Query gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 282
No_of_seqs 133 out of 4339
Neff 8.0
Searched_HMMs 13730
Date Wed Jun 1 10:34:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780603.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gz0a1 c.116.1.1 (A:78-243) R 100.0 0 0 292.0 10.5 152 130-281 15-166 (166)
2 d1ipaa1 c.116.1.1 (A:106-263) 100.0 4.2E-45 0 275.2 10.8 148 132-281 10-157 (158)
3 d1v2xa_ c.116.1.1 (A:) tRNA (G 100.0 4.2E-43 0 263.7 8.9 150 130-281 19-169 (191)
4 d1mxia_ c.116.1.1 (A:) Hypothe 100.0 5.8E-38 4.2E-42 234.3 9.4 146 134-281 2-149 (156)
5 d1ipaa2 d.79.3.3 (A:1-105) Rrm 99.2 1.2E-11 8.6E-16 83.6 8.4 95 23-120 4-102 (105)
6 d1gz0a2 d.79.3.3 (A:2-77) RlmB 99.1 1.5E-10 1.1E-14 77.3 7.2 71 49-120 2-75 (76)
7 d2o3aa1 c.116.1.8 (A:1-167) Un 96.9 0.00082 6E-08 38.7 5.6 121 142-276 14-140 (167)
8 d2qwva1 c.116.1.7 (A:5-205) Un 95.6 0.0021 1.6E-07 36.3 1.8 83 192-281 113-199 (201)
9 d2qmma1 c.116.1.7 (A:95-288) U 93.6 0.018 1.3E-06 30.9 2.5 124 131-279 59-192 (194)
10 d1v6za2 c.116.1.5 (A:67-228) H 89.6 0.52 3.8E-05 22.6 7.4 138 135-280 7-160 (162)
11 d1nxza2 c.116.1.5 (A:74-247) H 88.8 0.32 2.4E-05 23.8 4.8 127 138-269 10-156 (174)
12 d1vhka2 c.116.1.5 (A:74-253) H 86.1 0.27 2E-05 24.2 3.1 141 135-277 8-177 (180)
13 d1k3ra2 c.116.1.2 (A:1-92,A:16 77.3 0.9 6.6E-05 21.2 3.1 111 143-258 24-169 (191)
14 d1vh0a_ c.116.1.3 (A:) Hypothe 69.5 2.9 0.00021 18.3 4.1 73 199-279 64-148 (157)
15 d1to0a_ c.116.1.3 (A:) Hypothe 54.3 5.6 0.00041 16.7 5.7 69 206-279 70-148 (157)
16 d2v3ka1 c.116.1.6 (A:25-251) E 41.1 9.1 0.00066 15.5 3.5 72 204-279 148-224 (227)
17 d2fi0a1 a.248.1.1 (A:3-81) Hyp 33.4 2.9 0.00021 18.3 -0.8 50 164-213 27-79 (79)
18 d1hkva2 c.1.6.1 (A:46-310) Dia 25.9 5.5 0.0004 16.7 -0.5 15 89-103 41-55 (265)
19 d1vmaa2 c.37.1.10 (A:82-294) G 20.5 21 0.0015 13.4 4.1 60 133-194 132-191 (213)
No 1
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=292.01 Aligned_cols=152 Identities=33% Similarity=0.529 Sum_probs=147.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 66506887234320688999999986420011001368632000001344433332110122232211222222210000
Q gi|254780603|r 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 (282)
Q Consensus 130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i 209 (282)
...+++|+||+|+||+|+|+|+|||+|||+++|++...+++++++++.|+|+|+++++|+.++.++.++++.+++.++++
T Consensus 15 ~~~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~~~~~~r~s~g~~~~v~~~~~~~~~~~l~~~~~~~~~~ 94 (166)
T d1gz0a1 15 LDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWI 94 (166)
T ss_dssp CSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHEECCCCCEEECEEECCCHHHHHHHHCCCCCCC
T ss_conf 68987999957888655999999998528864654025431100123123137503765066399999998701243211
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 000123332211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
++++.....++.+++++++.+||||+|++|||+++++.||+.|+|||.+.++|||||+|+||+|||+.|||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvs~A~~I~lye~~rqr~ 166 (166)
T d1gz0a1 95 VGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 166 (166)
T ss_dssp EEECTTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCC
T ss_conf 123454445478851468738996667678779999868989997096899754699999999999997559
No 2
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=4.2e-45 Score=275.16 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=138.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 50688723432068899999998642001100136863200000134443333211012223221122222221000000
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~ 211 (282)
.+++|+||+|+||+|+|+|+|||++||++.|++.+ ++++++++++|+|+|+++++++....+ .++++.+++.|+++++
T Consensus 10 ~~~~lvld~i~dP~NlGai~Rta~~fG~~~v~~~~-~~~~~~~~~~r~s~g~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 87 (158)
T d1ipaa1 10 DALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAG-GVDLYSPQVIRNSTGVVFSLRTLAASE-SEVLDWIKQHNLPLVA 87 (158)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEES-CCCTTCHHHHHHTTTGGGTSCEEEECH-HHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHCC-CCCCCCHHHHEECCCCEEEECCCCCCH-HHHHHHHHHHCCCCCC
T ss_conf 98899996897875389999999860240122205-644333346201124022311001136-9999999862134322
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0123332211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
++.++...+++.+++++.+||||+|++|||+++++.||..|+|||.+.++|||||+|+||+|||+.|||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~lvfG~E~~Gls~~~l~~~d~~v~IP~~g~~~SLNvs~A~aI~lyE~~RQr~ 157 (158)
T d1ipaa1 88 TTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEALRQRL 157 (158)
T ss_dssp ECTTCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHC
T ss_conf 2222222100002476628997455566679999848879997689999737699999999999997533
No 3
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=4.2e-43 Score=263.74 Aligned_cols=150 Identities=23% Similarity=0.341 Sum_probs=137.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 66506887234320688999999986420011001368632000001344433332110122232211222222210000
Q gi|254780603|r 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 (282)
Q Consensus 130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i 209 (282)
+.++++|+||+|+||+|+|+|+|||+|||++.+++...++++++ ..++++|+.+++++..+.++.++++.+++.|+++
T Consensus 19 ~~~~~~vvLd~i~~p~NiG~IiRta~afG~~~v~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~i 96 (191)
T d1v2xa_ 19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT--FNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTV 96 (191)
T ss_dssp CBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCC--CCSSCSSGGGTSEEEEESSHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE--EEECCHHHHEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 79997999957988754899999998512232012488645301--1000011201201222330256788886368742
Q ss_pred HHCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0001233-32211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r 210 IGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 210 ~~~~~~~-~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
++++..+ ..++++++++.+.+||||+|++|||+++++.||+.|+|||.+.++|||||+|+||+|||..||+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~lV~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvsvAa~I~lyE~~rq~~ 169 (191)
T d1v2xa_ 97 YATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL 169 (191)
T ss_dssp EEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1111112233221124788808997366653659999837867996899996633299999999999999998
No 4
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=100.00 E-value=5.8e-38 Score=234.31 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=127.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 68872343206889999999864200110013686320000013444333321101222322112222222100000001
Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213 (282)
Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~ 213 (282)
+-|||++++||+|+|+|+|||+|||++.+++.+.+.++...++.++++++++..++....+...+....+. .+.+...
T Consensus 2 ~~ivL~~p~~P~NlGai~Rta~afGv~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 79 (156)
T d1mxia_ 2 LDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKP--KRLFALT 79 (156)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCTTCHHHHTTSCCGGGSSSCEEESSHHHHHHHHCC--SEEEEEC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCCCCCEEEEEEEECHHHHHHHHHHC--CCEEEEE
T ss_conf 39999189899919999999997599599991588763112122022554134324530036666664302--4302220
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH--CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2333221122368988999758678987799985--8939992789687437899999999999987614
Q gi|254780603|r 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 214 ~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~--~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
..+..++.+..++.+.+||||+|++|+|+++++. ||+.|+|||.+.++|||||+|+||+|||..||++
T Consensus 80 ~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvs~A~aI~lyE~~RQ~~ 149 (156)
T d1mxia_ 80 TKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLG 149 (156)
T ss_dssp TTCSSBGGGSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHHCC
T ss_conf 0122310102456421799725777579999942558869984899999740799999999999998359
No 5
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.25 E-value=1.2e-11 Score=83.57 Aligned_cols=95 Identities=13% Similarity=0.172 Sum_probs=72.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHH----HHHCCCCEEEECH
Q ss_conf 222376567776543112211128819998578899999789818999997378433543455----4326996999768
Q gi|254780603|r 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA----NLPHPFPVKTVPP 98 (282)
Q Consensus 23 ~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~~~~~----~l~~~~~I~~v~~ 98 (282)
.++.||.+|++.+|.++ |+|++.|.|+|||.+.|.+||.+++. +..+|+++.......... ....+++++.++.
T Consensus 4 tS~~N~~iK~~~~L~~~-k~R~~~g~flvEG~r~v~eal~~g~~-i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vs~ 81 (105)
T d1ipaa2 4 TSTANPRIKELARLLER-KHRDSQRRFLIEGAREIERALQAGIE-LEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSE 81 (105)
T ss_dssp CCTTSHHHHHHHGGGSH-HHHHHHTEEEEESHHHHHHHHHTTCC-EEEEEEETTCCCHHHHHHHHCC-----CEEEEECH
T ss_pred CCCCCHHHHHHHHHHCC-CCHHHHCEEEEECHHHHHHHHHCCCC-CEEEEEEHHHHCCCHHHHHHHHHHCCCCEEEEECH
T ss_conf 17899899999988524-44236095999808999999986997-13899962330531578999875407972999899
Q ss_pred HHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 9987752477777744202411
Q gi|254780603|r 99 QTIDKIVGKEAVHQGLALETAP 120 (282)
Q Consensus 99 ~~l~~i~~~~~~hqGi~a~~~~ 120 (282)
+.|+++++.+ +|||+++.+..
T Consensus 82 ~~~~~ls~~~-tpqGiiAv~~~ 102 (105)
T d1ipaa2 82 AVLKKLSVRD-NPAGLIALARM 102 (105)
T ss_dssp HHHHHHCCSS-SCCSEEEEEEC
T ss_pred HHHHHHHCCC-CCCCEEEEEEC
T ss_conf 9999986899-98708999956
No 6
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.07 E-value=1.5e-10 Score=77.28 Aligned_cols=71 Identities=21% Similarity=0.269 Sum_probs=58.8
Q ss_pred EEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCC-CHHH--HHHCCCCEEEECHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 999857889999978981899999737843354-3455--43269969997689987752477777744202411
Q gi|254780603|r 49 LFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120 (282)
Q Consensus 49 ~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~-~~~~--~l~~~~~I~~v~~~~l~~i~~~~~~hqGi~a~~~~ 120 (282)
.+|||.|+|.|||+++++.+..+|++++..++. .... ...++++|..++++.|+++++. .+|||+++.+.|
T Consensus 2 e~IyG~haV~eaL~~~~r~i~~l~v~~~~~~~~~~~i~~~a~~~~i~i~~v~~~~Ld~l~~~-~~HQGVva~v~P 75 (76)
T d1gz0a2 2 EMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDG-AVHQGIIARVKP 75 (76)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEEEECSHHHHHTTTS-CCCTTEEEEECC
T ss_pred CEEEEHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHCCC-CCCCEEEEEEEC
T ss_conf 68987499999986898764799996233658899999999976998799799999874599-999868999738
No 7
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=96.92 E-value=0.00082 Score=38.65 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 20688999999986420011001368632000001344---433332110122232211222222210000000123332
Q gi|254780603|r 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS---ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218 (282)
Q Consensus 142 ~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ra---s~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 218 (282)
+|+.=.--+.=||-|||++++++.+. |+--...++. .=|.-|.+. . .++.+.+++.+-.++.+++-|..
T Consensus 14 RD~RiTTHvaLtARAfGA~~i~l~~~--D~~~~etv~~V~~r~GG~f~~~-----~-~~~~~~~~~~~G~vVHLTMYG~~ 85 (167)
T d2o3aa1 14 RDKRISTHVALTARAFGAKGIYFDTE--DKSVFESVRDVVERWGGDFFIK-----A-VSWKKLLREFDGLKVHLTMYGIP 85 (167)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEESSC--CHHHHHHHHHHHHHHCSCCEEE-----E-CCHHHHHHHCCSEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCC--CHHHHHHHHHHHHHHCCCEEEE-----E-CCHHHHHHHCCCEEEEEECCCCC
T ss_conf 67632468889999726876887577--6468888999998509855898-----5-47889722269979996068985
Q ss_pred ---CCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ---2112236898899975867898779998589399927896874378999999999999
Q gi|254780603|r 219 ---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276 (282)
Q Consensus 219 ---~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~ 276 (282)
.+.++...++..+|+|.|- +|.++-+.||+.|.|--...-| | .|.||+|-.+
T Consensus 86 ~~~~~~~Ir~~~~ilvVVGaeK--VP~evyelADyNVaVgNQPHSE---V-AALAiFLDrl 140 (167)
T d2o3aa1 86 LPQKLEEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSE---V-AALAVFLDRV 140 (167)
T ss_dssp HHHHHHHHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCH---H-HHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEECCCC--CCHHHHHHCCCCEECCCCCCHH---H-HHHHHHHHHH
T ss_conf 2777643136897799989860--7899984346425507887089---9-9999999986
No 8
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}
Probab=95.60 E-value=0.0021 Score=36.26 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC----CCEEEECCCCCCCHHHHHH
Q ss_conf 232211222222210000000123332211223689889997586789877999858----9399927896874378999
Q gi|254780603|r 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKALNVSN 267 (282)
Q Consensus 192 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~----d~~v~Ip~~~~~~SLNvs~ 267 (282)
..++.++++.+. .++++|-++.+|. ++.+..++.+.+||+| -..|++++-.+.. +..+++ +-.+|=.++
T Consensus 113 ~~~~e~~l~e~~-e~~~~~~Lde~G~-~i~~~~~~~~~~FILs-Dh~~~~~~e~~~L~~~g~~~iSL----Gp~~L~ash 185 (201)
T d2qwva1 113 TISFEALLGELA-EHHSLYMMDKKGD-SIRDIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQ 185 (201)
T ss_dssp CCCHHHHHHHHH-TTSEEEEEEEEEE-ETTTSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHH
T ss_pred CCCHHHHHHHHH-CCCCEEEECCCCC-CHHHCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCEEEEE----CCHHHHHHH
T ss_conf 889999999985-4896899889999-6633668899879970-89998978999887528704765----607887758
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999987614
Q gi|254780603|r 268 AAAVALYITQNHFA 281 (282)
Q Consensus 268 a~ai~l~~~~~~~~ 281 (282)
+.+|+-|++.||-.
T Consensus 186 cI~ivH~~LDr~~~ 199 (201)
T d2qwva1 186 CVTLIHNEIDHQEA 199 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999998620001
No 9
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=93.62 E-value=0.018 Score=30.91 Aligned_cols=124 Identities=16% Similarity=0.260 Sum_probs=77.6
Q ss_pred CCCEEEEECCC------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 65068872343------206889999999864200110013686320000013444333321101222322112222222
Q gi|254780603|r 131 NSQLLMVLDHV------NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204 (282)
Q Consensus 131 ~~~~~i~ld~i------~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~ 204 (282)
.++..|.+++- -|=.+++..++.|..--. .+.. ..++.|- +....++.++++++.+
T Consensus 59 ~p~r~I~f~G~~lk~l~pdErSia~~I~kaL~~~~------~~~~-------~e~~pGI-----~vs~~~~e~~l~e~~~ 120 (194)
T d2qmma1 59 SPPKSILIKGDEVRRMSPDERNVAGHIKKALAVEC------GKSW-------KKVHSGV-----YVSRKGLEELIEELSE 120 (194)
T ss_dssp SCCEEEEEETTTCCSCCSSHHHHHHHHHHHHHSCC------CSSC-------EEEETTE-----EEECCCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC------CCCC-------EEECCCE-----EEECCCHHHHHHHHHC
T ss_conf 99735898463245678117889999999836788------8873-------1305898-----9918889999999864
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH----CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1000000012333221122368988999758678987799985----89399927896874378999999999999876
Q gi|254780603|r 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 (282)
Q Consensus 205 ~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~----~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~ 279 (282)
+..+|-++.+|. ++++..++.+.++|+| -..|++++-.+. ....+++ +-.+|=.+++.+|+-|++.|-
T Consensus 121 -~~~~~~Ld~~G~-~i~~~~~~~~~~FILs-Dh~~l~~~e~~~L~~~~~~~iSL----Gp~~L~a~hcI~ivh~~LDr~ 192 (194)
T d2qmma1 121 -KYSIIYLKEDGV-DISNAQLPPNPLFVIG-DHEGLTEEQEKVVERYAALKLSL----SPLSLLAEQCVVIAHHHLDRL 192 (194)
T ss_dssp -HSEEEEEEEEEE-EGGGSCCCSSEEEEEE-CTTCCCHHHHHHHHTTCSEEEEC----CSSCCCHHHHHHHHHHHHHHH
T ss_pred -CCCEEEECCCCC-CCCCCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCEEEEC----CCCCCCHHHHHHHHHHHHHHC
T ss_conf -696899889898-6222336999869975-89998867888776427714753----654225346696999988650
No 10
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=89.63 E-value=0.52 Score=22.61 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=69.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCC--CHHHHHH---HHHHHHH-----HHCC-CCCCCCCCCCCC
Q ss_conf 8872343206889999999864200110--013686320--0000134---4433332-----1101-222322112222
Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPS--ESAVLAK---SASGALE-----HIPY-IRISNLTDALQK 201 (282)
Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~--~~~~~~r---as~Ga~~-----~l~~-~~~~~~~~~l~~ 201 (282)
+.++-.+-.+.++--|++-|.=+|++.+ +.++++... ...+.-| ....|.. ++|- ....++.++++.
T Consensus 7 i~L~~~l~K~~~~~~il~k~tELGV~~i~p~~sers~~k~~~~~k~~r~~~i~~~A~~Qs~r~~lP~i~~~~~l~~~~~~ 86 (162)
T d1v6za2 7 VVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQV 86 (162)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCCC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 89999314740899999999952818799997346302220213323779999999885144578710256588997552
Q ss_pred CCCCCCHHHHCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2221000000012333221-12236898899975867898779998589--39992789687437899999999999987
Q gi|254780603|r 202 MHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQN 278 (282)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~ 278 (282)
... +.+..+..... ...+..++.++++|.|| |.+++-++... ....+-+...+ |=+-+|+-.++--++.
T Consensus 87 ~~~-----~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~Ei~~l~~~g~~~v~LG~~I--LR~ETA~i~als~~~~ 158 (162)
T d1v6za2 87 AQG-----LVAHVGATARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRRI--LRAETAALALLALCTA 158 (162)
T ss_dssp SSE-----EEECTTCCCCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHHHHTEEEECCCSSC--CCHHHHHHHHHHHHTG
T ss_pred CCH-----HHCCCCCCCCCHHHHCCCCCCEEEEECCC-CCCHHHHHHHHHCCCEEEECCCCC--CHHHHHHHHHHHHHHH
T ss_conf 000-----00122321000010103676169982667-878999999998798898779982--2788599999999999
Q ss_pred HH
Q ss_conf 61
Q gi|254780603|r 279 HF 280 (282)
Q Consensus 279 ~~ 280 (282)
+.
T Consensus 159 ~~ 160 (162)
T d1v6za2 159 GE 160 (162)
T ss_dssp GG
T ss_pred HH
T ss_conf 75
No 11
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=88.76 E-value=0.32 Score=23.76 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=66.6
Q ss_pred ECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHH--------HHHHHHHHHHH-----HHCC-CCCCCCCCCCCC
Q ss_conf 2343206889999999864200110--013686320000--------01344433332-----1101-222322112222
Q gi|254780603|r 138 LDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESA--------VLAKSASGALE-----HIPY-IRISNLTDALQK 201 (282)
Q Consensus 138 ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~~~--------~~~ras~Ga~~-----~l~~-~~~~~~~~~l~~ 201 (282)
+-.+-.+.++=-|++-|.=+|++.+ +.++++..-++. +.-+....|.. ++|- ....++.++++.
T Consensus 10 ~~al~k~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~k~~r~~~i~~~A~eQsgr~~lP~i~~~~~l~~~l~~ 89 (174)
T d1nxza2 10 GQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAE 89 (174)
T ss_dssp EEECCSSSCHHHHHHHHHHTTCCEEEEEECTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHHHHC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99512762599999999800803589615764532310667886089999999999873273325531410237788764
Q ss_pred CCCCCCHHHHCCCCCCCCCCCC--CCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHHHH
Q ss_conf 2221000000012333221122--36898899975867898779998589--39992789687437899999
Q gi|254780603|r 202 MHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAA 269 (282)
Q Consensus 202 ~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~a~ 269 (282)
.... ..+..+..+...+.+. ...++.++++|.|| |.+++-++... ....+-+..++ |=+-+|+
T Consensus 90 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~iiIGPEG-Gfs~~E~~~~~~~g~~~v~LG~~I--LR~ETA~ 156 (174)
T d1nxza2 90 NDGA--LKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILLGKRV--LRTETAS 156 (174)
T ss_dssp CSSC--EEEEECTTCSCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSC--CCHHHHH
T ss_pred HCCH--HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CHHHHHH
T ss_conf 0101--44432012344554320278874799974776-869899999997798686689981--2687699
No 12
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=86.09 E-value=0.27 Score=24.20 Aligned_cols=141 Identities=16% Similarity=0.233 Sum_probs=75.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHH--------HHHHHHHHHHH-----HHC-CCCCCCCCCC
Q ss_conf 8872343206889999999864200110--013686320000--------01344433332-----110-1222322112
Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESA--------VLAKSASGALE-----HIP-YIRISNLTDA 198 (282)
Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~~~--------~~~ras~Ga~~-----~l~-~~~~~~~~~~ 198 (282)
+.++-.+-.+..+-.|++-|.=+|++.+ +.++++...++. +.-+....|.. ++| +....++.++
T Consensus 8 i~L~~~l~K~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~~~~r~~~i~~eA~eQsgr~~lP~i~~~~~l~~~ 87 (180)
T d1vhka2 8 VYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQL 87 (180)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 79999403764699999999831815588500356532234114565599999999999986436665435367889999
Q ss_pred CCCCCCCCCHHHHCCCCCCC-C-------CCCCCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCC---CCCHHHH
Q ss_conf 22222210000000123332-2-------112236898899975867898779998589--399927896---8743789
Q gi|254780603|r 199 LQKMHSWGFQTIGLSSDSKK-P-------LEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPG---IIKALNV 265 (282)
Q Consensus 199 l~~~~~~~~~i~~~~~~~~~-~-------~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~---~~~SLNv 265 (282)
++.....+..++........ . ..+..-..+.++++|.|| |.++.-.+... ....+-+.. ++|.= +
T Consensus 88 l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~g~~~v~LG~~ILR~ETA-~ 165 (180)
T d1vhka2 88 LQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQDGVTCGLGPRILRTETA-P 165 (180)
T ss_dssp HHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTTCEEECCCSSCCCTTTH-H
T ss_pred HHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCCCHHHHH-H
T ss_conf 97553444189870333444324678888750577870899966888-989999999998899898789981267749-9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254780603|r 266 SNAAAVALYITQ 277 (282)
Q Consensus 266 s~a~ai~l~~~~ 277 (282)
-+|.|++.|+..
T Consensus 166 i~als~l~~~~~ 177 (180)
T d1vhka2 166 LYALSAISYQTE 177 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999987
No 13
>d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1 (MT0001), dimerisation domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=77.26 E-value=0.9 Score=21.21 Aligned_cols=111 Identities=15% Similarity=0.212 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-------------------------CCCCCCC
Q ss_conf 068899999998642001100136863200000134443333211012-------------------------2232211
Q gi|254780603|r 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-------------------------RISNLTD 197 (282)
Q Consensus 143 dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~-------------------------~~~~~~~ 197 (282)
-..-+|-|+|.|+-|+++.|++-++.... ....++.=.-+++-=|+. ....-..
T Consensus 24 ~t~~~g~iARa~~if~Vdeivv~dd~~~~-~~~~l~~iL~YletP~YLRK~lfp~~~~Lk~aGlLpPL~~p~hv~~~~~~ 102 (191)
T d1k3ra2 24 KTYKVVLIARAASIFGVKRIVIYHDDADG-EARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILPPLRTGYEVLDTRRN 102 (191)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSCC-CHHHHHHHHHHHHSCHHHHHHHCCCCGGGGGGGGCCCCCCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999982165579998279832-76999999998728900101237778662202588873378642012464
Q ss_pred CCCCCCCCCCH-HHHCCCCCCCCCCCC------C--CCCCEEEEECCCCCCCCHHHHHHCCCEEE-ECCCC
Q ss_conf 22222221000-000012333221122------3--68988999758678987799985893999-27896
Q gi|254780603|r 198 ALQKMHSWGFQ-TIGLSSDSKKPLEQE------I--KNDKIALILGAEGKGLRPKTQETATSMAH-LHMPG 258 (282)
Q Consensus 198 ~l~~~~~~~~~-i~~~~~~~~~~~~~~------~--~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~-Ip~~~ 258 (282)
..+.+.+.||- +++++..|+ ++.+. . -.+...+|||+=..||++- ..|..+. +|-.|
T Consensus 103 ~~~~l~~~g~d~~I~TSr~G~-~i~~~~~~~~~~~~~~~~~lvVFGgP~~Gl~~i---~~D~~vNt~P~QG 169 (191)
T d1k3ra2 103 LAESLKTVGADVVVATSRNAS-PITSILDEVKTRMRGAREAAILFGGPYKGLPEI---DADIWVNTLPGQC 169 (191)
T ss_dssp HHHHHHHHCCSEEEEECTTSC-BTTTSHHHHHHHHTTCSEEEEECCCSSSCCCSC---CCSEEEBSSTTCS
T ss_pred CCCCCCCCCCCEEEEECCCCC-CHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHH---HCCEEEECCCCCC
T ss_conf 000221279976998578986-734642111355667873899989965686666---4784897589988
No 14
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=69.49 E-value=2.9 Score=18.33 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=45.9
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCC---------C--CCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEC-CCCCCCHHHHH
Q ss_conf 22222210000000123332211---------2--236898899975867898779998589399927-89687437899
Q gi|254780603|r 199 LQKMHSWGFQTIGLSSDSKKPLE---------Q--EIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVS 266 (282)
Q Consensus 199 l~~~~~~~~~i~~~~~~~~~~~~---------~--~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip-~~~~~~SLNvs 266 (282)
++.++... .++.+|..|.. +. . ..-..+.+|++|.- .|+++++++.+|..+++- |+ +.=.
T Consensus 64 l~~i~~~~-~~I~LDe~Gk~-~sS~~fA~~i~~~~~~g~~~i~FiIGGa-~G~~~~~~~~a~~~lSls~mT-----~pH~ 135 (157)
T d1vh0a_ 64 LAKIKPQS-TVITLEIQGKM-LSSEGLAQELNQRMTQGQSDFVFVIGGS-NGLHKDVLQRSNYALSFSKMT-----FPHQ 135 (157)
T ss_dssp HHTSCTTS-EEEEEEEEEEC-CCHHHHHHHHHHHHHTTCCEEEEEECBT-TBCCHHHHHHCSEEECSCSSC-----CCHH
T ss_pred HHHCCCCC-EEEEEECCCCC-CCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHCCCEEECCCCC-----CHHH
T ss_conf 97338998-27987425456-7889999999999861578569997688-766878996339779773377-----5359
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999876
Q gi|254780603|r 267 NAAAVALYITQNH 279 (282)
Q Consensus 267 ~a~ai~l~~~~~~ 279 (282)
.|.-|++-+++|-
T Consensus 136 larv~l~EQlYRa 148 (157)
T d1vh0a_ 136 MMRVVLIEQVYRA 148 (157)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 15
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=54.33 E-value=5.6 Score=16.68 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=43.1
Q ss_pred CCHHHHCCCCCCC----C----CCCC-CC-CCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0000000123332----2----1122-36-89889997586789877999858939992789687437899999999999
Q gi|254780603|r 206 GFQTIGLSSDSKK----P----LEQE-IK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275 (282)
Q Consensus 206 ~~~i~~~~~~~~~----~----~~~~-~~-~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~ 275 (282)
+-.++.+|..|.. . +... +. ..+.+|++|.- .|+++++.+.+|..+++---- +.=..|.-|++-+
T Consensus 70 ~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~FiIGGa-~G~~~~~~~~a~~~~Sls~mT----~pH~l~r~~l~EQ 144 (157)
T d1to0a_ 70 DAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGS-LGLSDTVMKRADEKLSFSKMT----FPHQLMRLILVEQ 144 (157)
T ss_dssp TSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCS-SCCCHHHHHHCSEEEESCSSC----CCHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHCCCEEECCCCC----CHHHHHHHHHHHH
T ss_conf 98389861411455079999999998855886349997899-888988996269589534687----6589999999999
Q ss_pred HHHH
Q ss_conf 9876
Q gi|254780603|r 276 TQNH 279 (282)
Q Consensus 276 ~~~~ 279 (282)
++|-
T Consensus 145 iYRa 148 (157)
T d1to0a_ 145 IYRA 148 (157)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 16
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=41.11 E-value=9.1 Score=15.47 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=47.9
Q ss_pred CCCCHHHHCCCCCCCC-CC----CCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2100000001233322-11----223689889997586789877999858939992789687437899999999999987
Q gi|254780603|r 204 SWGFQTIGLSSDSKKP-LE----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278 (282)
Q Consensus 204 ~~~~~i~~~~~~~~~~-~~----~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~ 278 (282)
..|..+++++..|... .. +..-..+.++|+|.=.+|=.....+..|+.++|- . .+|-.+++++-+++++-.
T Consensus 148 p~~~k~I~LS~~G~~~~~~~l~~~l~~~~~v~~viG~f~~GD~~~~~~yide~ISIs---d-ypLSa~~v~sri~~~~E~ 223 (227)
T d2v3ka1 148 PTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLS---N-YPLSASVACSKFCHGAED 223 (227)
T ss_dssp CSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSSCSCTTTTTCSEEEBSC---S-SCCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEE---C-CCHHHHHHHHHHHHHHHH
T ss_conf 789859999998875689999997353899799995036888450000052699971---7-265199999999999999
Q ss_pred H
Q ss_conf 6
Q gi|254780603|r 279 H 279 (282)
Q Consensus 279 ~ 279 (282)
.
T Consensus 224 ~ 224 (227)
T d2v3ka1 224 A 224 (227)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 17
>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=33.45 E-value=2.9 Score=18.30 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=33.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 136863200000134443333211012---22322112222222100000001
Q gi|254780603|r 164 TTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMHSWGFQTIGLS 213 (282)
Q Consensus 164 l~~~~~~~~~~~~~ras~Ga~~~l~~~---~~~~~~~~l~~~~~~~~~i~~~~ 213 (282)
+.+.++.++.....|-++|-+-.++-. ..-++..+++.|.++||.++|.+
T Consensus 27 l~~~GF~~l~nP~ml~t~gr~~TL~~aa~~~gidl~~~~~~L~~aG~~v~g~d 79 (79)
T d2fi0a1 27 LVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGYEVIGLD 79 (79)
T ss_dssp HTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTCEEECCC
T ss_pred HHHCCCHHHCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCEEECCC
T ss_conf 99869252089799997866723999998759999999999998798641789
No 18
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.91 E-value=5.5 Score=16.72 Aligned_cols=15 Identities=0% Similarity=-0.037 Sum_probs=6.3
Q ss_pred CCCCEEEECHHHHHH
Q ss_conf 699699976899877
Q gi|254780603|r 89 HPFPVKTVPPQTIDK 103 (282)
Q Consensus 89 ~~~~I~~v~~~~l~~ 103 (282)
.+..+..++..++..
T Consensus 41 ~G~g~dvaS~~El~~ 55 (265)
T d1hkva2 41 EGLCLDVCTGGELAV 55 (265)
T ss_dssp HTCEEEECSHHHHHH
T ss_pred CCCCEEEECHHHHHH
T ss_conf 499759867515999
No 19
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=20.53 E-value=21 Score=13.36 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=44.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 06887234320688999999986420011001368632000001344433332110122232
Q gi|254780603|r 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 (282)
Q Consensus 133 ~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~ 194 (282)
..++|++...++..+-.+.+--..+|++++|+++-....--..++. +-....+|+.++.+
T Consensus 132 ~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TKlDe~~~~G~~l~--~~~~~~~Pi~~i~~ 191 (213)
T d1vmaa2 132 ETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLA--IARELGIPIKFIGV 191 (213)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEEECGGGCSCTTHHHH--HHHHHCCCEEEEEC
T ss_pred EEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHH--HHHHHCCCEEEEEC
T ss_conf 2578621234843355656540122786589842467876239999--99997979799968
Done!