RPSBLAST alignment of GI: 254780603 and protein with PDBid: 1ipa

>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Length = 274

 Score =  111 bits (279), Expect = 2e-25
 Identities = 53/270 (19%), Positives = 103/270 (38%), Gaps = 22/270 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIF 69
           +I S  +    +L R            +K R +   +  FL  G   +  AL     ++ 
Sbjct: 2   RITSTANPRIKELARLLE---------RKHRDS---QRRFLIEGAREIERALQA-GIELE 48

Query: 70  QLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSP 124
           Q L  +  L   +              +  V    + K+  ++    G +AL   P  + 
Sbjct: 49  QALVWEGGLNPEEQQVYAALGRVGRLALLEVSEAVLKKLSVRD-NPAGLIALARMPERTL 107

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++V   +  P N+GA+LRSA A   + ++           V  ++++G +
Sbjct: 108 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQV-IRNSTGVV 166

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +  +  S  ++ L  +       +  +  ++    +      +A+ +G E +GLR   
Sbjct: 167 FSLRTLAASE-SEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAW 225

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E A +   + M G   +LNVS +AA+ LY
Sbjct: 226 LEAAQTQVRIPMQGQADSLNVSVSAALLLY 255