HHsearch alignment for GI: 254780604 and conserved domain: COG0403
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism].
Probab=98.90 E-value=5.4e-07 Score=64.91 Aligned_cols=315 Identities=17% Similarity=0.211 Sum_probs=170.0
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCHHCCCCCCHHHH-----------HHHHHHHHCCCCCE-
Q ss_conf 7986899811447466779889999-9999999829877641000276402899-----------99988873499733-
Q gi|254780604|r 42 EGSRKVTIWCSNDYLGMGKHPKVIE-NAQRTFEKCGIGAGGTRNIAGTNYYHVM-----------LEKELATLHGKKAA- 108 (401)
Q Consensus 42 ~~~~~~l~f~sndYLgL~~~p~v~~-a~~~a~~~~G~~~~~sr~~~G~~~~~~~-----------LE~~la~~~g~e~a- 108 (401)
T Consensus 71 ~kN~~~~sfiG~GyY~~~~-P~vI~rnile~----------pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VAN 139 (450)
T COG0403 71 SKNKVFTSFIGAGYYDTYT-PPVILRNILEN----------PEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVAN 139 (450)
T ss_pred HCCCHHHHHCCCCCCCCCC-CHHHHHHHHCC----------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 7066145425686468718-27888876438----------542236788863666579999998999999985887445
Q ss_pred -EEEECCCCCHHHHHCCC--CCC-CCCEEEEHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHHHCCCCCCCE
Q ss_conf -77405652012220234--677-887234213211167520145----3165135316799889888674066335623
Q gi|254780604|r 109 -LIFNSGYIANWATIGTL--CSQ-IDNIICFSDSHNHASIIEGIN----KARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180 (401)
Q Consensus 109 -l~~~SG~~An~~~i~~l--~~~-~d~ii~~~D~~~HaSi~~g~~----l~~a~~~~f~HnD~~~Le~~L~~~~~~~~~i 180 (401)
T Consensus 140 ASm~DeaTAaAEAm~ma~r~~k~k~~~~~V--~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~-~--~~~~~gv 214 (450)
T COG0403 140 ASMLDEATAAAEAMLMAKRVTKKKRNKFLV--PKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESA-D--DGDVFGV 214 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEE--CCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHC-C--CCCEEEE
T ss_conf 002316769999999998741476734996--6886877999998611257639999564225566532-4--6773799
Q ss_pred EECCCCCCCCC-CHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCC---CCCCCCCCE--
Q ss_conf 62167435677-336899999984014718997-12110012560258999997202001011014---443222231--
Q gi|254780604|r 181 IIFESIYSMDG-DIAPIKEICDLADQYNAITYI-DEVHAVGIHGSCGAGISEREGIMNRITIISGT---LAKGFGTFG-- 253 (401)
Q Consensus 181 Iv~e~v~Sm~G-~~apL~~l~~l~~~~~~~Liv-DEAH~~Gv~G~~G~G~~~~~g~~~~~di~~~T---lsKa~g~~G-- 253 (401)
T Consensus 215 ~v-QyP-~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe-----~----GADIvvG~~QrfGvPmgfGGPh 283 (450)
T COG0403 215 LV-QYP-NTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGE-----F----GADIVVGSAQRFGVPMGFGGPH 283 (450)
T ss_pred EE-ECC-CCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCC-----C----CCCEEEECCCCCCCCCCCCCCC
T ss_conf 99-768-88773414099999998635977999826367645578410-----3----7866973376047776788756
Q ss_pred -EEEECCHHHHHHH-----------------------------HCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-HHHHH
Q ss_conf -6875484450000-----------------------------0133222333444431478899876432012-01688
Q gi|254780604|r 254 -GYIAASENLCDFI-----------------------------RSFASGFIFSTSLPPAIASASVTSIQYIKQH-YDERK 302 (401)
Q Consensus 254 -G~i~g~~~~~~~l-----------------------------~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~-~~~~~ 302 (401)
T Consensus 284 ag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~h-Gp~GLk~iA~ 362 (450)
T COG0403 284 AGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYH-GPQGLKEIAE 362 (450)
T ss_pred EEEEEEHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHH
T ss_conf 322237586742599843304645899803201287788887640010155489999999999999986-9688999999
Q ss_pred HHHHHHHHHHHHHHHC--CCCCCCCCCCEE--EEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCC
Q ss_conf 8899998766656644--983037898659--999689799999999999737909984048888888721899618579
Q gi|254780604|r 303 KYLERVKQLRHSLENK--AIPCIPNESHII--PIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLH 378 (401)
Q Consensus 303 ~l~~~~~~l~~~L~~~--g~~~~~~~s~Iv--pi~~g~~~~~~~~~~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~l~a~h 378 (401)
T Consensus 363 r~~~~a~~la~~L~~~~~g~~~~~~-~fFdt~~v~~~~-~~~~~l~~~~~-~~G~~L~~~~~-------~~~~ia~tEt~ 432 (450)
T COG0403 363 RIHRLAAYLAAGLKEIGAGVELVFD-HFFDTFTVRVPE-EVAEALLAAAI-AGGINLRRVDA-------DTVLIALTETT 432 (450)
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCC-CCEEEEEEECCH-HHHHHHHHHHH-HCCCCEEEECC-------CCEEEEEECCC
T ss_conf 9999999999987645886475142-422048886463-67999999998-54974145448-------81599951256
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780604|r 379 TDSDIEHLVSSLENVW 394 (401)
Q Consensus 379 t~edid~~~~~l~~v~ 394 (401)
T Consensus 433 t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 433 TKEDIDALVAAFGGVN 448 (450)
T ss_pred CHHHHHHHHHHHHHHC
T ss_conf 7899999999975331