RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (282 letters)



>3gyq_A RRNA (adenosine-2'-O-)-methyltransferase; rRNA
           methyltransferase, spout mtases, SAM, trefoil knot,
           antibiotic resistance; HET: SAM; 2.45A {Streptomyces
           cyaneus} (A:113-272)
          Length = 160

 Score =  105 bits (262), Expect = 9e-24
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D       ++VLD V    NIGAI+R+++A    GII       S +    + AS     
Sbjct: 1   DIASRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVF 60

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              + +S   +A+  +   G Q + L +D      E     D++AL+ G+E  G     +
Sbjct: 61  SLPVVLSGREEAIAFIRDSGMQLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFE 120

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282
           E +++   + M    ++LNVS +  +AL+  I +N  A 
Sbjct: 121 EASSASVSIPMMSQTESLNVSVSLGIALHERIDRNLAAN 159


>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot,
           decode, structural genomics; 2.40A {Burkholderia
           pseudomallei 305} (A:)
          Length = 160

 Score =  104 bits (259), Expect = 2e-23
 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 4/154 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S   +VL     P N G ++R          +      P + A + ++     E+     
Sbjct: 4   SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRV 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    +        +    ++                 + GAE +GL P   +     
Sbjct: 64  HRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPE 123

Query: 252 A--HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
               L M    ++LN+SN  AV ++    Q  F 
Sbjct: 124 QRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFE 157


>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken
           structural genomics/proteomics initiative, RSGI,
           structural genomics; HET: SAM; 1.50A {Thermus
           thermophilus} (A:21-176)
          Length = 156

 Score =  101 bits (252), Expect = 1e-22
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 5/151 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++L++V+ PHN+ AILR+  A                +    +++ G+ + +      
Sbjct: 3   LTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFN--ETSGGSHKWVYLRVHP 60

Query: 194 NLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +L +A + +   GF     +     +   +       A++ GAE  G+  +    A    
Sbjct: 61  DLHEAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAI 120

Query: 253 HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
            + M G++++LNVS AAAV L+    Q   A
Sbjct: 121 KIPMLGMVQSLNVSVAAAVILFEAQRQRLKA 151


>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase,
           structural genomics, structural genomics consortium,
           SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
           (A:)
          Length = 184

 Score =  100 bits (250), Expect = 2e-22
 Identities = 33/177 (18%), Positives = 70/177 (39%), Gaps = 6/177 (3%)

Query: 111 HQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-R 167
            +   L+   L       +    S+L++V   ++ P N+G + R+   F    ++    +
Sbjct: 2   SRVSDLDLELLFQDRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQ 61

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN 226
               +       ++     +  ++   L D LQ+  + G+  IG+        L Q    
Sbjct: 62  CISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFP 121

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           +K  L+LG E +G+     +       +   GII++LNV  + A+ ++    Q   +
Sbjct: 122 EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLS 178


>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380;
           APC63004, methylase family protein, haemophilus
           influenzae RD KW20; 2.01A {Haemophilus influenzae}
           (A:1-174)
          Length = 174

 Score =  100 bits (249), Expect = 3e-22
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 12/160 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL   +   NIG+  R+        +      S  E +     ++GA   +   R
Sbjct: 6   ENIRIVLIETSHSGNIGSAARAXKTXGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNAR 63

Query: 192 ISNLTDALQKMHSWGFQTIGL--------SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + +  D      S    T               +   +      KIA++ G E  GL  +
Sbjct: 64  VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 123

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
                    ++       +LN++ A  +  Y         
Sbjct: 124 ELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELRXAFLVQ 163


>1mxi_A YIBK, hypothetical tRNA/RRNA methyltransferase HI0766;
           S-adenosylhomocysteine, SPOU family, structure 2
           function project; HET: SAH; 1.70A {Haemophilus
           influenzae} (A:)
          Length = 160

 Score = 99.5 bits (247), Expect = 4e-22
 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I+R          +        +   L +S     E     R  
Sbjct: 2   LDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHK 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252
                L+         +  ++       Q        L+ G E +G+             
Sbjct: 62  TFEAFLESEKPKRLFAL--TTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQK 119

Query: 253 -HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             + M    +++N+SN+ AV +Y    Q  + 
Sbjct: 120 IRIPMTANSRSMNLSNSVAVTVYEAWRQLGYK 151


>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics,
           knot, structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 1.85A {Porphyromonas gingivalis
           W83} (A:99-257)
          Length = 159

 Score = 98.4 bits (244), Expect = 8e-22
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 7/150 (4%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L ++LD V DP N+G ILR+A  F    +      +   S  + +++ GAL  +    
Sbjct: 4   EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASXGALARVQPTP 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + N  D L      G    G   D +           +   L+LG+EG+G+ P+     T
Sbjct: 64  LKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEIT 123

Query: 250 S-----MAHLHMPGIIKALNVSNAAAVALY 274
                  + L + G  ++LNV+ A A+   
Sbjct: 124 DRLTIPASGLSVKGHTESLNVAIATAILCS 153


>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH;
           2'O-methyltransferase, knot, montreal- kingston
           bacterial structural genomics initiative, BSGI; 2.5A
           {Escherichia coli} (A:90-253)
          Length = 164

 Score = 97.2 bits (241), Expect = 2e-21
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 3/154 (1%)

Query: 124 PTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             L  +    +   L++LD V DPHN+GA LRSA A     +I  K  S   +A   K A
Sbjct: 4   NDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVA 63

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA E +P IR++NL    + +       +G + ++   L Q     ++AL+ GAEG+G 
Sbjct: 64  CGAAESVPLIRVTNLARTXRXLQEENIWIVGTAGEADHTLYQSKXTGRLALVXGAEGEGX 123

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           R  T+E    +  +   G + +LNVS A  + L+
Sbjct: 124 RRLTREHCDELISIPXAGSVSSLNVSVATGICLF 157


>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet;
           2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
           (A:119-287)
          Length = 169

 Score = 96.9 bits (240), Expect = 3e-21
 Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 7/160 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ D    P NIG+I+RSA A    G+I     +        +S++G+L  +P 
Sbjct: 5   REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPA 64

Query: 190 IRISNLTDALQKMHSWGFQTI-----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +R+ +  +    + +           G        +          L++G E  GL    
Sbjct: 65  VRVPSPGEVXDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAW 124

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282
           +        +   G   +LN +NAA   LY  + Q    +
Sbjct: 125 RTLCDYTVSIPXAGSASSLNAANAATAILYEAVRQRISGR 164


>3ic6_A Putative methylase family protein; structural genomics,
           PSI-2, protein structure initiative, midwest center for
           structural genomics; 2.59A {Neisseria gonorrhoeae fa
           1090} (A:1-201)
          Length = 201

 Score = 96.9 bits (240), Expect = 3e-21
 Identities = 30/192 (15%), Positives = 55/192 (28%), Gaps = 33/192 (17%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII------------------ 163
           L P L       + ++L   + P NIG+  R+        +                   
Sbjct: 7   LKPALPD-YLGNIRIILTRTSHPANIGSAARAXKTXGLHRLTIVTPNLXATPXTENPPVF 65

Query: 164 -TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG----------- 211
                 S +        ASGA + +    I    D      +                  
Sbjct: 66  NPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPLQT 125

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                 + L+   + +K+AL+ G E  GL  +       +  ++      +LN++ A  V
Sbjct: 126 PRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLXTINGNPDYFSLNLAQAVQV 185

Query: 272 ALY--ITQNHFA 281
             Y   +Q    
Sbjct: 186 VCYEIFSQTDSP 197


>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich,
           structural genomics, PSI-2, protein structure
           initiative; 2.30A {Bordetella pertussis} (A:)
          Length = 173

 Score = 95.7 bits (237), Expect = 5e-21
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 15/160 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGALEHI 187
             S++  +    + P N+G+  R+        ++    +    +        ASGAL+ +
Sbjct: 7   AFSRVRFIXTQPSHPGNVGSAARAIKTXGFGELVLVAPRFPDXTAQPEAVALASGALDVL 66

Query: 188 PYIRIS-NLTDALQKMHSWGFQTI------------GLSSDSKKPLEQEIKNDKIALILG 234
               +   L +AL  +      T               ++   +    + +   +A++LG
Sbjct: 67  ERAAVHDTLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLG 126

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E  GL     E    + H+       +LNV+ A  +A +
Sbjct: 127 TERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAW 166


>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA
           modifying enzyme, topological knot; 1.85A {Aquifex
           aeolicus} (A:24-180)
          Length = 157

 Score = 92.2 bits (228), Expect = 7e-20
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 4/151 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++  D+V + HN  AI+R+  A     +                +  G+ + +   ++ 
Sbjct: 3   LIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQ-GSHKWVFIEKVD 61

Query: 194 NLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           N    L +  + GFQ +            +        L++G E +G+ P+  E A    
Sbjct: 62  NPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKI 121

Query: 253 HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
            + M G+ ++LNVS A  + LY    Q    
Sbjct: 122 VIPMYGMAQSLNVSVATGIILYEAQRQREEK 152


>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout
           mtase, adoMet binding, transferase; HET: SAM; 2.00A
           {Thermotoga maritima} (X:)
          Length = 192

 Score = 90.7 bits (224), Expect = 2e-19
 Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-----------TTKRYSPSESAVLAK 178
              +   ++       ++  I R+A  ++  G              +K          ++
Sbjct: 14  IKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSR 73

Query: 179 SASGALEHIPYIRI-SNLTDALQKMHSWGFQTIGL----------SSDSKKPLEQEIKND 227
                 E +  +++ S L D L+ + S   +   +              ++     I+ +
Sbjct: 74  YNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETE 133

Query: 228 KIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282
           K  LIL   G GL  +  E +  +   +        L+V  AAA+ +   I +N+  +
Sbjct: 134 KPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENYARR 191


>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot,
           rossmann fold, EL30-like fold, riken structural
           genomics/proteomics initiative; 2.40A {Thermus
           thermophilus} (A:109-274)
          Length = 166

 Score = 89.1 bits (220), Expect = 6e-19
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 4/155 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L++V   +  P N+GA+LRSA A   + ++           V+  +++G +  +  
Sbjct: 5   SPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIR-NSTGVVFSLRT 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +  S   + L  +       +  +  ++    +      +A+ +G E +GLR    E A 
Sbjct: 64  LAASES-EVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQ 122

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282
           +   + M G   +LNVS +AA+ LY  + Q     
Sbjct: 123 TQVRIPMQGQADSLNVSVSAALLLYEALRQRLLRD 157


>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH;
           2'O-methyltransferase, knot, montreal- kingston
           bacterial structural genomics initiative, BSGI; 2.5A
           {Escherichia coli} (A:1-89)
          Length = 89

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANL--PHPFPV 93
           +          +  +YG+H V A L     +  ++   K     RL    +        +
Sbjct: 1   SSGLVPRGSHXSEXIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVI 60

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPL 121
           +    Q +D+     AVHQG+     P 
Sbjct: 61  QLANRQYLDEKSD-GAVHQGIIARVKPG 87


>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma
           brucei} (A:43-194)
          Length = 152

 Score = 28.0 bits (62), Expect = 1.3
 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--------WDANLPHPF 91
            R      N   +G H +        R +  LL  K  L+R+         + A   HP 
Sbjct: 21  KRSGIXDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPL 80

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             K+    T+            +  E  P  SP L 
Sbjct: 81  VPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPELH 116


>2r05_A Programmed cell death 6-interacting protein; peptide,
           coiled-coil, apoptosis, cytoplasm, HOST-virus
           interaction, polymorphism, protein transport, transport,
           AIDS, capsid protein; 2.55A {Homo sapiens} PDB: 2r02_A
           2r03_A 2oev_A 2oex_A 2ojq_A (A:339-406,A:540-635)
          Length = 164

 Score = 28.2 bits (63), Expect = 1.4
 Identities = 9/47 (19%), Positives = 19/47 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           N + A ++      +R  T      +A L++P  I+   +  +  V 
Sbjct: 32  NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDKTMQGSEVVN 78


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 27.2 bits (60), Expect = 2.5
 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 39/126 (30%)

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+TT R   S      K AS  L  + Y R   L     ++  W              +
Sbjct: 5   GILTTAREHHSSV----KYASPNLN-MKY-RKRQLVTREAQIKDW--------------V 44

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV----ALYIT 276
           E E++       L  E + +   +++    +         +   + N A      A    
Sbjct: 45  ENELE------ALKLEAEEI--PSEDQNEFLLE-------RTREIHNEAESQLRAAQQQW 89

Query: 277 QNHFAK 282
            N F K
Sbjct: 90  GNDFYK 95


>1tjy_A Sugar transport protein; protein-ligand complex, signaling
           protein; HET: PAV; 1.30A {Salmonella typhimurium LT2}
           (A:1-107,A:244-301)
          Length = 165

 Score = 26.1 bits (57), Expect = 5.6
 Identities = 6/78 (7%), Positives = 18/78 (23%), Gaps = 3/78 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               +               ++ + V    D II +          L ++       +  
Sbjct: 32  LGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ---RGVKI 88

Query: 190 IRISNLTDALQKMHSWGF 207
           +   + T    + +    
Sbjct: 89  LTWDSDTKPECRSYYINQ 106


>1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD
           FMN NAP EPE; 1.80A {Rattus norvegicus}
           (A:183-211,A:286-321,A:382-394)
          Length = 78

 Score = 25.6 bits (56), Expect = 7.3
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 4/25 (16%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIV 105
           LD ++N  HPFP     P T    +
Sbjct: 39  LDEESNKKHPFPC----PTTYRTAL 59


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,950,263
Number of extensions: 80961
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 22
Length of query: 282
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 195
Effective length of database: 2,015,014
Effective search space: 392927730
Effective search space used: 392927730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)