue May 31 18:09:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780603.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x7o_A Avirb, rRNA methyltrans 100.0 0 0 405.0 19.5 262 18-281 10-279 (287)
2 3nk6_A 23S rRNA methyltransfer 100.0 0 0 405.6 17.0 254 22-280 10-267 (277)
3 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 0 0 387.8 19.4 254 23-281 4-262 (274)
4 1gz0_A Hypothetical tRNA/RRNA 100.0 0 0 381.4 18.1 238 43-281 7-253 (253)
5 2i6d_A RNA methyltransferase, 100.0 0 0 386.7 12.2 242 27-279 7-256 (257)
6 2ha8_A TAR (HIV-1) RNA loop bi 100.0 2E-43 0 267.0 10.2 148 132-280 25-175 (184)
7 1v2x_A TRNA (GM18) methyltrans 100.0 3.1E-43 0 265.9 8.9 150 130-281 19-169 (194)
8 1zjr_A TRNA (guanosine-2'-O-)- 100.0 1.5E-42 0 261.9 9.7 151 130-281 22-173 (211)
9 3e5y_A TRMH family RNA methylt 100.0 6.9E-39 2.9E-43 241.0 9.6 148 134-281 6-155 (160)
10 3ic6_A Putative methylase fami 100.0 6.7E-39 2.8E-43 241.0 9.2 151 132-282 16-196 (223)
11 3n4j_A RNA methyltransferase; 100.0 2.1E-38 9E-43 238.1 11.3 150 132-281 3-157 (165)
12 3kty_A Probable methyltransfer 100.0 1.1E-38 4.7E-43 239.8 9.5 149 132-280 9-172 (173)
13 3onp_A TRNA/RRNA methyltransfe 100.0 1.3E-36 5.3E-41 228.0 10.3 148 134-281 5-163 (249)
14 3ilk_A Uncharacterized tRNA/RR 100.0 1.7E-34 7.3E-39 215.7 10.0 143 132-280 6-160 (244)
15 3dcm_X AdoMet, uncharacterized 99.7 5.8E-17 2.5E-21 115.3 5.8 134 143-277 27-184 (192)
16 2yy8_A ATRM56, UPF0106 protein 96.9 0.0032 1.3E-07 36.7 7.2 123 142-277 13-146 (201)
17 2o3a_A UPF0106 protein AF_0751 96.8 0.0021 8.8E-08 37.7 5.5 121 142-276 16-142 (178)
18 2qwv_A UPF0217 protein VC_A105 96.0 0.0037 1.5E-07 36.3 3.2 129 131-281 67-206 (208)
19 1v6z_A Hypothetical protein TT 94.4 0.15 6.3E-06 27.0 7.2 131 135-273 73-219 (228)
20 2qmm_A UPF0217 protein AF_1056 94.0 0.025 1E-06 31.5 2.6 124 131-279 62-195 (197)
21 1vhy_A Hypothetical protein HI 93.2 0.13 5.6E-06 27.3 5.2 137 135-276 82-242 (257)
22 1vhk_A Hypothetical protein YQ 92.0 0.094 4E-06 28.2 3.1 141 134-277 82-252 (268)
23 2egv_A UPF0088 protein AQ_165; 90.4 0.77 3.2E-05 23.0 8.3 132 132-269 71-219 (229)
24 3kw2_A Probable R-RNA methyltr 83.2 2 8.5E-05 20.6 6.2 128 132-260 77-225 (257)
25 1z85_A Hypothetical protein TM 79.7 2.7 0.00011 19.8 8.5 135 135-277 87-232 (234)
26 1vh0_A Hypothetical UPF0247 pr 72.6 3.7 0.00016 19.1 4.0 73 199-279 66-150 (161)
27 1to0_A Hypothetical UPF0247 pr 68.1 5.4 0.00023 18.1 5.3 68 206-279 70-148 (167)
28 1o6d_A Hypothetical UPF0247 pr 57.3 5.9 0.00025 17.9 2.6 73 199-279 59-142 (163)
29 1zco_A 2-dehydro-3-deoxyphosph 56.3 2.6 0.00011 19.9 0.7 42 143-190 205-246 (262)
30 2v3j_A Essential for mitotic g 53.8 9.9 0.00041 16.6 3.8 73 203-279 171-248 (258)
31 1k3r_A Conserved protein MT000 40.0 12 0.0005 16.1 2.0 78 199-281 175-264 (268)
32 3mc3_A DSRE/DSRF-like family p 38.5 13 0.00054 16.0 1.9 110 130-252 14-132 (134)
33 2nwr_A 2-dehydro-3-deoxyphosph 36.6 5.9 0.00025 17.9 -0.0 45 145-195 202-246 (267)
34 2fi0_A Conserved domain protei 32.9 5.2 0.00022 18.2 -0.8 45 169-213 34-81 (81)
35 3dpi_A NAD+ synthetase; ssgcid 31.1 23 0.00097 14.5 2.4 13 145-157 144-156 (285)
36 2vhh_A CG3027-PA; hydrolase; 2 27.7 21 0.0009 14.7 1.6 30 135-168 231-260 (405)
37 1vr6_A Phospho-2-dehydro-3-deo 22.3 18 0.00075 15.2 0.4 17 149-165 294-310 (350)
No 1
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=0 Score=405.05 Aligned_cols=262 Identities=18% Similarity=0.248 Sum_probs=220.6
Q ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCC-CCCCCHHHHHHCCCCEEEE
Q ss_conf 000002223765677765431122111288199985788999997898189999973784-3354345543269969997
Q gi|254780603|r 18 SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV 96 (282)
Q Consensus 18 ~~~~k~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~-~~~~~~~~~l~~~~~I~~v 96 (282)
+...+++..|+.+|++.++.+++++|++++.|+|||.|+|.|||+++.. +..+|++++. ..+....+..........+
T Consensus 10 ~~~~~iss~N~~~k~~~~l~~~r~~R~~~g~fivEG~~~V~eal~~~~~-i~~l~~~~~~~~~~~~~~l~~~~~~~~i~v 88 (287)
T 1x7o_A 10 PAARRITSRNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGWP-VRTLLYDGQRELSKWARELLRTVRTEQIAM 88 (287)
T ss_dssp --------CCHHHHHHHHTTSCHHHHHHHTEEEEESHHHHHHHHHTTCC-EEEEEEESSCCCCHHHHHHHHHSCSEEEEE
T ss_pred CCCCEECCCCHHHHHHHHHHHCCCHHHHHCEEEEECHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 9877600699999999998548150106199999877999999868998-499999376222467898764346764997
Q ss_pred CHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 689987752477777744202411555540112--665068872343206889999999864200110013686320000
Q gi|254780603|r 97 PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174 (282)
Q Consensus 97 ~~~~l~~i~~~~~~hqGi~a~~~~~~~~~l~~~--~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~ 174 (282)
..+.+.++.+...+|||+++.+.. +...++.+ ..++++|+||+||||+|+|+|+|||+|||+++|+++++++|||++
T Consensus 89 ~~~~~~~~~~~~~~~qgv~av~~~-p~~~l~~l~~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~~~~~~ 167 (287)
T 1x7o_A 89 APDLLMELGEKNEAPPEVVAVVEM-PADDLDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDP 167 (287)
T ss_dssp CHHHHTTSSCSSSCCCSEEEEEEC-CCCCGGGSCCCTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSH
T ss_pred CHHHHHHHHCCCCCCCEEEEEEEC-CCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 839999985589998739999976-8677657404589779999668776558999998885598769997303444443
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC
Q ss_conf 0134443333211012223221122222221-----00000001233322112236898899975867898779998589
Q gi|254780603|r 175 VLAKSASGALEHIPYIRISNLTDALQKMHSW-----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 (282)
Q Consensus 175 ~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d 249 (282)
+++|+|+|++|++|++++.++.++++.+++. ++++++++.++..++++++++++++||||||++|||+++++.||
T Consensus 168 ~~~ras~Ga~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d 247 (287)
T 1x7o_A 168 KSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCD 247 (287)
T ss_dssp HHHHHTTTGGGTSCEEEESSHHHHHHHHHHHHHHTCCCEEEEECTTCSEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCS
T ss_pred CCCEECCCHHHHCCEEEEEHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCC
T ss_conf 00000102132110489810467777655554048756874120002432111203686299988888788999998589
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 39992789687437899999999999987614
Q gi|254780603|r 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 250 ~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
+.|+|||.|.+||||||+|+||+|||+.|||.
T Consensus 248 ~~v~IPm~g~~eSLNvsvA~~I~lyE~~RqR~ 279 (287)
T 1x7o_A 248 YTVSIPMAGSASSLNAANAATAILYEAVRQRI 279 (287)
T ss_dssp EEEECCCSSSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf 89998999999712299999999999998785
No 2
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=0 Score=405.57 Aligned_cols=254 Identities=15% Similarity=0.209 Sum_probs=218.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCC-CCCHHHHHHCCCCEEEECHHH
Q ss_conf 0222376567776543112211128819998578899999789818999997378433-543455432699699976899
Q gi|254780603|r 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQT 100 (282)
Q Consensus 22 k~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~-~~~~~~~l~~~~~I~~v~~~~ 100 (282)
..++.||.+|++.++. +++|++.+.|++||.++|.|||+++.. +..+|++++... ..........+++++.++.+.
T Consensus 10 ItS~~Np~ik~l~~L~--kk~R~~~~~~lveG~~~v~eal~~g~~-~~~l~~~~~~~~~~~l~~l~~~~~i~v~~v~~~~ 86 (277)
T 3nk6_A 10 ITNASDPAVQRIIDVT--KHSRASIKTTLIEDTEPLMECIRAGVQ-FIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSI 86 (277)
T ss_dssp TSBCSSCSHHHHHHHH--HTC----CEEEEESHHHHHHHHHTTCC-EEEEEEETTSCCCHHHHHHHHHTTCCEEEECHHH
T ss_pred EECCCCHHHHHHHHHH--HCCHHHCCEEEEEEHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 6289998999999876--505525395999807999999977999-3699997898778899999996799589978999
Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCCHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHH
Q ss_conf 87752477777744202411555540112-665068872343206889999999864200110013-6863200000134
Q gi|254780603|r 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAK 178 (282)
Q Consensus 101 l~~i~~~~~~hqGi~a~~~~~~~~~l~~~-~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~-~~~~~~~~~~~~r 178 (282)
|+++++.+ +|||+++.+.......++++ ..++++|+||+||||||+|+|+|||+|||+++|+++ ++++|+|+++++|
T Consensus 87 l~~ls~~~-~~qgv~a~~~~~~~~~l~~~~~~~~~ilvLD~IqDPgNlGaIiRta~afG~~~vil~~~~~~~~~~~kv~R 165 (277)
T 3nk6_A 87 VNQLFKAE-RKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLR 165 (277)
T ss_dssp HTTCC------CCEEEEEECCCCCCHHHHHHHCSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHH
T ss_pred HHHHHCCC-CCCEEEEEECCCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
T ss_conf 99986589-97559999846885558777404986999947887745899999999708857996257855234731243
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC-CCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCC
Q ss_conf 443333211012223221122222221000000012333221122-3689889997586789877999858939992789
Q gi|254780603|r 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 (282)
Q Consensus 179 as~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~ 257 (282)
+|+|++|++|++.. ++.+++++++++||++++++.+++.+++++ +++++++||||||++||++++++.||..|+|||.
T Consensus 166 aS~Ga~~~~p~~~~-~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~ 244 (277)
T 3nk6_A 166 ASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPML 244 (277)
T ss_dssp HTTTCTTTSCEEEC-CHHHHHHHHHHTTCCEEEECTTCSEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCS
T ss_pred CCCCCEEECCEEEC-CCCHHHHHHHHCCCEEEEEEECCCCCEECCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCC
T ss_conf 25663342120220-32034677763586179998437644000114788889998776678889999738949997298
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 68743789999999999998761
Q gi|254780603|r 258 GIIKALNVSNAAAVALYITQNHF 280 (282)
Q Consensus 258 ~~~~SLNvs~a~ai~l~~~~~~~ 280 (282)
|.+||||||+|+||+|||..||+
T Consensus 245 g~~eSLNvsvA~~I~lyE~~rq~ 267 (277)
T 3nk6_A 245 SSTESLNVSVSVGIALHERSARN 267 (277)
T ss_dssp STTCCCCHHHHHHHHHHHTHHHH
T ss_pred CCCCEEEHHHHHHHHHHHHHHHC
T ss_conf 99972159999999999999713
No 3
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=0 Score=387.76 Aligned_cols=254 Identities=18% Similarity=0.216 Sum_probs=216.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCC-HHH---HHHCCCCEEEECH
Q ss_conf 222376567776543112211128819998578899999789818999997378433543-455---4326996999768
Q gi|254780603|r 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDA---NLPHPFPVKTVPP 98 (282)
Q Consensus 23 ~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~-~~~---~l~~~~~I~~v~~ 98 (282)
.++.||.+|++.++.+ +++|++++.|++||.++|.+||+++.. +..+|++++...... ... ....++++..|++
T Consensus 4 ~S~~np~vK~l~~L~~-kk~R~~~~~fivEG~~~v~eaL~~~~~-i~~i~~~~~~~~~~~~~~~~~l~~~~~~~v~~v~~ 81 (274)
T 1ipa_A 4 TSTANPRIKELARLLE-RKHRDSQRRFLIEGAREIERALQAGIE-LEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSE 81 (274)
T ss_dssp CCTTSHHHHHHHGGGS-HHHHHHHTEEEEESHHHHHHHHHTTCC-EEEEEEETTCCCHHHHHHHHCC-----CEEEEECH
T ss_pred CCCCCHHHHHHHHHCC-CCCCHHHCEEEEEEHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECH
T ss_conf 4899989999987513-666015098999838999999967998-25999982632123678999988638985899699
Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCCH-HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 9987752477777744202411555540-112665068872343206889999999864200110013686320000013
Q gi|254780603|r 99 QTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177 (282)
Q Consensus 99 ~~l~~i~~~~~~hqGi~a~~~~~~~~~l-~~~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ 177 (282)
+.|+++++.+ +|||+++.+........ .....++++|+||+|+||+|+|+|+|||+|||+++|+++ +++|||+++++
T Consensus 82 ~~l~~ls~~~-~~qGvia~~~~~~~~~~~~~~~~~~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~~-~~~~~~~~~~~ 159 (274)
T 1ipa_A 82 AVLKKLSVRD-NPAGLIALARMPERTLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVA-GGVDLYSPQVI 159 (274)
T ss_dssp HHHHHHCCSS-SCCSEEEEEECCCCCCCCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEE-SCCCTTCHHHH
T ss_pred HHHHHHCCCC-CCCEEEEEECCCCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCEE
T ss_conf 9986660578-986059984167666777434689789999689786279999999997498778844-87233464000
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCC
Q ss_conf 44433332110122232211222222210000000123332211223689889997586789877999858939992789
Q gi|254780603|r 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 (282)
Q Consensus 178 ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~ 257 (282)
|+|+|++|++|++...+ .+.++.+++.++++++++.++...+++.+++++++||||+|++|||+++++.||+.|+|||.
T Consensus 160 r~s~ga~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~ 238 (274)
T 1ipa_A 160 RNSTGVVFSLRTLAASE-SEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQ 238 (274)
T ss_dssp HHTTTGGGTSCEEEECH-HHHHHHHHHTTCCEEEECTTCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCC
T ss_pred CCCCCEEEEEEEEEECH-HHHHHHHHHCCEEECCCCCCCCCCCEECCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCC
T ss_conf 03543168998886113-77888765123000012333343110014677739999167678899999748979997699
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 687437899999999999987614
Q gi|254780603|r 258 GIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 258 ~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
|.++|||||+|+||+|||+.||+.
T Consensus 239 g~~~SLNvsvA~~I~lyE~~Rqr~ 262 (274)
T 1ipa_A 239 GQADSLNVSVSAALLLYEALRQRL 262 (274)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999701399999999999998488
No 4
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=0 Score=381.43 Aligned_cols=238 Identities=27% Similarity=0.400 Sum_probs=213.0
Q ss_pred CCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCC-CHHH--HHHCCCCEEEECHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 112881999857889999978981899999737843354-3455--4326996999768998775247777774420241
Q gi|254780603|r 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119 (282)
Q Consensus 43 R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~-~~~~--~l~~~~~I~~v~~~~l~~i~~~~~~hqGi~a~~~ 119 (282)
|.++..++|||.|+|.|+|+++++.+..+|++++...+. .... ...++++++.++++.|++++... +|||+++.+.
T Consensus 7 ~~~~~~e~IyG~~~V~eaL~~~~~~i~~l~v~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~~~~~~-~~qgv~~~~~ 85 (253)
T 1gz0_A 7 RGSHMSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGA-VHQGIIARVK 85 (253)
T ss_dssp -----CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEEEECSHHHHHTTTSC-CCTTEEEEEC
T ss_pred CCCCCCCEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHCCCC-CCCCCHHEEE
T ss_conf 999997189888999999848997627999738987737899999999779849995999997750343-3455100010
Q ss_pred CCCCCCHHHC------CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 1555540112------6650688723432068899999998642001100136863200000134443333211012223
Q gi|254780603|r 120 PLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 (282)
Q Consensus 120 ~~~~~~l~~~------~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~ 193 (282)
+......+.. .+++++|+||+++||+|+|+|+|||+|||+++|++++++++++++++.|+|+|+++++|+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vvLd~i~dp~NlGaiiRta~afG~~~vil~~~~~~~~~~~~~r~s~G~~~~~~~~~~~ 165 (253)
T 1gz0_A 86 PGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVT 165 (253)
T ss_dssp CCCCCCGGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEES
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHCCCHHCCCCCCCC
T ss_conf 11213356699998466898699995578850799999999972998683046766765242234325861128950169
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 22112222222100000001233322112236898899975867898779998589399927896874378999999999
Q gi|254780603|r 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273 (282)
Q Consensus 194 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l 273 (282)
|+.++++.+++.|+++++++..+..++++++++++.+||||||++|||+++++.||..|+|||.|.++|||||+|+||+|
T Consensus 166 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~GnE~~Gls~~~l~~~d~~v~IP~~g~~~SLNva~A~aI~l 245 (253)
T 1gz0_A 166 NLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICL 245 (253)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99999998643012221223234553112104797699987877788999998599899978989995061999999999
Q ss_pred HHHHHHHC
Q ss_conf 99987614
Q gi|254780603|r 274 YITQNHFA 281 (282)
Q Consensus 274 ~~~~~~~~ 281 (282)
||+.|||+
T Consensus 246 ye~~rqr~ 253 (253)
T 1gz0_A 246 FEAVRQRS 253 (253)
T ss_dssp HHHHHHTC
T ss_pred HHHHHCCC
T ss_conf 99997649
No 5
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83}
Probab=100.00 E-value=0 Score=386.74 Aligned_cols=242 Identities=21% Similarity=0.252 Sum_probs=202.0
Q ss_pred CHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHCCCCEEEEC-HHHHHHHH
Q ss_conf 76567776543112211128819998578899999789818999997378433543455432699699976-89987752
Q gi|254780603|r 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP-PQTIDKIV 105 (282)
Q Consensus 27 n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~~~~~l~~~~~I~~v~-~~~l~~i~ 105 (282)
|+.+|+++++.++ |+|++++.|++||.|+|.|||+++. +..++.++...... .......+..+. ...|++++
T Consensus 7 ~~~iK~~~~L~~k-k~R~~~~~flvEG~~~v~eal~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~is 79 (257)
T 2i6d_A 7 ANQIKFLRSLRER-KYRLREQAFAVEGPKLVGEMLPFYR--CRMLVGTAAMLRAV----STPHDAEVVELPESFDFKRIS 79 (257)
T ss_dssp HHHHHHHHHTTSH-HHHHHHTEEEEESHHHHHHHGGGSC--EEEEEEEHHHHHTS----CCCTTCEEEEECTTCCGGGTC
T ss_pred HHHHHHHHHHHCC-CHHHHHCEEEEEEHHHHHHHHHCCC--CCEEEECHHHHHHH----CCCCCCCEEEECCHHHHHHHH
T ss_conf 9999999970163-0337869799982899999982499--87999638998653----330368469956789999974
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 47777774420241155554011266506887234320688999999986420011001368632000001344433332
Q gi|254780603|r 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185 (282)
Q Consensus 106 ~~~~~hqGi~a~~~~~~~~~l~~~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~ 185 (282)
+.. +|||+++.+..... ......+++|+||+||||||+|+|+|||+|||+++|+++++++|||+|+++|+|||++|
T Consensus 80 ~~~-~~qGi~Av~~~p~~---~~~~~~~~~lvLd~i~dPgNlGaIiRta~afG~~~vil~~~~~d~~~~k~~ras~Ga~~ 155 (257)
T 2i6d_A 80 TQT-TPQPLMAVFDLPAE---PEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALA 155 (257)
T ss_dssp CSS-SCCSEEEEEECCCC---CCCCCCSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGG
T ss_pred CCC-CCCCEEEEEECCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCE
T ss_conf 889-99728999963568---76566884999957988457999999999809860200014556577666321157501
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC--CCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEC-----CCC
Q ss_conf 1101222322112222222100000001233322--112236898899975867898779998589399927-----896
Q gi|254780603|r 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPG 258 (282)
Q Consensus 186 ~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip-----~~~ 258 (282)
++|++.+.++.++++.+++.|+++++++.++... ....+++++++||||||++|||+++++.||+.|+|| |.|
T Consensus 156 ~v~~~~~~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~~d~~v~IP~~~~~m~g 235 (257)
T 2i6d_A 156 RVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKG 235 (257)
T ss_dssp TCEEEECSCHHHHHHHHHHTTCCEEEEEEEEEETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC--
T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCC
T ss_conf 10223331256789998536835998302455310000126788659998787678899999848868998998778899
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 874378999999999999876
Q gi|254780603|r 259 IIKALNVSNAAAVALYITQNH 279 (282)
Q Consensus 259 ~~~SLNvs~a~ai~l~~~~~~ 279 (282)
++||||||+|+||+|||+.||
T Consensus 236 ~veSLNva~A~aI~lyE~~Rq 256 (257)
T 2i6d_A 236 HTESLNVAIATAILCSEWRRR 256 (257)
T ss_dssp --CCCCHHHHHHHHHHHHHHT
T ss_pred CCCCEEHHHHHHHHHHHHHHC
T ss_conf 987310999999999999856
No 6
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=267.01 Aligned_cols=148 Identities=22% Similarity=0.368 Sum_probs=135.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHH
Q ss_conf 5068872343206889999999864200110013686320000013444333321101222--32211222222210000
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQT 209 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~--~~~~~~l~~~~~~~~~i 209 (282)
.+++||||+|+||+|+|+|+|||+|||++.+++.+.+ +++++.+.|+|+|+++++++..+ .++.+++.+++..||++
T Consensus 25 ~~l~vvld~i~dP~NlG~IiRta~afGv~~viv~~~~-~~~~~~~~~~s~g~~~~i~~~~~~~~~~~~~l~~~k~~g~~v 103 (184)
T 2ha8_A 25 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQ-CISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTI 103 (184)
T ss_dssp CCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCGG-GGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHHTTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCC-CCCCHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 9879998178880379999999998199779507644-568747776405531020211345146899999987559689
Q ss_pred HHCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 00012333-221122368988999758678987799985893999278968743789999999999998761
Q gi|254780603|r 210 IGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 (282)
Q Consensus 210 ~~~~~~~~-~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~ 280 (282)
++++..++ .++.+++++++++||||+|++|||+++++.||..++|||.+.++|||||+|+||+|||+.||+
T Consensus 104 v~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IP~~~~~~SLNvs~A~aI~lye~~rq~ 175 (184)
T 2ha8_A 104 IGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 175 (184)
T ss_dssp EEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 873132455333211146885688676557889999985897999729699970259999999999999834
No 7
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00 E-value=3.1e-43 Score=265.89 Aligned_cols=150 Identities=23% Similarity=0.341 Sum_probs=138.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 66506887234320688999999986420011001368632000001344433332110122232211222222210000
Q gi|254780603|r 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 (282)
Q Consensus 130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i 209 (282)
+.++++|+||+|+||+|+|+|+|||+|||++.+++...++++++ ..++++|+.+++++..+.+..++++.+++.|+++
T Consensus 19 ~~~~~~vvld~v~~p~NlGaIiRta~afG~~~i~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~~i 96 (194)
T 1v2x_A 19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT--FNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTV 96 (194)
T ss_dssp CBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCC--CCSSCSSGGGTSEEEEESSHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCH--HHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCEE
T ss_conf 89998999967988465999999999749964303588667713--4431034431246999558999999999759825
Q ss_pred HHCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 000123-332211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r 210 IGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 210 ~~~~~~-~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
++++.. +..++.+++++.+.+||||+|++|||+++++.||.+|+|||.+.++|||||+|+||+|||..||+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~lVfG~E~~Gls~e~l~~~d~~v~IPm~~~~~SLNvs~A~aI~lyE~~Rq~~ 169 (194)
T 1v2x_A 97 YATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL 169 (194)
T ss_dssp EEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf 4201222245401102688828997676788999999858979995899998632699999999999999776
No 8
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=1.5e-42 Score=261.93 Aligned_cols=151 Identities=22% Similarity=0.299 Sum_probs=136.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 66506887234320688999999986420011001368632000001344433332110122232211222222210000
Q gi|254780603|r 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 (282)
Q Consensus 130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i 209 (282)
+.++++++||+|+||+|+|+|+|||+|||+++|++...... ..+...++++|+.+++++..+.++.+++..+++.|+++
T Consensus 22 ~~~~l~vvLd~i~~p~NiGaI~Rta~afG~~~v~l~~~~~~-~~~~~~~~s~gs~~~~~~~~~~~~~~~l~~~~~~~~~i 100 (211)
T 1zjr_A 22 RQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGK-KAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQI 100 (211)
T ss_dssp CEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTT-CCCCCHHHHTTGGGSSEEEECSCHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC-CCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCEE
T ss_conf 89998999958988437999999999858988999489888-62778888524410357999678899987654048448
Q ss_pred HHCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0001233-32211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r 210 IGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 210 ~~~~~~~-~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
++++.++ +.++.+++++++.+||||+|++|||+++++.||..|+|||.|.++|||||+|+||+|||+.||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~lvfG~E~~GLs~e~l~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~Rqr~ 173 (211)
T 1zjr_A 101 VATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQRE 173 (211)
T ss_dssp EEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf 8740333332221245663069997676678999999857989997799999700499999999999998687
No 9
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305}
Probab=100.00 E-value=6.9e-39 Score=240.97 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=137.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 68872343206889999999864200110013686320000013444333321101222322112222222100000001
Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 (282)
Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~ 213 (282)
+-|+|++++||+|+|+|+|||++||++.|++.+.+.++.++++.++++|+++.+++....+....+..++..++++++++
T Consensus 6 ~~ivL~~p~~P~NiGaI~Rta~afGi~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
T 3e5y_A 6 FNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFT 85 (160)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCCGGGEEEEC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHCCCCEEEEEE
T ss_conf 79999489999839999999998499578526998640268999874162587645663218889988750583699973
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC--CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23332211223689889997586789877999858--939992789687437899999999999987614
Q gi|254780603|r 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 214 ~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~--d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
..+...+++..++.+.+||||+|++|||+++++.| |++|+|||.+.++|||||+|+||+|||+.||.+
T Consensus 86 ~~~~~~~~~~~~~~k~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~~~~~SLNvsvAaaI~lyE~~Rq~~ 155 (160)
T 3e5y_A 86 TRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAG 155 (160)
T ss_dssp STTCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSSSCCCCHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEHHHHHHHHHHHHHHCCC
T ss_conf 0123322112456523999804778899899986303232334799998716699999999999997618
No 10
>3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=100.00 E-value=6.7e-39 Score=241.02 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=122.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-------------------CCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 50688723432068899999998642001100136863-------------------20000013444333321101222
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-------------------PSESAVLAKSASGALEHIPYIRI 192 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~-------------------~~~~~~~~ras~Ga~~~l~~~~~ 192 (282)
..+.||||+++||+|+|+|+|||++||++.|++...++ ++++++++|+|+|+.+.++...+
T Consensus 16 ~~i~vVL~~~~~P~NlGaI~Rt~~~fG~~~l~lv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ga~~~l~~~~~ 95 (223)
T 3ic6_A 16 GNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEI 95 (223)
T ss_dssp GGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCCEEE
T ss_conf 48699991798877499999999974998799974676664210122223554323567658899986364876282378
Q ss_pred -CCCCCCCCCCCCCCCHH----------HHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCC
Q ss_conf -32211222222210000----------0001233322112236898899975867898779998589399927896874
Q gi|254780603|r 193 -SNLTDALQKMHSWGFQT----------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261 (282)
Q Consensus 193 -~~~~~~l~~~~~~~~~i----------~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~ 261 (282)
.++.++++.+....... +.........+.+..++.+.+||||+|++||++++++.||.+++|||.+.++
T Consensus 96 ~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfGnE~~GLs~~~~~~~d~~v~IPm~~~~~ 175 (223)
T 3ic6_A 96 VATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYF 175 (223)
T ss_dssp ESCHHHHHTTEEEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECCCCCTTCC
T ss_pred ECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCEECCCCCCCC
T ss_conf 61499987531211111111135544201321000145555304777179976666687978988630011115899997
Q ss_pred HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 378999999999999876149
Q gi|254780603|r 262 ALNVSNAAAVALYITQNHFAK 282 (282)
Q Consensus 262 SLNvs~a~ai~l~~~~~~~~~ 282 (282)
|||||+|+||+|||++||+.+
T Consensus 176 SLNvS~A~aIvlyE~~rq~~~ 196 (223)
T 3ic6_A 176 SLNLAQAVQVVCYEIFSQTDS 196 (223)
T ss_dssp CCCHHHHHHHHHHHHHHTTTS
T ss_pred CEEHHHHHHHHHHHHHHHHCC
T ss_conf 327999999999999984268
No 11
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=100.00 E-value=2.1e-38 Score=238.14 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=134.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCH
Q ss_conf 50688723432068899999998642001100136863200000134443333211012223221122---222221000
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL---QKMHSWGFQ 208 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l---~~~~~~~~~ 208 (282)
.-+-|+|++++||+|+|+|+|||++||++++++.+.+.++.++.+.++++|..+.+++....+...+. +.....+++
T Consensus 3 ~~l~ivL~~p~~P~NlGaI~Rta~afGv~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 3n4j_A 3 AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPAR 82 (165)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTT
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 63699996899998199999999976997894168654025189998837336532112100388888999873356427
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00001233322112236898899975867898779998589--39992789687437899999999999987614
Q gi|254780603|r 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
+++++..+...+++++++.+.+||||+|++|||+++++.|| ++|+|||.+.++|||||+|+||+|||+.||++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~d~~~~v~IP~~g~~~SLNvsvA~aI~lye~~RQ~~ 157 (165)
T 3n4j_A 83 LFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 157 (165)
T ss_dssp EEEECTTCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHCC
T ss_conf 886313221036663257661699735667899999985887639980499999865899999999999998049
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.30A {Bordetella pertussis}
Probab=100.00 E-value=1.1e-38 Score=239.78 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=117.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----
Q ss_conf 5068872343206889999999864200110013686320--000013444333321101222322112222222-----
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIRISNLTDALQKMHS----- 204 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~--~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~----- 204 (282)
..+.+|||++|||+|+|+|+|||+|||+++|++.+.++++ +++++.++++|+.+.++.....+..+.+.....
T Consensus 9 ~~i~vVL~~~~~P~NlGaIiRsa~afG~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVTLAFAL 88 (173)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCSEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEEEEEEECCHHHHHHHHCCCCCCH
T ss_conf 86599992798987499999999982998899989977777887889873387604544421033299998520222100
Q ss_pred ------CCCHHHHCC--CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ------100000001--233322112236898899975867898779998589399927896874378999999999999
Q gi|254780603|r 205 ------WGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 (282)
Q Consensus 205 ------~~~~i~~~~--~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~ 276 (282)
.+.+..... ......+.+..++.+.+||||+|++||++++++.||..|+|||.+.++|||||+|+||+|||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~~~~~SLNvs~AaaI~lyEl 168 (173)
T 3kty_A 89 TTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWEL 168 (173)
T ss_dssp ECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCSTTCCCCHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEEHHHHHHHHHHHH
T ss_conf 00012233432322343322233333214676289977756788989997479799941898998267899999999999
Q ss_pred HHHH
Q ss_conf 8761
Q gi|254780603|r 277 QNHF 280 (282)
Q Consensus 277 ~~~~ 280 (282)
+|++
T Consensus 169 rra~ 172 (173)
T 3kty_A 169 RYAL 172 (173)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9975
No 13
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.3e-36 Score=227.99 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=124.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 68872343206889999999864200110013686320000013444333321101222322112222222100000001
Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 (282)
Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~ 213 (282)
.+|||+++++|+|+|+|+|+|++||++.+++.+.+++++++++.++|+|+.+.++.....+..+.+...+...+.+.+..
T Consensus 5 p~iVLv~p~~p~NiGai~R~~~~fG~~~l~lv~p~~~~~~~~~~~~a~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (249)
T 3onp_A 5 PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDCDYVFATTARG 84 (249)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTCSEEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCHHEECEEEEECCHHHHHHHHCCHHHHHHHH
T ss_conf 88999389998749999999998289989991898899988999884787322021136445999976300013222231
Q ss_pred CCCC-----------CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2333-----------2211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 214 ~~~~-----------~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
.... ......+++.+++||||+|+.||+++.++.||..++|||.+.++|||||+|++|+|||..||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~kvalVFG~E~~GLs~e~l~~cd~~v~IP~~~~~~SLNls~AvaIvlyEl~r~~~ 163 (249)
T 3onp_A 85 RELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHD 163 (249)
T ss_dssp CCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTTCCCCCHHHHHHHHHHHHHHC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHC
T ss_conf 3578641001134677787650477659999478778887887402518983489998861599999999999999841
No 14
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae}
Probab=100.00 E-value=1.7e-34 Score=215.75 Aligned_cols=143 Identities=18% Similarity=0.194 Sum_probs=113.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHH
Q ss_conf 5068872343206889999999864200110013686320000013444333321101222-322112222222100000
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHSWGFQTI 210 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~-~~~~~~l~~~~~~~~~i~ 210 (282)
..+.|||+++|+|+|+|+|+|||++||++++++...+ +++++++++|+|+.+.++...+ .++.+++..+... +
T Consensus 6 ~~i~iVL~~p~~p~NiGai~Rs~~~fG~~~L~lV~p~--~~~~~a~~~a~ga~~~l~~~~~~~~~~~~~~~~~~~----~ 79 (244)
T 3ilk_A 6 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLV----I 79 (244)
T ss_dssp TTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCSEE----E
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC--CCCHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHH----H
T ss_conf 3989999489886769999999998099979993899--989799997475411237579984066666667788----8
Q ss_pred HCCCC-----------CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 00123-----------3322112236898899975867898779998589399927896874378999999999999876
Q gi|254780603|r 211 GLSSD-----------SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 (282)
Q Consensus 211 ~~~~~-----------~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~ 279 (282)
+++.. .+.......++++++||||+|+.||+.+.++.||..|+|||.+.++|||||+|++|+|||++++
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ialvfG~E~~GLs~~~l~~~d~~v~IP~~~~~~SLNls~AvaIvlYEl~~~ 159 (244)
T 3ilk_A 80 GTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMA 159 (244)
T ss_dssp EECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHH
T ss_conf 99876422564436878742232036886488616666899768761556069855899983232899999999999998
Q ss_pred H
Q ss_conf 1
Q gi|254780603|r 280 F 280 (282)
Q Consensus 280 ~ 280 (282)
.
T Consensus 160 ~ 160 (244)
T 3ilk_A 160 F 160 (244)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 15
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=99.66 E-value=5.8e-17 Score=115.33 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCC----------C-HHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC-CC--
Q ss_conf 06889999999864200110013686320----------0-0001344433332110122-23221122222221-00--
Q gi|254780603|r 143 DPHNIGAILRSAVAFSCDGIITTKRYSPS----------E-SAVLAKSASGALEHIPYIR-ISNLTDALQKMHSW-GF-- 207 (282)
Q Consensus 143 dp~NlG~I~Rta~a~g~~~vil~~~~~~~----------~-~~~~~ras~Ga~~~l~~~~-~~~~~~~l~~~~~~-~~-- 207 (282)
-+.|+|.|.|+|..||++.+++.....++ | +.+..+.+.|+.+-+.-.+ ++++.++++.+... |.
T Consensus 27 tnldihdIARamkn~Gl~~l~lV~P~~~q~~l~~~~~~~W~~~~a~~~a~~a~dvL~~akV~~sLeeAl~d~~~~~g~s~ 106 (192)
T 3dcm_X 27 TNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERP 106 (192)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHHHHHHHSSCC
T ss_pred CCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHCEEECCHHHHHHHHHHHCCCCC
T ss_conf 46547999999986799727996762677888988875077704555088989998218786889999987887528862
Q ss_pred HHHHCCCCCCC---CCCC-----CCCCCCEEEEECCCCCCCCHHHHHHCCCEEE-ECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 00000123332---2112-----2368988999758678987799985893999-278968743789999999999998
Q gi|254780603|r 208 QTIGLSSDSKK---PLEQ-----EIKNDKIALILGAEGKGLRPKTQETATSMAH-LHMPGIIKALNVSNAAAVALYITQ 277 (282)
Q Consensus 208 ~i~~~~~~~~~---~~~~-----~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~-Ip~~~~~~SLNvs~a~ai~l~~~~ 277 (282)
.+++++..... ++.+ ....++++|+|| |+.||+.+.++.||..+. ||+++...|||||+|++|+|+++.
T Consensus 107 ~vvaTsar~r~~~~~~~e~~~~l~~~~~~valvFG-E~~GLtneeL~~cd~iL~~Ip~~~~y~sLNvs~AvaIildrl~ 184 (192)
T 3dcm_X 107 LIFFTSAKKRENDISFEEGRRIIIETEKPVLILLG-TGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLI 184 (192)
T ss_dssp EEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEEC-CTTCCCHHHHTTCSEEBCCTTTTSSCCCCCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 68604566578998999999998733881899934-7779999999853977863579999983079999999999985
No 16
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=96.88 E-value=0.0032 Score=36.65 Aligned_cols=123 Identities=20% Similarity=0.151 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 2068899999998642001100136863200---0001344433332110122232211222222210000000123332
Q gi|254780603|r 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSE---SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 (282)
Q Consensus 142 ~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~---~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 218 (282)
+|+.=.--+.=||-|||+++++++... |+- +-.-+-..=|.-|.+.+ ..++..+ +++.+-.++.+++-|.
T Consensus 13 RDkRiTTHV~LtARAfGA~~i~l~~~~-D~~v~etv~~V~~rwGG~F~ve~--~~~~~~~---ik~~~G~vVHLTMYG~- 85 (201)
T 2yy8_A 13 RDKRVTTHVALTARAFGADGIIIASEE-DEKVKESVEDVVKRWGGPFFIEF--NRNWRKV---MKEFTGVKVHLTMYGL- 85 (201)
T ss_dssp -CTHHHHHHHHHHHHTTCSEEEESSSC-CHHHHHHHHHHHHHHCSCCBCCB--CSCHHHH---HHHCCSEEEEEEEEEE-
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHHHCCCCEEEEE--CCCHHHH---HHHCCCEEEEEECCCC-
T ss_conf 675225688899987168758974788-73699999999985299669997--4688999---9865997999844787-
Q ss_pred CCC----C----CCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 211----2----2368988999758678987799985893999278968743789999999999998
Q gi|254780603|r 219 PLE----Q----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 (282)
Q Consensus 219 ~~~----~----~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~ 277 (282)
++. + ..-.++..+|+|.|- +|.++-+.||+.|.|--...-| -.|.||+|-.+.
T Consensus 86 ~i~dvi~~Ir~~~~~~~~iLVVVGaeK--VP~evYelADyNVaVgNQPHSE----VAALAIFLDrl~ 146 (201)
T 2yy8_A 86 HVDDVIEELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----VAALAVLLDRLL 146 (201)
T ss_dssp EHHHHHHHHHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCH----HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCHHH----HHHHHHHHHHHH
T ss_conf 602677988752556885899978885--9989983367525547887289----999999999870
No 17
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=96.77 E-value=0.0021 Score=37.67 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 20688999999986420011001368632000001344---433332110122232211222222210000000123332
Q gi|254780603|r 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS---ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 (282)
Q Consensus 142 ~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ra---s~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 218 (282)
+|+.=.--+.=||-|||++++++... |+--...++. .=|.-|.+. . .++.+.+++.+-.++-+++-|..
T Consensus 16 RD~RiTTHv~LtARAfGA~~i~l~~~--D~~v~etv~~V~~rwGG~F~v~-----~-~~w~~~ik~~~G~vVHLTMYG~~ 87 (178)
T 2o3a_A 16 RDKRISTHVALTARAFGAKGIYFDTE--DKSVFESVRDVVERWGGDFFIK-----A-VSWKKLLREFDGLKVHLTMYGIP 87 (178)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEESSC--CHHHHHHHHHHHHHHCSCCEEE-----E-CCHHHHHHHCCSEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCC--CHHHHHHHHHHHHHCCCCEEEE-----E-CCHHHHHHHCCCEEEEECCCCCC
T ss_conf 67522468889998716976897177--7368898999997229932899-----6-48999987559989996578986
Q ss_pred ---CCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ---2112236898899975867898779998589399927896874378999999999999
Q gi|254780603|r 219 ---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 (282)
Q Consensus 219 ---~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~ 276 (282)
-+.++.-.++..+|+|.|- +|.++-+.||+.|.|--...-| | .|.||+|-.+
T Consensus 88 i~~~i~~Ir~~~~ilvVVGaeK--VP~evYe~ADyNVaVgNQPHSE---V-AALAiFLDrl 142 (178)
T 2o3a_A 88 LPQKLEEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSE---V-AALAVFLDRV 142 (178)
T ss_dssp HHHHHHHHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCH---H-HHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCHHH---H-HHHHHHHHHH
T ss_conf 4677766304696699988884--9989973267425637988289---9-9999999986
No 18
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=96.02 E-value=0.0037 Score=36.29 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=82.1
Q ss_pred CCCEEEEECCCC-------CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 650688723432-------0688999999986420011001368632000001344433332110122232211222222
Q gi|254780603|r 131 NSQLLMVLDHVN-------DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 (282)
Q Consensus 131 ~~~~~i~ld~i~-------dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~ 203 (282)
+++..|-+++-. |-.+++..++.|..-... +.......++.|- ++...++.+.++.+.
T Consensus 67 ~p~r~I~f~G~~l~~l~p~dErsia~~I~kaL~~~~~----------~~~~~~~e~~pGi-----~v~~~~fe~~l~e~~ 131 (208)
T 2qwv_A 67 DYSRTITVEANEISDVGGFHEAALIALLVKALDASVG----------MGKEQTRVVQPGL-----TVRTISFEALLGELA 131 (208)
T ss_dssp SSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTT----------CCTTCEEEEETTE-----EEECCCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC----------CCCCCEEEECCCE-----EEECCCHHHHHHHHH
T ss_conf 9975899955534788965089999999998746468----------8876327857998-----994889999999986
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC----CEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2100000001233322112236898899975867898779998589----399927896874378999999999999876
Q gi|254780603|r 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 (282)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d----~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~ 279 (282)
.++++|-++.+|. ++.+..++.+.+||+| -..|++++-.+... ..|++ +-.+|=.+++.+|+-|++.||
T Consensus 132 -e~~~i~~Lde~G~-~i~~~~~~~~~~FILg-Dh~~l~~~e~~~L~~~~~~~iSl----Gp~~L~a~hcI~ivh~~LDr~ 204 (208)
T 2qwv_A 132 -EHHSLYMMDKKGD-SIRDIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQCVTLIHNEIDHQ 204 (208)
T ss_dssp -TTSEEEEEEEEEE-ETTTSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEECCCCC-CHHHCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCCEEEE----CCHHHHHHHHHHHHHHHHHCC
T ss_conf -4797899878998-3422568999879970-89998978999998718823754----708888778999999987202
Q ss_pred HC
Q ss_conf 14
Q gi|254780603|r 280 FA 281 (282)
Q Consensus 280 ~~ 281 (282)
-+
T Consensus 205 ~~ 206 (208)
T 2qwv_A 205 EA 206 (208)
T ss_dssp HH
T ss_pred CC
T ss_conf 03
No 19
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=94.37 E-value=0.15 Score=27.04 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=66.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCC--CHHH---HHHHHHHHHH-----HHC-CCCCCCCCCCCCC
Q ss_conf 8872343206889999999864200110--013686320--0000---1344433332-----110-1222322112222
Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPS--ESAV---LAKSASGALE-----HIP-YIRISNLTDALQK 201 (282)
Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~--~~~~---~~ras~Ga~~-----~l~-~~~~~~~~~~l~~ 201 (282)
+.++-.+-.|.++-.|++-|.-+|++.+ +.++++... +..+ .-+....|.. ++| +....++.++++.
T Consensus 73 i~l~~~l~k~~~~e~il~k~tELGV~~I~p~~sers~~~~~~~~k~~R~~~ii~~A~~Qsgr~~lP~I~~~~~~~~~~~~ 152 (228)
T 1v6z_A 73 VVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQV 152 (228)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCCC
T ss_pred EEEEEECCCCHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 58997302807899999998843117999970034421222011021378999999996499446621476477888765
Q ss_pred CCCCCCHHHHCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 2221000000012333-22112236898899975867898779998589--399927896874378999999999
Q gi|254780603|r 202 MHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVAL 273 (282)
Q Consensus 202 ~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~a~ai~l 273 (282)
. ...++ ..... ..........++.+++|.|| |.+++-++... ....+-+..++ |=+-+|+-.++
T Consensus 153 ~---~~~~~--~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~Ei~~~~~~~~~~v~LG~~I--LR~ETA~i~al 219 (228)
T 1v6z_A 153 A---QGLVA--HVGATARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRRI--LRAETAALALL 219 (228)
T ss_dssp S---SEEEE--CTTCCCCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHHHHTEEEECCCSSC--CCHHHHHHHHH
T ss_pred H---HHHHH--HCCCCCCCCCCCCCCCEEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CHHHHHHHHHH
T ss_conf 4---44332--00222232312356760699967987-889999999997898897679982--45785999999
No 20
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=93.99 E-value=0.025 Score=31.52 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=79.7
Q ss_pred CCCEEEEECCC------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 65068872343------206889999999864200110013686320000013444333321101222322112222222
Q gi|254780603|r 131 NSQLLMVLDHV------NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 (282)
Q Consensus 131 ~~~~~i~ld~i------~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~ 204 (282)
.++..|.+++- -|=.+++..++.|..- +.. ..-.+++.|- +....++.+.++.+.
T Consensus 62 ~p~r~i~f~G~~lk~l~pdErSia~~I~kaL~~-------~~~------~~~~e~~pGi-----~v~~~~~e~~l~e~~- 122 (197)
T 2qmm_A 62 SPPKSILIKGDEVRRMSPDERNVAGHIKKALAV-------ECG------KSWKKVHSGV-----YVSRKGLEELIEELS- 122 (197)
T ss_dssp SCCEEEEEETTTCCSCCSSHHHHHHHHHHHHHS-------CCC------SSCEEEETTE-----EEECCCHHHHHHHHH-
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC-------CCC------CCCEEECCCE-----EEECCCHHHHHHHHH-
T ss_conf 997368984622456781278999999998555-------878------7604534898-----991889999999987-
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH----CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1000000012333221122368988999758678987799985----89399927896874378999999999999876
Q gi|254780603|r 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 (282)
Q Consensus 205 ~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~----~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~ 279 (282)
.++.+|-++.+|. ++.+..++.+.++|+|-- .|++++-.+. ....+++ +-.+|=.+++.+|+-|++.|-
T Consensus 123 ~~~~~~~L~e~G~-~i~~~~~~~~~~FiL~Dh-~~l~~~e~~~L~~~~~~~iSL----Gp~~L~a~hcI~ivh~~LDr~ 195 (197)
T 2qmm_A 123 EKYSIIYLKEDGV-DISNAQLPPNPLFVIGDH-EGLTEEQEKVVERYAALKLSL----SPLSLLAEQCVVIAHHHLDRL 195 (197)
T ss_dssp HHSEEEEEEEEEE-EGGGSCCCSSEEEEEECT-TCCCHHHHHHHHTTCSEEEEC----CSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCC-CCCCCCCCCCCEEEEECC-CCCCHHHHHHHHHCCCEEEEC----CCCCCCHHHHHHHHHHHHHHC
T ss_conf 3895899878797-612345799987997289-998877999886517703651----641016346696999988651
No 21
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=93.19 E-value=0.13 Score=27.34 Aligned_cols=137 Identities=13% Similarity=0.197 Sum_probs=69.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHHH------------HHHHHHHH-HHHHCCC-CCCCCCCC
Q ss_conf 8872343206889999999864200110--0136863200000------------13444333-3211012-22322112
Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAV------------LAKSASGA-LEHIPYI-RISNLTDA 198 (282)
Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~~~~------------~~ras~Ga-~~~l~~~-~~~~~~~~ 198 (282)
+.++-.+-.|.++-.|++-|.-+|++.+ +.++++...++.. ++.|+.-+ -.++|-. ...++.++
T Consensus 82 i~l~~~l~K~~~~~~il~k~tELGV~~I~p~~s~rs~~~~~~~~~~~k~~r~~~I~~eA~eQsgr~~lP~I~~~~~l~~~ 161 (257)
T 1vhy_A 82 IHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDW 161 (257)
T ss_dssp EEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHH
T ss_pred EEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 89998402338899999999974876899997102335465667887699999999999986599767865410038999
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCC--CCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHH----HHH
Q ss_conf 2222221000000012333221122--36898899975867898779998589--399927896874378999----999
Q gi|254780603|r 199 LQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSN----AAA 270 (282)
Q Consensus 199 l~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~----a~a 270 (282)
+...... ..+.....+...+.+. ...+++.+++|.|| |.+++-++... ....+.+..++ |=+.+ |.|
T Consensus 162 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~vsLG~~I--LR~ETA~i~als 236 (257)
T 1vhy_A 162 CAENDGA--LKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILLGKRV--LRTETASLAAIS 236 (257)
T ss_dssp HTCCSSC--EEEEECTTCCCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSC--CCHHHHHHHHHH
T ss_pred HHHCCCC--CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CHHHHHHHHHHH
T ss_conf 8615444--21011024444566665303686589985777-889899999998798783268981--668879999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780603|r 271 VALYIT 276 (282)
Q Consensus 271 i~l~~~ 276 (282)
+++|..
T Consensus 237 ~~~~~~ 242 (257)
T 1vhy_A 237 ALQICF 242 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999984
No 22
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=91.98 E-value=0.094 Score=28.20 Aligned_cols=141 Identities=13% Similarity=0.221 Sum_probs=75.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCC------------HHHHHHHHHHH-HHHHC-CCCCCCCCC
Q ss_conf 68872343206889999999864200110--0136863200------------00013444333-32110-122232211
Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSE------------SAVLAKSASGA-LEHIP-YIRISNLTD 197 (282)
Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~------------~~~~~ras~Ga-~~~l~-~~~~~~~~~ 197 (282)
.+.++-.+-.|.++--|++.|.-.|++.+ +.++++...+ ...++.|+.=+ -.++| +....++.+
T Consensus 82 ~i~L~~~l~k~~~~e~ii~katELGV~~I~p~~sers~~~~~~~~~~~k~eR~~~ii~eA~eQsgr~~lP~I~~~~~l~~ 161 (268)
T 1vhk_A 82 KVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQ 161 (268)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHH
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHH
T ss_conf 25799842167528889988783272567810103012212220556409999999999999719998767974369999
Q ss_pred CCCCCCCCCCHHHHCCCCCCC--------CCCCCCCCCCEEEEECCCCCCCCHHHHHH---CCCEEEECCCCC---CCHH
Q ss_conf 222222210000000123332--------21122368988999758678987799985---893999278968---7437
Q gi|254780603|r 198 ALQKMHSWGFQTIGLSSDSKK--------PLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMAHLHMPGI---IKAL 263 (282)
Q Consensus 198 ~l~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~---~d~~v~Ip~~~~---~~SL 263 (282)
+++........++..+..... ...+..-.+++++++|.|| |.++.-++. +. ...+.+..+ +|.
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~IGPEG-Gfs~~Ei~~l~~~g-~~~v~LG~~ILR~ET- 238 (268)
T 1vhk_A 162 LLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQD-GVTCGLGPRILRTET- 238 (268)
T ss_dssp HHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTT-CEEECCCSSCCCTTT-
T ss_pred HHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCCHHHHHHHHHCC-CEEEECCCCCCHHHH-
T ss_conf 997286679489974200234424678888764347981999983898-89999999999789-999778998145774-
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999999998
Q gi|254780603|r 264 NVSNAAAVALYITQ 277 (282)
Q Consensus 264 Nvs~a~ai~l~~~~ 277 (282)
=+-+|.++++|+.-
T Consensus 239 A~i~als~i~~~~~ 252 (268)
T 1vhk_A 239 APLYALSAISYQTE 252 (268)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999988
No 23
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=90.43 E-value=0.77 Score=22.99 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=66.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHH----------HHHHHHHHH-HHHHC-CCCCCCCCC
Q ss_conf 5068872343206889999999864200110--013686320000----------013444333-32110-122232211
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESA----------VLAKSASGA-LEHIP-YIRISNLTD 197 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~~~----------~~~ras~Ga-~~~l~-~~~~~~~~~ 197 (282)
..+.+++--+..+..+=.|++-|.-+|++.+ +.++++...+.. -++.|+.=+ -.++| +....++.+
T Consensus 71 ~~i~l~~~~~k~~~~~e~ilek~tELGV~~i~p~~sers~~~~~~~~~k~eR~~~ii~eA~~Qs~r~~~p~i~~~~~l~~ 150 (229)
T 2egv_A 71 KDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSD 150 (229)
T ss_dssp SEEEEEEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEGGG
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 74289983211045799999998881822999874330210137787789999999999861215677875324567999
Q ss_pred CCCCCCCCCCHHHHCC-CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC--CCEEEECCCCCCCHHHHHHHH
Q ss_conf 2222222100000001-23332211223689889997586789877999858--939992789687437899999
Q gi|254780603|r 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAA 269 (282)
Q Consensus 198 ~l~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~--d~~v~Ip~~~~~~SLNvs~a~ 269 (282)
++..... .++... ..+..........++.++++|.|| |.+++-++.. .....+.+..++ |=+-+|+
T Consensus 151 ~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~IGPEG-Gfs~~E~~~l~~~g~~~v~LG~~I--LR~ETA~ 219 (229)
T 2egv_A 151 LIPESEE---NIILDNFYEGVKPKDVNLEAKTYSVVVGPEG-GFSKRESQILREKGFKSVLLEPYT--LRTETAV 219 (229)
T ss_dssp CCCCSSE---EEEECTTSCCBCGGGSCTTCSEEEEEECCTT-CCCHHHHHHHHHTTCEEECCSSSC--CCHHHHH
T ss_pred HHHHCCC---CHHHHHHHHCCCCHHHHHCCCCCEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CCHHHHH
T ss_conf 9853431---1111223310352123320254158980788-999999999998799897669982--5177599
No 24
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=83.17 E-value=2 Score=20.56 Aligned_cols=128 Identities=11% Similarity=0.219 Sum_probs=63.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC--CCCC------CCCCHHHHHHHHHHH-HHHHCCC-CCCCCCCCCCC
Q ss_conf 506887234320688999999986420011001--3686------320000013444333-3211012-22322112222
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT--TKRY------SPSESAVLAKSASGA-LEHIPYI-RISNLTDALQK 201 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil--~~~~------~~~~~~~~~ras~Ga-~~~l~~~-~~~~~~~~l~~ 201 (282)
..+.+++--+..+.-+-.|++.|.-+|++.++. ++++ .+-|...++.|+.=+ -.++|-. ...++.+++..
T Consensus 77 ~~i~l~~a~~k~~~r~d~ilqk~tELGV~~I~p~~s~~s~~~~~~~~R~~~i~~ea~eQs~r~~~P~I~~~~~l~~~l~~ 156 (257)
T 3kw2_A 77 DRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIAD 156 (257)
T ss_dssp SCEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHH
T ss_conf 64899972444410799998787761844899511232033203788999999999997275538677155489999974
Q ss_pred CCCCCCHHHHCCCCC-C-------C-CCCCCCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCC
Q ss_conf 222100000001233-3-------2-2112236898899975867898779998589--39992789687
Q gi|254780603|r 202 MHSWGFQTIGLSSDS-K-------K-PLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGII 260 (282)
Q Consensus 202 ~~~~~~~i~~~~~~~-~-------~-~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~ 260 (282)
+......++...... . . ........+++++++|.|| |.++.-++... ....+-+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~l~~~g~~~vsLG~~I 225 (257)
T 3kw2_A 157 TPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALLAGFAPVSLGESR 225 (257)
T ss_dssp SCTTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHHHTCEEECCCSSC
T ss_pred CCCCCCCEECHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 701242120001320002233200121134236881799988998-999999999998799898679982
No 25
>1z85_A Hypothetical protein TM1380; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.12A {Thermotoga maritima MSB8}
Probab=79.75 E-value=2.7 Score=19.85 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=70.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCHH----HHHHHHHHHH--HHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88723432068899999998642001100--13686320000----0134443333--2110122232211222222210
Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESA----VLAKSASGAL--EHIPYIRISNLTDALQKMHSWG 206 (282)
Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~vi--l~~~~~~~~~~----~~~ras~Ga~--~~l~~~~~~~~~~~l~~~~~~~ 206 (282)
+-++-.+-.+..+-.+++-|.-.|++.++ .++.+...++. +.+++|+==. .++|-. ++++.....+
T Consensus 87 i~l~~~l~K~~~~e~il~k~tELGV~~i~p~~~~rs~~~~k~~r~~~i~~~A~eQsgr~~lP~I------~~~~~~~~~~ 160 (234)
T 1z85_A 87 LSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKV------SFLEKLEFSG 160 (234)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCCCCHHHHHHHHHHHHHHHTCSBCCEE------EECCSCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE------CHHHHCHHCC
T ss_conf 8999712532037999987652699999971234422000388999999986753188658876------6454140028
Q ss_pred CHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCC-EEEECCCCC-CCHHH-HHHHHHHHHHHHH
Q ss_conf 00000012333221122368988999758678987799985893-999278968-74378-9999999999998
Q gi|254780603|r 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGI-IKALN-VSNAAAVALYITQ 277 (282)
Q Consensus 207 ~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~-~v~Ip~~~~-~~SLN-vs~a~ai~l~~~~ 277 (282)
.++.++..+...+.+....++.++++|.|| |.+++-.+.... ...+.+... -++=. +-+|+++++|..+
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~E~~~~~~~~~~v~LG~~ILR~ETA~i~als~i~~~~~ 232 (234)
T 1z85_A 161 -NVITLDLDASQNLLDANLEGSITVVVGPEG-GFSEKERELLRSSTTIVSLGKKILRFETAAILTVGYIALKKQ 232 (234)
T ss_dssp -EEEEECC---CCCSSSCCCSSEEEEECCTT-CCCHHHHHHHHHHSEEC------CCHHHHHHHHHHHHHHHTT
T ss_pred -CCEEEECCHHHHHCCCCCCCCEEEEECCCC-CCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf -836641201221000023684499989988-999999999984998987899823367299999999999853
No 26
>1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} SCOP: c.116.1.3
Probab=72.56 E-value=3.7 Score=19.07 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=45.4
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCC----------CC-CCCEEEEECCCCCCCCHHHHHHCCCEEEE-CCCCCCCHHHHH
Q ss_conf 2222221000000012333221122----------36-89889997586789877999858939992-789687437899
Q gi|254780603|r 199 LQKMHSWGFQTIGLSSDSKKPLEQE----------IK-NDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVS 266 (282)
Q Consensus 199 l~~~~~~~~~i~~~~~~~~~~~~~~----------~~-~~~~~lv~G~E~~Gl~~~~~~~~d~~v~I-p~~~~~~SLNvs 266 (282)
++.++... .++.+|..|.. ++.. +. ..+.+|++|.- .|+++++.+.||..+++ ||. +.=.
T Consensus 66 l~~i~~~~-~~I~LDe~Gk~-~sS~~fA~~i~~~~~~g~~~i~FiIGGa-~G~~~~~~~~a~~~lSls~mT-----fpH~ 137 (161)
T 1vh0_A 66 LAKIKPQS-TVITLEIQGKM-LSSEGLAQELNQRMTQGQSDFVFVIGGS-NGLHKDVLQRSNYALSFSKMT-----FPHQ 137 (161)
T ss_dssp HHTSCTTS-EEEEEEEEEEC-CCHHHHHHHHHHHHHTTCCEEEEEECBT-TBCCHHHHHHCSEEECSCSSC-----CCHH
T ss_pred HHHHCCCC-EEEEEECCCCC-CCCHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHCCCEEECCCCC-----CCHH
T ss_conf 98618998-79999589888-8869999999999974997489994687-554879998538878756898-----7489
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999876
Q gi|254780603|r 267 NAAAVALYITQNH 279 (282)
Q Consensus 267 ~a~ai~l~~~~~~ 279 (282)
.|.-|++-+++|-
T Consensus 138 lar~~l~EQlYRa 150 (161)
T 1vh0_A 138 MMRVVLIEQVYRA 150 (161)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 27
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=68.14 E-value=5.4 Score=18.14 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=43.4
Q ss_pred CCHHHHCCCCCCC----CC----CC--CCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEC-CCCCCCHHHHHHHHHHHHH
Q ss_conf 0000000123332----21----12--236898899975867898779998589399927-8968743789999999999
Q gi|254780603|r 206 GFQTIGLSSDSKK----PL----EQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALY 274 (282)
Q Consensus 206 ~~~i~~~~~~~~~----~~----~~--~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip-~~~~~~SLNvs~a~ai~l~ 274 (282)
+..++.+|..|.. .+ .+ ..-...++|++|.- .|+++.+++.||..+++- |+ +.=..|.-|++-
T Consensus 70 ~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa-~G~~~~~~~~a~~~lSls~mT-----~pH~larv~L~E 143 (167)
T 1to0_A 70 DAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGS-LGLSDTVMKRADEKLSFSKMT-----FPHQLMRLILVE 143 (167)
T ss_dssp TSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCS-SCCCHHHHHHCSEEEESCSSC-----CCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHCCCEEECCCCC-----CCHHHHHHHHHH
T ss_conf 98799981899753899999999999865996289996688-888988996268577657888-----618999999999
Q ss_pred HHHHH
Q ss_conf 99876
Q gi|254780603|r 275 ITQNH 279 (282)
Q Consensus 275 ~~~~~ 279 (282)
+++|-
T Consensus 144 QlYRa 148 (167)
T 1to0_A 144 QIYRA 148 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 28
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=57.28 E-value=5.9 Score=17.92 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=43.7
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCC----------CCCCEEEEECCCCCCCCHHHHHHCCCEEEE-CCCCCCCHHHHHH
Q ss_conf 22222210000000123332211223----------689889997586789877999858939992-7896874378999
Q gi|254780603|r 199 LQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSN 267 (282)
Q Consensus 199 l~~~~~~~~~i~~~~~~~~~~~~~~~----------~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~I-p~~~~~~SLNvs~ 267 (282)
++.++. +-.++.+|..|.. ++... -..+.+||+|.- .|+++++.+.+|..+++ ||+ |.=..
T Consensus 59 l~~i~~-~~~vI~LDe~Gk~-~sS~~fA~~L~~~~~~g~~i~FvIGGa-~Gl~~~~~~~a~~~lSlS~mT-----~pH~l 130 (163)
T 1o6d_A 59 TNRILP-GSFVMVMDKRGEE-VSSEEFADFLKDLEMKGKDITILIGGP-YGLNEEIFAKAHRVFSLSKMT-----FTHGM 130 (163)
T ss_dssp HTTCCT-TCEEEEEEEEEEE-CCHHHHHHHHHHHHHHTCCEEEEECCT-TCCCGGGGGGCSEEEECCSSC-----CCHHH
T ss_pred HHCCCC-CCEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECC-CCCCHHHHHHHCCEEECCCCC-----CHHHH
T ss_conf 950799-9889997478787-786999999999983688569999678-887999998618689568888-----61899
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999876
Q gi|254780603|r 268 AAAVALYITQNH 279 (282)
Q Consensus 268 a~ai~l~~~~~~ 279 (282)
|.-|++-+++|-
T Consensus 131 arv~L~EQiYRa 142 (163)
T 1o6d_A 131 TVLIVLEQIFRA 142 (163)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 29
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=56.32 E-value=2.6 Score=19.93 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 068899999998642001100136863200000134443333211012
Q gi|254780603|r 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 (282)
Q Consensus 143 dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~ 190 (282)
++.=+-.+.|.|.|+|++|+++..+ .+|-+.. ..+...+|+-
T Consensus 205 ~r~~v~~la~aa~a~G~dGlfiE~H-p~P~~A~-----sD~~~~l~l~ 246 (262)
T 1zco_A 205 RRSLVIPLAKAAYAIGADGIMVEVH-PEPEKAL-----SDSQQQLTFD 246 (262)
T ss_dssp SGGGHHHHHHHHHHTTCSEEEEEBC-SSGGGCS-----SCTTTCBCHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCC-----CCCCCCCCHH
T ss_conf 6767999999999829998999818-7802178-----8741367999
No 30
>2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} SCOP: c.116.1.6 PDB: 2v3k_A*
Probab=53.82 E-value=9.9 Score=16.64 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=48.3
Q ss_pred CCCCCHHHHCCCCCCCC-C----CCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22100000001233322-1----122368988999758678987799985893999278968743789999999999998
Q gi|254780603|r 203 HSWGFQTIGLSSDSKKP-L----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 (282)
Q Consensus 203 ~~~~~~i~~~~~~~~~~-~----~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~ 277 (282)
...|..+++++..|... . ....-.++.++++|.=.+|=.....+..|+.++|-- .+|-.+++++-+++++-
T Consensus 171 lp~~~r~I~LS~~G~~v~~~~~a~~l~~~~~i~~vIGafa~Gd~~~~~~yvde~ISISd----YpLSa~~v~sri~~~~E 246 (258)
T 2v3j_A 171 LPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSN----YPLSASVACSKFCHGAE 246 (258)
T ss_dssp SCSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSCCTTTTTTTCSCEEBSCS----SCCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHCEEEEEEEC----CCHHHHHHHHHHHHHHH
T ss_conf 78999899989987663799999873447987999813548985512000505899728----85419999999999999
Q ss_pred HH
Q ss_conf 76
Q gi|254780603|r 278 NH 279 (282)
Q Consensus 278 ~~ 279 (282)
+.
T Consensus 247 ~~ 248 (258)
T 2v3j_A 247 DA 248 (258)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
No 31
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.10 c.116.1.2
Probab=39.97 E-value=12 Score=16.14 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=40.8
Q ss_pred CCCCCCCCCH-HHHCCCCCCCCCCCC--------CCCCCEEEEECCCCCCCCHHHHHHCCCEEE-ECCCC--CCCHHHHH
Q ss_conf 2222221000-000012333221122--------368988999758678987799985893999-27896--87437899
Q gi|254780603|r 199 LQKMHSWGFQ-TIGLSSDSKKPLEQE--------IKNDKIALILGAEGKGLRPKTQETATSMAH-LHMPG--IIKALNVS 266 (282)
Q Consensus 199 l~~~~~~~~~-i~~~~~~~~~~~~~~--------~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~-Ip~~~--~~~SLNvs 266 (282)
.+.+...||- +++++..|. ++.+. .-.+...+|||+-..|+++- ..|..+. +|..| .++ .-=|
T Consensus 175 ~~~~~~~gyd~~I~TS~~G~-~~~~~~~~~~~~~~~~~~~lvvFGgp~~Gl~e~---~~D~~lNt~P~QGsrtIR-tEEA 249 (268)
T 1k3r_A 175 AESLKTVGADVVVATSRNAS-PITSILDEVKTRMRGAREAAILFGGPYKGLPEI---DADIWVNTLPGQCTETVR-TEEA 249 (268)
T ss_dssp HHHHHHHCCSEEEEECTTSC-BTTTSHHHHHHHHTTCSEEEEECCCSSSCCCSC---CCSEEEBSSTTCSSSCCC-HHHH
T ss_pred HHCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHH---HCCEEEECCCCCCCCCCH-HHHH
T ss_conf 65642479986999899988-541001211224567870899989965576434---178589838998887661-8999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999987614
Q gi|254780603|r 267 NAAAVALYITQNHFA 281 (282)
Q Consensus 267 ~a~ai~l~~~~~~~~ 281 (282)
+-.+..+...-++++
T Consensus 250 v~itLa~ln~~~~~~ 264 (268)
T 1k3r_A 250 VLATLSVFNMLTQID 264 (268)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999998188652
No 32
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=38.47 E-value=13 Score=15.98 Aligned_cols=110 Identities=10% Similarity=-0.037 Sum_probs=62.3
Q ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHH---HCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 66506-88723432068899999998642---0011-0013686320000013444333321101222322112222222
Q gi|254780603|r 130 RNSQL-LMVLDHVNDPHNIGAILRSAVAF---SCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 (282)
Q Consensus 130 ~~~~~-~i~ld~i~dp~NlG~I~Rta~a~---g~~~-vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~ 204 (282)
+...+ |++-.++.||..+-.-++.|.+. |.+- |++..+.+...++... .++.-....++.++++.+++
T Consensus 14 ~~~~i~Iivt~Gp~d~~ra~~af~lA~~A~~~G~eV~iFl~~~gV~l~~~~~~-------~~~~~~~~~~l~e~l~~~~~ 86 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXGPXLLDXXWQ-------EEERXXGGNPFIHFFDMAXE 86 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGGGBHHHH-------HHHHHHCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHH-------HHHCCCCCCCHHHHHHHHHH
T ss_conf 66369999946999879999999999999978992999996066988676643-------33134688899999999997
Q ss_pred CCCHHHHCCCCC-C-CCCCCCCCCCCEEEEECCCCCCCCH--HHHHHCCCEE
Q ss_conf 100000001233-3-2211223689889997586789877--9998589399
Q gi|254780603|r 205 WGFQTIGLSSDS-K-KPLEQEIKNDKIALILGAEGKGLRP--KTQETATSMA 252 (282)
Q Consensus 205 ~~~~i~~~~~~~-~-~~~~~~~~~~~~~lv~G~E~~Gl~~--~~~~~~d~~v 252 (282)
.|..+++...-. . ..+.+-++.+ |-|-.|.+. ++...+|..+
T Consensus 87 ~Gv~i~vC~~~~~~~~gi~~~~l~~------g~~i~g~~~l~~~~~eaD~vl 132 (134)
T 3mc3_A 87 NGVXMYVCVQSLXDMCHMXEDDVVE------GIELVGGSTLIDLTLEADRTL 132 (134)
T ss_dssp TTCEEEEEHHHHHHTTCCCGGGBCT------TCEEECTHHHHHHHHHSSEEE
T ss_pred CCCCEEEEHHHHHHHCCCCCCCCCC------CCEEECHHHHHHHHHHCCCEE
T ss_conf 7980997268899848854212335------765508999999999629478
No 33
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=36.63 E-value=5.9 Score=17.91 Aligned_cols=45 Identities=29% Similarity=0.509 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 889999999864200110013686320000013444333321101222322
Q gi|254780603|r 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195 (282)
Q Consensus 145 ~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~ 195 (282)
.-+-.+.|.|.++|++|+++.-+ .||-+. =..+.-.+++-...++
T Consensus 202 ~~v~~la~aA~a~G~dGl~iE~H-~dP~~A-----lsD~~q~l~~~~l~~l 246 (267)
T 2nwr_A 202 EFIFPLIRAAVAVGCDGVFMETH-PEPEKA-----LSDASTQLPLSQLEGI 246 (267)
T ss_dssp GGHHHHHHHHHHHCCSEEEEEEE-SCGGGC-----SSCTTTCEEGGGHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC-CCCCCC-----CCCCCCCCCHHHHHHH
T ss_conf 66999999999839987999837-983436-----7860027799999999
No 34
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein structure initiative; 2.10A {Streptococcus pneumoniae TIGR4} SCOP: a.248.1.1
Probab=32.86 E-value=5.2 Score=18.21 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 320000013444333321101---222322112222222100000001
Q gi|254780603|r 169 SPSESAVLAKSASGALEHIPY---IRISNLTDALQKMHSWGFQTIGLS 213 (282)
Q Consensus 169 ~~~~~~~~~ras~Ga~~~l~~---~~~~~~~~~l~~~~~~~~~i~~~~ 213 (282)
+..+.--..|-++|-...++- .+.-|+..+++.|.++||.++|.+
T Consensus 34 f~~l~~P~~~~t~gr~~TL~~aa~~~gidld~l~~~L~~~gf~v~g~d 81 (81)
T 2fi0_A 34 FKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGYEVIGLD 81 (81)
T ss_dssp CGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTCEEECCC
T ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCEEECCC
T ss_conf 975478278864220185999998849999999999998699730789
No 35
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei 1710B}
Probab=31.13 E-value=23 Score=14.53 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8899999998642
Q gi|254780603|r 145 HNIGAILRSAVAF 157 (282)
Q Consensus 145 ~NlG~I~Rta~a~ 157 (282)
+|+.+=+|....+
T Consensus 144 ~Ni~aR~R~~~ly 156 (285)
T 3dpi_A 144 GNIKARERMIAQY 156 (285)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 1579988878899
No 36
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=27.65 E-value=21 Score=14.71 Aligned_cols=30 Identities=7% Similarity=-0.032 Sum_probs=18.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8872343206889999999864200110013686
Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168 (282)
Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~ 168 (282)
+++|.....|.+ .|..+.-|++-++.+...
T Consensus 231 v~IC~D~~~Pe~----~r~la~~GAdii~~Ps~~ 260 (405)
T 2vhh_A 231 VNICYGRHHPQN----WMMFGLNGAEIVFNPSAT 260 (405)
T ss_dssp ECCGGGGGCHHH----HHHHHHTTCSEEEEEECC
T ss_pred EEECCCCCCHHH----HHHHHCCCCEEEEECCCC
T ss_conf 876445555167----656421898199956877
No 37
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A*
Probab=22.29 E-value=18 Score=15.17 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 99999864200110013
Q gi|254780603|r 149 AILRSAVAFSCDGIITT 165 (282)
Q Consensus 149 ~I~Rta~a~g~~~vil~ 165 (282)
.+.|.|.|+|++|+++.
T Consensus 294 ~larAAvA~GaDGlfiE 310 (350)
T 1vr6_A 294 PLSRAAIAVGAHGIIVE 310 (350)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
T ss_conf 99999998299889997
Done!