HHsearch alignment for GI: 254780604 and conserved domain: COG1003
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism].
Probab=99.36 E-value=1.7e-10 Score=87.47 Aligned_cols=295 Identities=17% Similarity=0.278 Sum_probs=175.3
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCCEEEE-ECCCCC---HHHHHCCCCC-C---C-CCEEEEHHHHHHHHHHHHHHHCCCC
Q ss_conf 0027640289999988873499733774-056520---1222023467-7---8-8723421321116752014531651
Q gi|254780604|r 84 NIAGTNYYHVMLEKELATLHGKKAALIF-NSGYIA---NWATIGTLCS-Q---I-DNIICFSDSHNHASIIEGINKARCK 154 (401)
Q Consensus 84 ~~~G~~~~~~~LE~~la~~~g~e~al~~-~SG~~A---n~~~i~~l~~-~---~-d~ii~~~D~~~HaSi~~g~~l~~a~ 154 (401)
T Consensus 103 ~vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP-~S-AHGTNPASAam~G~~ 180 (496)
T COG1003 103 QVQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIP-DS-AHGTNPASAAMAGFK 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE-CC-CCCCCHHHHHHCCCE
T ss_conf 8899999999999999974097626406787764156789999999997588777679831-65-568986567654855
Q ss_pred EEEECC-----CCHHHHHHHHHHCCCCCCCEEECC----CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHH
Q ss_conf 353167-----998898886740663356236216----74356773368999999840147189971211001256025
Q gi|254780604|r 155 KVIWNH-----NDLEDLEKNLAATDLSIPKIIIFE----SIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCG 225 (401)
Q Consensus 155 ~~~f~H-----nD~~~Le~~L~~~~~~~~~iIv~e----~v~Sm~G~~apL~~l~~l~~~~~~~LivDEAH~~Gv~G~~G 225 (401)
T Consensus 181 VV~V~~~~~G~VDlddLk~k~~---~~~AalMiTnPsT~GvFE-----~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~r 252 (496)
T COG1003 181 VVVVKCDENGNVDLDDLRAKAE---DNLAALMITNPSTLGVFE-----EDIREICEIVHEAGGQVYYDGANLNAIVGLAR 252 (496)
T ss_pred EEEEECCCCCCCCHHHHHHHHC---CCEEEEEECCCCCCCCCH-----HHHHHHHHHHHHCCCEEEECCCCHHHHHCCCC
T ss_conf 9998328988716999998741---311588861686454504-----51999999999729989844754352522556
Q ss_pred HHHHHHHHCCCCCCHHHCCCCCCCCCC---E----EEEECCHHHHHHHHC----C-CCCCCCC--------CCCCC-HHH
Q ss_conf 899999720200101101444322223---1----687548445000001----3-3222333--------44443-147
Q gi|254780604|r 226 AGISEREGIMNRITIISGTLAKGFGTF---G----GYIAASENLCDFIRS----F-ASGFIFS--------TSLPP-AIA 284 (401)
Q Consensus 226 ~G~~~~~g~~~~~di~~~TlsKa~g~~---G----G~i~g~~~~~~~l~~----~-~~~~ifs--------~~l~p-~~~ 284 (401)
T Consensus 253 PG---d~----G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~ 325 (496)
T COG1003 253 PG---DM----GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSA 325 (496)
T ss_pred CC---CC----CCCEEEEECCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 65---56----563577522311025888899987760258551233898733477753003678776422651455761
Q ss_pred HHHHHHHHHHHC-CHH-H---HHHHHHHHHHHHHHHHHCCCCCCCCCC-CEE-EEEEC-------CHHHHHHHHHHHHHH
Q ss_conf 889987643201-201-6---888899998766656644983037898-659-99968-------979999999999973
Q gi|254780604|r 285 SASVTSIQYIKQ-HYD-E---RKKYLERVKQLRHSLENKAIPCIPNES-HII-PIMVG-------DSHKCTQISNILLKE 350 (401)
Q Consensus 285 aa~~~al~~l~~-~~~-~---~~~l~~~~~~l~~~L~~~g~~~~~~~s-~Iv-pi~~g-------~~~~~~~~~~~lL~e 350 (401)
T Consensus 326 ~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~-~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLl-D 403 (496)
T COG1003 326 SILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG-YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLL-D 403 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEEEEEECHHHHHHCCCCHHHHHHHHH-H
T ss_conf 68999999999875778889899999847999997540-275554788761158996056667642983899999987-2
Q ss_pred CCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7909984048888888721899618579999999999999999997431
Q gi|254780604|r 351 FGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNR 399 (401)
Q Consensus 351 ~Gi~v~~i~~PtVp~g~~rlRi~l~a~ht~edid~~~~~l~~v~~~l~~ 399 (401)
T Consensus 404 ~GfHaPT~~FPliV~~t--LMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 404 YGFHAPTMYFPLIVAGT--LMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred CCCCCCCCCCCCCCCCC--EEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 58888746575335650--453577776889999999999999999874