HHSEARCH alignment of GI: 254780603 and SCOP domain: d1v2xa_

Alignment
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=4.2e-43  Score=263.74  Aligned_cols=150  Identities=23%  Similarity=0.341  Sum_probs=137.9

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             66506887234320688999999986420011001368632000001344433332110122232211222222210000
Q gi|254780603|r  130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT  209 (282)
Q Consensus       130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i  209 (282)
                      +.++++|+||+|+||+|+|+|+|||+|||++.+++...++++++  ..++++|+.+++++..+.++.++++.+++.|+++
T Consensus        19 ~~~~~~vvLd~i~~p~NiG~IiRta~afG~~~v~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~i   96 (191)
T d1v2xa_          19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT--FNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTV   96 (191)
T ss_dssp             CBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCC--CCSSCSSGGGTSEEEEESSHHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE--EEECCHHHHEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf             79997999957988754899999998512232012488645301--1000011201201222330256788886368742


Q ss_pred             HHCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0001233-32211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r  210 IGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA  281 (282)
Q Consensus       210 ~~~~~~~-~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~  281 (282)
                      ++++..+ ..++++++++.+.+||||+|++|||+++++.||+.|+|||.+.++|||||+|+||+|||..||+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~lV~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvsvAa~I~lyE~~rq~~  169 (191)
T d1v2xa_          97 YATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL  169 (191)
T ss_dssp             EEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             1111112233221124788808997366653659999837867996899996633299999999999999998


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: tRNA (Gm18) methyltransferase TrmH
species: Thermus thermophilus [TaxId: 274]