RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] (282 letters) >3gyq_A RRNA (adenosine-2'-O-)-methyltransferase; rRNA methyltransferase, spout mtases, SAM, trefoil knot, antibiotic resistance; HET: SAM; 2.45A {Streptomyces cyaneus} (A:113-272) Length = 160 Score = 105 bits (262), Expect = 9e-24 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186 D ++VLD V NIGAI+R+++A GII S + + AS Sbjct: 1 DIASRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVF 60 Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245 + +S +A+ + G Q + L +D E D++AL+ G+E G + Sbjct: 61 SLPVVLSGREEAIAFIRDSGMQLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFE 120 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282 E +++ + M ++LNVS + +AL+ I +N A Sbjct: 121 EASSASVSIPMMSQTESLNVSVSLGIALHERIDRNLAAN 159 >3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} (A:) Length = 160 Score = 104 bits (259), Expect = 2e-23 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 4/154 (2%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 S +VL P N G ++R + P + A + ++ E+ Sbjct: 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRV 63 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251 + + + ++ + GAE +GL P + Sbjct: 64 HRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPE 123 Query: 252 A--HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 L M ++LN+SN AV ++ Q F Sbjct: 124 QRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFE 157 >1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} (A:21-176) Length = 156 Score = 101 bits (252), Expect = 1e-22 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 5/151 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L ++L++V+ PHN+ AILR+ A + +++ G+ + + Sbjct: 3 LTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFN--ETSGGSHKWVYLRVHP 60 Query: 194 NLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 +L +A + + GF + + + A++ GAE G+ + A Sbjct: 61 DLHEAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAI 120 Query: 253 HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 + M G++++LNVS AAAV L+ Q A Sbjct: 121 KIPMLGMVQSLNVSVAAAVILFEAQRQRLKA 151 >2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} (A:) Length = 184 Score = 100 bits (250), Expect = 2e-22 Identities = 33/177 (18%), Positives = 70/177 (39%), Gaps = 6/177 (3%) Query: 111 HQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-R 167 + L+ L + S+L++V ++ P N+G + R+ F ++ + Sbjct: 2 SRVSDLDLELLFQDRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQ 61 Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN 226 + ++ + ++ L D LQ+ + G+ IG+ L Q Sbjct: 62 CISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFP 121 Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 +K L+LG E +G+ + + GII++LNV + A+ ++ Q + Sbjct: 122 EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLS 178 >3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae} (A:1-174) Length = 174 Score = 100 bits (249), Expect = 3e-22 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 12/160 (7%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL + NIG+ R+ + S E + ++GA + R Sbjct: 6 ENIRIVLIETSHSGNIGSAARAXKTXGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNAR 63 Query: 192 ISNLTDALQKMHSWGFQTIGL--------SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243 + + D S T + + KIA++ G E GL + Sbjct: 64 VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 123 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 ++ +LN++ A + Y Sbjct: 124 ELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELRXAFLVQ 163 >1mxi_A YIBK, hypothetical tRNA/RRNA methyltransferase HI0766; S-adenosylhomocysteine, SPOU family, structure 2 function project; HET: SAH; 1.70A {Haemophilus influenzae} (A:) Length = 160 Score = 99.5 bits (247), Expect = 4e-22 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 6/152 (3%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L +VL P N G I+R + + L +S E R Sbjct: 2 LDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHK 61 Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252 L+ + ++ Q L+ G E +G+ Sbjct: 62 TFEAFLESEKPKRLFAL--TTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQK 119 Query: 253 -HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 + M +++N+SN+ AV +Y Q + Sbjct: 120 IRIPMTANSRSMNLSNSVAVTVYEAWRQLGYK 151 >2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83} (A:99-257) Length = 159 Score = 98.4 bits (244), Expect = 8e-22 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 7/150 (4%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 L ++LD V DP N+G ILR+A F + + S + +++ GAL + Sbjct: 4 EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASXGALARVQPTP 63 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETAT 249 + N D L G G D + + L+LG+EG+G+ P+ T Sbjct: 64 LKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEIT 123 Query: 250 S-----MAHLHMPGIIKALNVSNAAAVALY 274 + L + G ++LNV+ A A+ Sbjct: 124 DRLTIPASGLSVKGHTESLNVAIATAILCS 153 >1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} (A:90-253) Length = 164 Score = 97.2 bits (241), Expect = 2e-21 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 3/154 (1%) Query: 124 PTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180 L + + L++LD V DPHN+GA LRSA A +I K S +A K A Sbjct: 4 NDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVA 63 Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240 GA E +P IR++NL + + +G + ++ L Q ++AL+ GAEG+G Sbjct: 64 CGAAESVPLIRVTNLARTXRXLQEENIWIVGTAGEADHTLYQSKXTGRLALVXGAEGEGX 123 Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 R T+E + + G + +LNVS A + L+ Sbjct: 124 RRLTREHCDELISIPXAGSVSSLNVSVATGICLF 157 >1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* (A:119-287) Length = 169 Score = 96.9 bits (240), Expect = 3e-21 Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 7/160 (4%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++ D P NIG+I+RSA A G+I + +S++G+L +P Sbjct: 5 REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPA 64 Query: 190 IRISNLTDALQKMHSWGFQTI-----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 +R+ + + + + G + L++G E GL Sbjct: 65 VRVPSPGEVXDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAW 124 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282 + + G +LN +NAA LY + Q + Sbjct: 125 RTLCDYTVSIPXAGSASSLNAANAATAILYEAVRQRISGR 164 >3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090} (A:1-201) Length = 201 Score = 96.9 bits (240), Expect = 3e-21 Identities = 30/192 (15%), Positives = 55/192 (28%), Gaps = 33/192 (17%) Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII------------------ 163 L P L + ++L + P NIG+ R+ + Sbjct: 7 LKPALPD-YLGNIRIILTRTSHPANIGSAARAXKTXGLHRLTIVTPNLXATPXTENPPVF 65 Query: 164 -TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG----------- 211 S + ASGA + + I D + Sbjct: 66 NPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPLQT 125 Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271 + L+ + +K+AL+ G E GL + + ++ +LN++ A V Sbjct: 126 PRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLXTINGNPDYFSLNLAQAVQV 185 Query: 272 ALY--ITQNHFA 281 Y +Q Sbjct: 186 VCYEIFSQTDSP 197 >3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.30A {Bordetella pertussis} (A:) Length = 173 Score = 95.7 bits (237), Expect = 5e-21 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 15/160 (9%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGALEHI 187 S++ + + P N+G+ R+ ++ + + ASGAL+ + Sbjct: 7 AFSRVRFIXTQPSHPGNVGSAARAIKTXGFGELVLVAPRFPDXTAQPEAVALASGALDVL 66 Query: 188 PYIRIS-NLTDALQKMHSWGFQTI------------GLSSDSKKPLEQEIKNDKIALILG 234 + L +AL + T ++ + + + +A++LG Sbjct: 67 ERAAVHDTLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLG 126 Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 E GL E + H+ +LNV+ A +A + Sbjct: 127 TERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAW 166 >1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} (A:24-180) Length = 157 Score = 92.2 bits (228), Expect = 7e-20 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 4/151 (2%) Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193 L++ D+V + HN AI+R+ A + + G+ + + ++ Sbjct: 3 LIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQ-GSHKWVFIEKVD 61 Query: 194 NLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252 N L + + GFQ + + L++G E +G+ P+ E A Sbjct: 62 NPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKI 121 Query: 253 HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 + M G+ ++LNVS A + LY Q Sbjct: 122 VIPMYGMAQSLNVSVATGIILYEAQRQREEK 152 >3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} (X:) Length = 192 Score = 90.7 bits (224), Expect = 2e-19 Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 25/178 (14%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-----------TTKRYSPSESAVLAK 178 + ++ ++ I R+A ++ G +K ++ Sbjct: 14 IKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSR 73 Query: 179 SASGALEHIPYIRI-SNLTDALQKMHSWGFQTIGL----------SSDSKKPLEQEIKND 227 E + +++ S L D L+ + S + + ++ I+ + Sbjct: 74 YNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETE 133 Query: 228 KIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282 K LIL G GL + E + + + L+V AAA+ + I +N+ + Sbjct: 134 KPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENYARR 191 >1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} (A:109-274) Length = 166 Score = 89.1 bits (220), Expect = 6e-19 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 4/155 (2%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 L++V + P N+GA+LRSA A + ++ V+ +++G + + Sbjct: 5 SPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIR-NSTGVVFSLRT 63 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + S + L + + + ++ + +A+ +G E +GLR E A Sbjct: 64 LAASES-EVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQ 122 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282 + + M G +LNVS +AA+ LY + Q Sbjct: 123 TQVRIPMQGQADSLNVSVSAALLLYEALRQRLLRD 157 >1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} (A:1-89) Length = 89 Score = 65.2 bits (159), Expect = 1e-11 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 4/88 (4%) Query: 37 NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANL--PHPFPV 93 + + +YG+H V A L + ++ K RL + + Sbjct: 1 SSGLVPRGSHXSEXIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVI 60 Query: 94 KTVPPQTIDKIVGKEAVHQGLALETAPL 121 + Q +D+ AVHQG+ P Sbjct: 61 QLANRQYLDEKSD-GAVHQGIIARVKPG 87 >1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} (A:43-194) Length = 152 Score = 28.0 bits (62), Expect = 1.3 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 8/96 (8%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--------WDANLPHPF 91 R N +G H + R + LL K L+R+ + A HP Sbjct: 21 KRSGIXDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPL 80 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 K+ T+ + E P SP L Sbjct: 81 VPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPELH 116 >2r05_A Programmed cell death 6-interacting protein; peptide, coiled-coil, apoptosis, cytoplasm, HOST-virus interaction, polymorphism, protein transport, transport, AIDS, capsid protein; 2.55A {Homo sapiens} PDB: 2r02_A 2r03_A 2oev_A 2oex_A 2ojq_A (A:339-406,A:540-635) Length = 164 Score = 28.2 bits (63), Expect = 1.4 Identities = 9/47 (19%), Positives = 19/47 (40%) Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 N + A ++ +R T +A L++P I+ + + V Sbjct: 32 NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDKTMQGSEVVN 78 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 27.2 bits (60), Expect = 2.5 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 39/126 (30%) Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 GI+TT R S K AS L + Y R L ++ W + Sbjct: 5 GILTTAREHHSSV----KYASPNLN-MKY-RKRQLVTREAQIKDW--------------V 44 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV----ALYIT 276 E E++ L E + + +++ + + + N A A Sbjct: 45 ENELE------ALKLEAEEI--PSEDQNEFLLE-------RTREIHNEAESQLRAAQQQW 89 Query: 277 QNHFAK 282 N F K Sbjct: 90 GNDFYK 95 >1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:1-107,A:244-301) Length = 165 Score = 26.1 bits (57), Expect = 5.6 Identities = 6/78 (7%), Positives = 18/78 (23%), Gaps = 3/78 (3%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 + ++ + V D II + L ++ + Sbjct: 32 LGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ---RGVKI 88 Query: 190 IRISNLTDALQKMHSWGF 207 + + T + + Sbjct: 89 LTWDSDTKPECRSYYINQ 106 >1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD FMN NAP EPE; 1.80A {Rattus norvegicus} (A:183-211,A:286-321,A:382-394) Length = 78 Score = 25.6 bits (56), Expect = 7.3 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 4/25 (16%) Query: 81 LDWDANLPHPFPVKTVPPQTIDKIV 105 LD ++N HPFP P T + Sbjct: 39 LDEESNKKHPFPC----PTTYRTAL 59 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.130 0.369 Gapped Lambda K H 0.267 0.0477 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,950,263 Number of extensions: 80961 Number of successful extensions: 330 Number of sequences better than 10.0: 1 Number of HSP's gapped: 316 Number of HSP's successfully gapped: 22 Length of query: 282 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 195 Effective length of database: 2,015,014 Effective search space: 392927730 Effective search space used: 392927730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 54 (25.2 bits)