HHSEARCH alignment of GI: 254780603 and SCOP domain: d1ipaa2

Alignment

Probab=99.25  E-value=1.2e-11  Score=83.57  Aligned_cols=95  Identities=13%  Similarity=0.172  Sum_probs=72.8

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHH----HHHCCCCEEEECH
Q ss_conf             222376567776543112211128819998578899999789818999997378433543455----4326996999768
Q gi|254780603|r   23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA----NLPHPFPVKTVPP   98 (282)
Q Consensus        23 ~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~~~~----~l~~~~~I~~v~~   98 (282)
                      .++.||.+|++.+|.++ |+|++.|.|+|||.+.|.+||.+++. +..+|+++..........    ....+++++.++.
T Consensus         4 tS~~N~~iK~~~~L~~~-k~R~~~g~flvEG~r~v~eal~~g~~-i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vs~   81 (105)
T d1ipaa2           4 TSTANPRIKELARLLER-KHRDSQRRFLIEGAREIERALQAGIE-LEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSE   81 (105)
T ss_dssp             CCTTSHHHHHHHGGGSH-HHHHHHTEEEEESHHHHHHHHHTTCC-EEEEEEETTCCCHHHHHHHHCC-----CEEEEECH
T ss_pred             CCCCCHHHHHHHHHHCC-CCHHHHCEEEEECHHHHHHHHHCCCC-CEEEEEEHHHHCCCHHHHHHHHHHCCCCEEEEECH
T ss_conf             17899899999988524-44236095999808999999986997-13899962330531578999875407972999899


Q ss_pred             HHHHHHHCCCCCCCCCCEEEEC
Q ss_conf             9987752477777744202411
Q gi|254780603|r   99 QTIDKIVGKEAVHQGLALETAP  120 (282)
Q Consensus        99 ~~l~~i~~~~~~hqGi~a~~~~  120 (282)
                      +.|+++++.+ +|||+++.+..
T Consensus        82 ~~~~~ls~~~-tpqGiiAv~~~  102 (105)
T d1ipaa2          82 AVLKKLSVRD-NPAGLIALARM  102 (105)
T ss_dssp             HHHHHHCCSS-SCCSEEEEEEC
T ss_pred             HHHHHHHCCC-CCCCEEEEEEC
T ss_conf             9999986899-98708999956

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: RNA 2'-O ribose methyltransferase substrate binding domain
domain: RrmA (RrmH), N-terminal domain
species: Thermus thermophilus [TaxId: 274]