HHsearch alignment for GI: 254780604 and conserved domain: PRK01278

>PRK01278 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=100.00  E-value=4.7e-32  Score=226.07  Aligned_cols=346  Identities=19%  Similarity=0.219  Sum_probs=239.1

Q ss_pred             CCCEEE--CCCCCCCCCCCCEEEECCCCEEEEEECCCCC-CCCC-CCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHH
Q ss_conf             975350--0134555576310231479868998114474-6677-98899999999999829877641000276402899
Q gi|254780604|r   19 RYRFFT--ELAYEQYQFPYAIHNSDEGSRKVTIWCSNDY-LGMG-KHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVM   94 (401)
Q Consensus        19 ~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~l~f~sndY-LgL~-~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~   94 (401)
T Consensus         6 ~~~~y~~~Pi~i~~a~---G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~l~-~--~~~~~--~~~~~~~   77 (389)
T PRK01278          6 LLPVYNRADLRFERGE---GVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLW-H--VSNLY--RIPEQER   77 (389)
T ss_pred             CCCCCCCCCCCEEEEE---CCEEEECCCCEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCC-C--CCCCC--CCHHHHH
T ss_conf             4355899997779976---5999979989999936098861228997899999999986566-7--65653--6879999


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCHHHHHCCC------CC-CC-CCEEEEHHHHHHHHHHHHHHHCCC------------C
Q ss_conf             9998887349973377405652012220234------67-78-872342132111675201453165------------1
Q gi|254780604|r   95 LEKELATLHGKKAALIFNSGYIANWATIGTL------CS-QI-DNIICFSDSHNHASIIEGINKARC------------K  154 (401)
Q Consensus        95 LE~~la~~~g~e~al~~~SG~~An~~~i~~l------~~-~~-d~ii~~~D~~~HaSi~~g~~l~~a------------~  154 (401)
T Consensus        78 la~~L~~~~~~d~v~f~~sGsEAve~AlklAr~~~~~~g~t~r~~ii~~-~~~yHG~t~~~~s~sg~~~~~~~~~p~~~~  156 (389)
T PRK01278         78 LAERLVENSFADKVFFTNSGAEAVECAIKTARRYQYGKGHPERYRIITF-EGAFHGRTLATIAATGQEKYLEGFGPLVDG  156 (389)
T ss_pred             HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf             9999753367687999687489999999999998885399997289998-888886763511357884433666899888


Q ss_pred             EEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHH----HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHH-H
Q ss_conf             35316799889888674066335623621674356773368----999999840147189971211001256025899-9
Q gi|254780604|r  155 KVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAP----IKEICDLADQYNAITYIDEVHAVGIHGSCGAGI-S  229 (401)
Q Consensus       155 ~~~f~HnD~~~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~ap----L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~-~  229 (401)
T Consensus       157 ~~~~~~~d~~~l~~~~~~---~-iAaviiEPi~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEV~-tG-fGRtG~~fa~  230 (389)
T PRK01278        157 FDQVPFGDIEALKAAITP---N-TAAILIEPIQGEGGIRPLPDEFLKGLRQLCDENGLLLIFDEVQ-CG-VGRTGKLFAH  230 (389)
T ss_pred             EEECCCCCHHHHHHHHCC---C-CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEE-CC-CCCCCCCCHH
T ss_conf             246778978999986288---8-1799996888888960699999999999998606538742100-07-7755664220


Q ss_pred             HHHHCCCCCCHHHCCCCCCCCCCE---EEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             997202001011014443222231---68754844500000133222333444431478899876432012016888899
Q gi|254780604|r  230 EREGIMNRITIISGTLAKGFGTFG---GYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLE  306 (401)
Q Consensus       230 ~~~g~~~~~di~~~TlsKa~g~~G---G~i~g~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~~~~~~~l~~  306 (401)
T Consensus       231 e~~gv~PD--iv--~~gK~l~g-G~P~sav~~~~ei~~~~~~g~~~--~T~~gnp~~~aaala~L~~i~~~-~l~~~v~~  302 (389)
T PRK01278        231 EWAGVTPD--IM--ALAKGIGG-GFPLGACLATEEAAKGMTPGTHG--STYGGNPLAMAVGNAVLDVVLAP-GFLDNVQK  302 (389)
T ss_pred             HCCCCCCC--EE--EECCCCCC-CCCEEEEEECHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHC-CHHHHHHH
T ss_conf             03676898--67--87012468-87427998638878543688767--79997999999999999999864-69999999


Q ss_pred             HHHHHHHHHHHC--CCC-C---CCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCH
Q ss_conf             998766656644--983-0---3789865999968979999999999973790998404888888872189961857999
Q gi|254780604|r  307 RVKQLRHSLENK--AIP-C---IPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTD  380 (401)
Q Consensus       307 ~~~~l~~~L~~~--g~~-~---~~~~s~Ivpi~~g~~~~~~~~~~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~l~a~ht~  380 (401)
T Consensus       303 ~G~~l~~~L~~l~~~~p~~i~~vRG~Gl~~gie~~~~--~~~i~~~~~-~~Gll~~~-------~g~~~lr~~PpL~it~  372 (389)
T PRK01278        303 MGLYLKQKLESLVDRFPDVIEEVRGEGLMLGLKCVVP--SRDLVAALR-DEGLLTVP-------AGDNVVRLLPPLIITE  372 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCC--HHHHHHHHH-HCCCEEEE-------CCCCEEEEECCCCCCH
T ss_conf             9999999999998768671355645036999994588--999999999-79938972-------7999799978813989


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999974
Q gi|254780604|r  381 SDIEHLVSSLENVWQKM  397 (401)
Q Consensus       381 edid~~~~~l~~v~~~l  397 (401)
T Consensus       373 ~ei~~~~~~l~~al~~v  389 (389)
T PRK01278        373 EEIDEALERLERAAESL  389 (389)
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999999759