RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] (282 letters) >1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Length = 253 Score = 136 bits (344), Expect = 4e-33 Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 10/234 (4%) Query: 50 FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106 +YG+H V A L + ++ K + A ++ Q +D+ Sbjct: 14 MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSD 73 Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160 VHQG+ P + + + L++LD V DPHN+GA LRSA A Sbjct: 74 GA-VHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 132 Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220 +I K S +A K A GA E +P IR++NL ++ + +G + ++ L Sbjct: 133 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 192 Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 Q ++AL++GAEG+G+R T+E + + M G + +LNVS A + L+ Sbjct: 193 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 246 >3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Length = 277 Score = 128 bits (324), Expect = 1e-30 Identities = 39/254 (15%), Positives = 89/254 (35%), Gaps = 8/254 (3%) Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLD 82 + +++ + SR L + + + ++ + Sbjct: 13 ASDPA-VQRIIDVTKHSR---ASIKTTLIEDTEPLMECIRA-GVQFIEVYGSSGTPLDPA 67 Query: 83 WDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141 PV+ + ++++ E + + P + D ++VLD V Sbjct: 68 LLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGV 127 Query: 142 NDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200 NIGAI+R+++A GI+ + L +++ G + +P + Sbjct: 128 KIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSF 187 Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260 + + + + + D++AL+ G+E G QE + + M Sbjct: 188 LRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSST 247 Query: 261 KALNVSNAAAVALY 274 ++LNVS + +AL+ Sbjct: 248 ESLNVSVSVGIALH 261 >1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Length = 274 Score = 111 bits (279), Expect = 2e-25 Identities = 53/270 (19%), Positives = 103/270 (38%), Gaps = 22/270 (8%) Query: 11 KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIF 69 +I S + +L R +K R + + FL G + AL ++ Sbjct: 2 RITSTANPRIKELARLLE---------RKHRDS---QRRFLIEGAREIERALQA-GIELE 48 Query: 70 QLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSP 124 Q L + L + + V + K+ ++ G +AL P + Sbjct: 49 QALVWEGGLNPEEQQVYAALGRVGRLALLEVSEAVLKKLSVRD-NPAGLIALARMPERTL 107 Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184 L++V + P N+GA+LRSA A + ++ V ++++G + Sbjct: 108 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQV-IRNSTGVV 166 Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244 + + S ++ L + + + ++ + +A+ +G E +GLR Sbjct: 167 FSLRTLAASE-SEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAW 225 Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274 E A + + M G +LNVS +AA+ LY Sbjct: 226 LEAAQTQVRIPMQGQADSLNVSVSAALLLY 255 >3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A* Length = 165 Score = 105 bits (262), Expect = 2e-23 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 7/158 (4%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 N+ L +VL P N G I+R C + + L ++ E Sbjct: 2 NAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIK 61 Query: 191 RIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 D+ + + + L++ L+ G E +GL + Sbjct: 62 HHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDA 121 Query: 248 ATSMAHLHMP--GIIKALNVSNAAAVALY--ITQNHFA 281 + + +P +++N+SNA +V +Y Q + Sbjct: 122 LPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYP 159 >1mxi_A YIBK, hypothetical tRNA/RRNA methyltransferase HI0766; S-adenosylhomocysteine, SPOU family, structure 2 function project; HET: SAH; 1.70A {Haemophilus influenzae} SCOP: c.116.1.1 PDB: 1j85_A* Length = 160 Score = 96.0 bits (238), Expect = 8e-21 Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 6/149 (4%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 VL P N G I+R + + L +S E R Sbjct: 5 VLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFE 64 Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256 L+ + ++ Q L+ G E +G+ + + Sbjct: 65 AFLESEKPKRLFAL--TTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRI 122 Query: 257 P--GIIKALNVSNAAAVALY--ITQNHFA 281 P +++N+SN+ AV +Y Q + Sbjct: 123 PMTANSRSMNLSNSVAVTVYEAWRQLGYK 151 >3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.30A {Bordetella pertussis} Length = 173 Score = 94.9 bits (235), Expect = 2e-20 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPY 189 S++ ++ + P N+G+ R+ ++ + ASGAL+ + Sbjct: 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLER 68 Query: 190 IRISNLTDALQK-------------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236 + + + I ++ + + + +A++LG E Sbjct: 69 AAVHDTLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTE 128 Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274 GL E + H+ +LNV+ A +A + Sbjct: 129 RAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAW 166 >3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides} Length = 249 Score = 92.4 bits (229), Expect = 1e-19 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 11/149 (7%) Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196 +L NIGA R+ + F + + ASGA + + + Sbjct: 8 ILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTV 67 Query: 197 DALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRPKTQ 245 + + F T + KP + ++ ++ G E GL + Sbjct: 68 AEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDV 127 Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274 A ++ + + +LN++ + Y Sbjct: 128 ALANAIVTVPVNPEFFSLNLAQCVLLLAY 156 >1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Length = 287 Score = 90.8 bits (224), Expect = 3e-19 Identities = 50/257 (19%), Positives = 95/257 (36%), Gaps = 9/257 (3%) Query: 25 RNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDW 83 RN R +++ Q+ ++ FL GV +S A+ + L + L++ Sbjct: 18 RNAR-FQQWQALLGNRNKRTR-AGEFLVMGVRPISLAVEHGWPVRTLLYDGQRELSKWAR 75 Query: 84 DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVN 142 + + P + ++ K + + P VR L ++ D Sbjct: 76 ELLRTVRTEQIAMAPDLLMELGEKNEAPPEVVAVVEMPADDLDRIPVREDFLGVLFDRPT 135 Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202 P NIG+I+RSA A G+I + +S++G+L +P +R+ + + + + Sbjct: 136 SPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWV 195 Query: 203 HSW-----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 + +G + L++G E GL + + M Sbjct: 196 EARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMA 255 Query: 258 GIIKALNVSNAAAVALY 274 G +LN +NAA LY Sbjct: 256 GSASSLNAANAATAILY 272 >3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} Length = 160 Score = 90.4 bits (223), Expect = 4e-19 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 4/155 (2%) Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190 S +VL P N G ++R + P + A + ++ E+ Sbjct: 3 GSMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMR 62 Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT--QETA 248 + + + ++ + GAE +GL P + Sbjct: 63 VHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAP 122 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281 L M ++LN+SN AV ++ Q F Sbjct: 123 EQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFE 157 >1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Length = 211 Score = 90.6 bits (224), Expect = 4e-19 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 2/146 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L++ D+V + HN AI+R+ A + ++ + G+ + + Sbjct: 22 RQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHA-EGKKAKINEGITQGSHKWVFI 80 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248 ++ N L + + GFQ + + + L++G E +G+ P+ E A Sbjct: 81 EKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIA 140 Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274 + M G+ ++LNVS A + LY Sbjct: 141 DKKIVIPMYGMAQSLNVSVATGIILY 166 >3gyq_A RRNA (adenosine-2'-O-)-methyltransferase; rRNA methyltransferase, spout mtases, SAM, trefoil knot, antibiotic resistance; HET: SAM; 2.45A {Streptomyces cyaneus} Length = 272 Score = 88.9 bits (219), Expect = 1e-18 Identities = 47/248 (18%), Positives = 102/248 (41%), Gaps = 7/248 (2%) Query: 30 YKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88 +++ + SR L V + ++ + ++ + ++ + Sbjct: 18 VQRIIDVTKPSR---SNIKTTLIEDVEPLMHSIAA-GVEFIEVYGSDSSPFPSELLDLCG 73 Query: 89 HPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147 PV+ + ++++ E + + P + D ++VLD V NI Sbjct: 74 RQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIVGNI 133 Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 GAI+R+++A GII S + + AS + +S +A+ + G Sbjct: 134 GAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIAFIRDSGM 193 Query: 208 QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266 Q + L +D +++ N D++AL+ G+E G +E +++ + M ++LNVS Sbjct: 194 QLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVS 253 Query: 267 NAAAVALY 274 + +AL+ Sbjct: 254 VSLGIALH 261 >3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090} Length = 223 Score = 83.5 bits (205), Expect = 5e-17 Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 31/185 (16%) Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---------------- 163 L P L + + ++L + P NIG+ R+ + Sbjct: 5 TALKPALPDYLGN-IRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 63 Query: 164 ---TTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQT---------- 209 S + ASGA + + I L +AL T Sbjct: 64 VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 123 Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269 + L+ + +K+AL+ G E GL + + ++ +LN++ A Sbjct: 124 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 183 Query: 270 AVALY 274 V Y Sbjct: 184 QVVCY 188 >1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Length = 194 Score = 79.6 bits (195), Expect = 8e-16 Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 1/145 (0%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189 R L ++L++V+ PHN+ AILR+ A + S Sbjct: 19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAV-NPTGGVPTFNETSGGSHKWVYLR 77 Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249 + + + + A++ GAE G+ + A Sbjct: 78 VHPDLHEAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALAD 137 Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274 + M G++++LNVS AAAV L+ Sbjct: 138 GAIKIPMLGMVQSLNVSVAAAVILF 162 >2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Length = 184 Score = 79.6 bits (195), Expect = 8e-16 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 2/147 (1%) Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHI 187 S+L++V ++ P N+G + R+ F ++ + + S + L+ SA L + Sbjct: 23 SISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQWLPLV 82 Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247 + QK + L Q +K L+LG E +G+ + Sbjct: 83 EVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQ 142 Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274 + GII++LNV + A+ ++ Sbjct: 143 LDVCVEIPQQGIIRSLNVHVSGALLIW 169 >2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83} Length = 257 Score = 77.0 bits (188), Expect = 4e-15 Identities = 52/252 (20%), Positives = 90/252 (35%), Gaps = 19/252 (7%) Query: 31 KKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89 K ++S ++ E F G V L + L+ T L + + Sbjct: 11 KFLRSLRERKYRLR--EQAFAVEGPKLVGEMLP--FYRCRMLVGTAAMLRAVSTPHDAEV 66 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149 V+ +I + +A+ P L ++LD V DP N+G Sbjct: 67 ---VELPESFDFKRISTQTTPQPLMAVFD----LPAEPEPVVEGLTLLLDGVQDPGNVGT 119 Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 ILR+A F + + S + +++ GAL + + N D L G Sbjct: 120 ILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPV 179 Query: 210 IGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKTQETATS-----MAHLHMPGIIKA 262 G D + + L+LG+EG+G+ P+ T + L + G ++ Sbjct: 180 YGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTES 239 Query: 263 LNVSNAAAVALY 274 LNV+ A A+ Sbjct: 240 LNVAIATAILCS 251 >3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae} Length = 244 Score = 72.6 bits (177), Expect = 1e-13 Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 10/157 (6%) Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191 + +VL + NIG+ R+ + S E + ++GA + R Sbjct: 6 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSY--ALSAGAENIVKNAR 63 Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPL--------EQEIKNDKIALILGAEGKGLRPK 243 + + D S T + L + KIA++ G E GL + Sbjct: 64 VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 123 Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 ++ +LN++ A + Y + F Sbjct: 124 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 160 >3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Length = 192 Score = 63.6 bits (154), Expect = 5e-11 Identities = 21/171 (12%), Positives = 53/171 (30%), Gaps = 28/171 (16%) Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-------------TTKRYSPSESAV 175 ++ ++ V + ++ I R+A ++ G ++ Sbjct: 14 IKGKDGSIISTAVTNL-DVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFG- 71 Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-----------EQEI 224 ++ E + +++ + + + + L + I Sbjct: 72 -SRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIII 130 Query: 225 KNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGIIKALNVSNAAAVALY 274 + +K LIL G GL + E + + + L+V AAA+ + Sbjct: 131 ETEKPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIID 181 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 46.1 bits (109), Expect = 8e-06 Identities = 57/370 (15%), Positives = 102/370 (27%), Gaps = 182/370 (49%) Query: 18 SHYAKLRRNHRDYKKM--QSFNQKS--RH-TSQPENLFLYGV-------------H-TVS 58 ++L R D +K+ Q N + ++ P+ +L + H V+ Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252 Query: 59 A-ALN-NPS--RKIF-------QLLATKNALARLD-WDA---NL--------------PH 89 A L P R Q L T A+A D W++ ++ Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312 Query: 90 PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDH------ 140 +P ++PP + ++++ E P SP L ++ N Q+ ++ Sbjct: 313 AYPNTSLPPSIL-----EDSLENN---EGVP--SPML-SISNLTQEQVQDYVNKTNSHLP 361 Query: 141 ---------VNDPHNI---G---------AILR----------SAVAFSCDGIITTKR-- 167 VN N+ G LR S + FS +R Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-------ERKL 414 Query: 168 ---------YSPSESAVLAKSASGALEH--------------IP-Y-------IR--ISN 194 SP S +L ++ + IP Y +R + Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474 Query: 195 LTDALQKM------HSW-----------------GFQTIGLSSDSKKPLEQEIKNDKIAL 231 +++ + W G +G L K Sbjct: 475 ISERIVDCIIRLPVK-WETTTQFKATHILDFGPGGASGLG-------VLTHRNK------ 520 Query: 232 ILGAEGKGLR 241 +G G+R Sbjct: 521 ----DGTGVR 526 Score = 40.7 bits (95), Expect = 4e-04 Identities = 55/320 (17%), Positives = 95/320 (29%), Gaps = 140/320 (43%) Query: 47 ENLFLYG--VHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQ 99 EN +L G +H ++A L + L+ TK + AR PF Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTT--LVKTKELIKNYITAR----IMAKRPFD--KKSNS 143 Query: 100 TIDKIVGKEAVH-------QG--------LALET----APLLSPTLDAVRNSQLLMVLDH 140 + + VG+ QG L + L+ + ++ L L Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELR-DLYQTYHVLVGDLIKFS--AETLSEL-- 198 Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYS---------------PSESAVLAKSA--S-- 181 +R+ + K ++ P + +L S S Sbjct: 199 ----------IRTTLDAE-------KVFTQGLNILEWLENPSNTPDKDYLL--SIPISCP 239 Query: 182 --GALE--HIPYI---RISNLT-----DALQKM--HSWGFQTIGL-------SSDSKKPL 220 G ++ H Y+ ++ T L+ HS Q GL +DS Sbjct: 240 LIGVIQLAH--YVVTAKLLGFTPGELRSYLKGATGHS---Q--GLVTAVAIAETDS---W 289 Query: 221 EQEIKNDKIAL-IL---GAEGKGLRPKTQETA--TSMAHLHMPGIIKA------------ 262 E + + A+ +L G E TS+ P I++ Sbjct: 290 ESFFVSVRKAITVLFFIGVRC-------YEAYPNTSLP----PSILEDSLENNEGVPSPM 338 Query: 263 LNVSNA--AAVALYITQ-NH 279 L++SN V Y+ + N Sbjct: 339 LSISNLTQEQVQDYVNKTNS 358 >2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis H37RV} PDB: 2z2j_A 2z2k_A 2jrc_A Length = 191 Score = 27.3 bits (60), Expect = 4.0 Identities = 7/40 (17%), Positives = 18/40 (45%) Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205 + ++P+E A + A + + + A ++H+W Sbjct: 152 ENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVHAW 191 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.9 bits (58), Expect = 5.5 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 11/34 (32%) Query: 99 QTIDKIVGKEAVHQGLAL---ETAPLLS--PTLD 127 Q + K+ +A L L ++AP L+ T++ Sbjct: 20 QALKKL---QA---SLKLYADDSAPALAIKATME 47 >1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4 Length = 277 Score = 26.5 bits (58), Expect = 6.6 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 8/96 (8%) Query: 40 SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--------WDANLPHPF 91 R N +G H + R + LL K L+R+ + A HP Sbjct: 63 KRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPL 122 Query: 92 PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127 K+ T+ + E P SP L Sbjct: 123 VPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPELH 158 >3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} Length = 293 Score = 26.4 bits (57), Expect = 8.5 Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 3/73 (4%) Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194 +V N + + V D I T + + ++ IP I Sbjct: 41 ALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKK---AGIPVFAIDR 97 Query: 195 LTDALQKMHSWGF 207 + + + S Sbjct: 98 MIRSDAVVSSITS 110 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.130 0.369 Gapped Lambda K H 0.267 0.0535 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,224,840 Number of extensions: 94924 Number of successful extensions: 383 Number of sequences better than 10.0: 1 Number of HSP's gapped: 365 Number of HSP's successfully gapped: 27 Length of query: 282 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 191 Effective length of database: 3,487,026 Effective search space: 666021966 Effective search space used: 666021966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (25.8 bits)