HHSEARCH alignment of GI: 254780603 and SCOP domain: d1mxia_

Alignment

Probab=100.00  E-value=5.8e-38  Score=234.31  Aligned_cols=146  Identities=18%  Similarity=0.155  Sum_probs=127.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf             68872343206889999999864200110013686320000013444333321101222322112222222100000001
Q gi|254780603|r  134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS  213 (282)
Q Consensus       134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~  213 (282)
                      +-|||++++||+|+|+|+|||+|||++.+++.+.+.++...++.++++++++..++....+...+....+.  .+.+...
T Consensus         2 ~~ivL~~p~~P~NlGai~Rta~afGv~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   79 (156)
T d1mxia_           2 LDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKP--KRLFALT   79 (156)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCTTCHHHHTTSCCGGGSSSCEEESSHHHHHHHHCC--SEEEEEC
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCCCCCEEEEEEEECHHHHHHHHHHC--CCEEEEE
T ss_conf             39999189899919999999997599599991588763112122022554134324530036666664302--4302220


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH--CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             2333221122368988999758678987799985--8939992789687437899999999999987614
Q gi|254780603|r  214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA  281 (282)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~--~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~  281 (282)
                      ..+..++.+..++.+.+||||+|++|+|+++++.  ||+.|+|||.+.++|||||+|+||+|||..||++
T Consensus        80 ~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~RQ~~  149 (156)
T d1mxia_          80 TKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLG  149 (156)
T ss_dssp             TTCSSBGGGSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHHCC
T ss_conf             0122310102456421799725777579999942558869984899999740799999999999998359

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue)
species: Haemophilus influenzae [TaxId: 727]