HHsearch alignment for GI: 254780604 and conserved domain: COG1104
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=99.86 E-value=6.2e-19 Score=141.69 Aligned_cols=322 Identities=16% Similarity=0.193 Sum_probs=209.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHCCCC--CCHHHHHHHHHHHHCCCCC-EEEEEC-CCCCHHHHHCC--CCC----CCC
Q ss_conf 8899999999999829877641000276--4028999998887349973-377405-65201222023--467----788
Q gi|254780604|r 61 HPKVIENAQRTFEKCGIGAGGTRNIAGT--NYYHVMLEKELATLHGKKA-ALIFNS-GYIANWATIGT--LCS----QID 130 (401)
Q Consensus 61 ~p~v~~a~~~a~~~~G~~~~~sr~~~G~--~~~~~~LE~~la~~~g~e~-al~~~S-G~~An~~~i~~--l~~----~~d 130 (401)
T Consensus 14 ~~~v~~~m~~~~~~~-fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~ 92 (386)
T COG1104 14 DPEVLEAMLPYLTEV-FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGK 92 (386)
T ss_pred CHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 899999999998753-1896115575799999999999999998399978089956984777799986487642356898
Q ss_pred CEEEEHHHHHHHHHHHHHHHC---CCCEEEEC--C---CCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 723421321116752014531---65135316--7---998898886740663356236216743567733689999998
Q gi|254780604|r 131 NIICFSDSHNHASIIEGINKA---RCKKVIWN--H---NDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDL 202 (401)
Q Consensus 131 ~ii~~~D~~~HaSi~~g~~l~---~a~~~~f~--H---nD~~~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~apL~~l~~l 202 (401)
T Consensus 93 HIIt--s~iEH~aVl~~~~~Le~~g~~Vtyl~v~~~G~v~~e~L~~al~---~~-T~LVSim~aNnE~G~IQpI~ei~~i 166 (386)
T COG1104 93 HIIT--SAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR---PD-TILVSIMHANNETGTIQPIAEIGEI 166 (386)
T ss_pred EEEE--CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCC---CC-CEEEEEEECCCCEEECCCHHHHHHH
T ss_conf 5887--5543499999999998669757996888897287999998638---88-4599998502682011209999999
Q ss_pred HHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCC-CCCHHHCCCCCCCCCCE-EEEECCHHH-HHHHHCCCCCC--CCCC
Q ss_conf 4014718997121100125602589999972020-01011014443222231-687548445-00000133222--3334
Q gi|254780604|r 203 ADQYNAITYIDEVHAVGIHGSCGAGISEREGIMN-RITIISGTLAKGFGTFG-GYIAASENL-CDFIRSFASGF--IFST 277 (401)
Q Consensus 203 ~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~-~~di~~~TlsKa~g~~G-G~i~g~~~~-~~~l~~~~~~~--ifs~ 277 (401)
T Consensus 167 ~k~~~i~fHvDAvQa~Gki---------pi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g~RsG 237 (386)
T COG1104 167 CKERGILFHVDAVQAVGKI---------PIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRLEPLIHGGGQERGLRSG 237 (386)
T ss_pred HHHCCCEEEEEHHHHCCCE---------ECCCCCCCCCEEEEEHHHCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCC
T ss_conf 9975981797613325760---------0460215765687311213699842799987998737446047678997888
Q ss_pred CCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHC--CCCCCCCC----CCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 44431478899876432012-016888899998766656644--98303789----865999968979999999999973
Q gi|254780604|r 278 SLPPAIASASVTSIQYIKQH-YDERKKYLERVKQLRHSLENK--AIPCIPNE----SHIIPIMVGDSHKCTQISNILLKE 350 (401)
Q Consensus 278 ~l~p~~~aa~~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~--g~~~~~~~----s~Ivpi~~g~~~~~~~~~~~lL~e 350 (401)
T Consensus 238 Tenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~-gE~l-l~~L~~ 315 (386)
T COG1104 238 TENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE-GESL-LLALDL 315 (386)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCC-HHHH-HHHCCC
T ss_conf 75579999999999999987788899999999999999985099689868854578986899968975-7899-986104
Q ss_pred CCEEEEEECC-------C-------CCC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7909984048-------8-------888--887218996185799999999999999999974312
Q gi|254780604|r 351 FGIYIQPINY-------P-------TVA--KKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRY 400 (401)
Q Consensus 351 ~Gi~v~~i~~-------P-------tVp--~g~~rlRi~l~a~ht~edid~~~~~l~~v~~~l~~~ 400 (401)
T Consensus 316 ~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 316 AGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 086873364345899871499998099968837248997379998999999999999999998630