HHsearch alignment for GI: 254780604 and conserved domain: PRK04612

>PRK04612 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=100.00  E-value=3.7e-30  Score=213.91  Aligned_cols=334  Identities=20%  Similarity=0.244  Sum_probs=224.0

Q ss_pred             CEEEECCCCEEEEEECC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf             10231479868998114---4746677988999999999998298776410002764028999998887349-9733774
Q gi|254780604|r   36 AIHNSDEGSRKVTIWCS---NDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG-KKAALIF  111 (401)
Q Consensus        36 ~~~~~~~~~~~~l~f~s---ndYLgL~~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~g-~e~al~~  111 (401)
T Consensus        31 G~~l~D~dG~~ylD~~sg~~~~~lGh-~hp~v~~Ai~~Q~~~l~~---~~~~~--~~~~~~~lae~L~~~~~~~~~v~f~  104 (408)
T PRK04612         31 GSRVWDDQGREYLDLSSGIAVSGLGH-NDPDLVAALTEQAGKLWH---TSNVF--FSAPPLKLAEELVTASRFAEKVFLC  104 (408)
T ss_pred             CCEEEECCCCEEEEECHHHHHHHHCC-CCHHHHHHHHHHHHHCCC---CCCCC--CCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             39999698899999245077512258-989999999999865257---66752--2658999999997226887669971


Q ss_pred             ECCCCCHHHHHCCCC------C-C--CCCEEEEHHHHHHHHHHHHHHHCCC------------CEEEECCCCHHHHHHHH
Q ss_conf             056520122202346------7-7--8872342132111675201453165------------13531679988988867
Q gi|254780604|r  112 NSGYIANWATIGTLC------S-Q--IDNIICFSDSHNHASIIEGINKARC------------KKVIWNHNDLEDLEKNL  170 (401)
Q Consensus       112 ~SG~~An~~~i~~l~------~-~--~d~ii~~~D~~~HaSi~~g~~l~~a------------~~~~f~HnD~~~Le~~L  170 (401)
T Consensus       105 ~SGsEAvE~AlKlAr~y~~~~G~~~~k~~ii~~-~~syHG~t~~als~t~~~~~~~~~~p~p~~~~~~~~~d~~~le~~~  183 (408)
T PRK04612        105 NSGTEANEAAIKLVRKWASSQGRPADKRVIVTF-RGSFHGRTLASVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAM  183 (408)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHC
T ss_conf             874689999999999998732887777699998-5852598767422567843346888998852543667499999715


Q ss_pred             HHCCCCCCCEEECCCCCCCCCCHHH----HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH-HHHHCCCCCCHHHCCC
Q ss_conf             4066335623621674356773368----9999998401471899712110012560258999-9972020010110144
Q gi|254780604|r  171 AATDLSIPKIIIFESIYSMDGDIAP----IKEICDLADQYNAITYIDEVHAVGIHGSCGAGIS-EREGIMNRITIISGTL  245 (401)
Q Consensus       171 ~~~~~~~~~iIv~e~v~Sm~G~~ap----L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~-~~~g~~~~~di~~~Tl  245 (401)
T Consensus       184 ~~---~~iAAvivEPi~g~gG~~~~~~~yl~~l~~lc~~~gillI~DEV~-TG-fGRtG~~fa~~~~~v~PD--ii--~~  254 (408)
T PRK04612        184 AG---GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQ-CG-MGRTGTLFAHWQEQVTPD--IV--TL  254 (408)
T ss_pred             CC---CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC-CC-CCCCCCHHHHHHCCCCCC--EE--EE
T ss_conf             69---978999997867888830689999999999997569469850122-47-886762035551289999--89--97


Q ss_pred             CCCCCCCE---EEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC--C
Q ss_conf             43222231---687548445000001332223334444314788998764320120168888999987666566449--8
Q gi|254780604|r  246 AKGFGTFG---GYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKA--I  320 (401)
Q Consensus       246 sKa~g~~G---G~i~g~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~g--~  320 (401)
T Consensus       255 gKglg~-G~Pl~av~~~~~i~~~~~~~~h~~T~--~gnpla~aaala~L~~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~  330 (408)
T PRK04612        255 AKALGG-GFPIGAMLAGPKVAETMQFGAHGTTF--GGNPLAAAVARVALRKLASP-QIAANVARQSAALRAGLEALNAEF  330 (408)
T ss_pred             EHHHCC-CCCEEEEEECHHHHHHCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             232238-87628999868888514689978888--73599999999999999866-699999999999999999987407


Q ss_pred             CC---CCCCCCEEEEEEC--CHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             30---3789865999968--979999999999973790998404888888872189961857999999999999999999
Q gi|254780604|r  321 PC---IPNESHIIPIMVG--DSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQ  395 (401)
Q Consensus       321 ~~---~~~~s~Ivpi~~g--~~~~~~~~~~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~l~a~ht~edid~~~~~l~~v~~  395 (401)
T Consensus       331 ~~i~~vRG~GLm~giel~~~~~~~~~~i~~~~~-~~Gll~~~-------~g~~~irl~PPL~it~~eide~l~~l~~al~  402 (408)
T PRK04612        331 GVFAQIRGRGLMLGAVLAPAHAGQAGAILDLAA-EHGLLLLQ-------AGPDVLRFVPALNLTDAELADGLARLRLALA  402 (408)
T ss_pred             CCEEEECCCCEEEEEEECCCCCCHHHHHHHHHH-HCCCEEEC-------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             988832204469999954788626999999999-78919931-------7999799968833889999999999999999


Q ss_pred             HH
Q ss_conf             74
Q gi|254780604|r  396 KM  397 (401)
Q Consensus       396 ~l  397 (401)
T Consensus       403 ~~  404 (408)
T PRK04612        403 AY  404 (408)
T ss_pred             HH
T ss_conf             99