HHsearch alignment for GI: 254780604 and conserved domain: PRK04612
>PRK04612 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=100.00 E-value=3.7e-30 Score=213.91 Aligned_cols=334 Identities=20% Similarity=0.244 Sum_probs=224.0
Q ss_pred CEEEECCCCEEEEEECC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 10231479868998114---4746677988999999999998298776410002764028999998887349-9733774
Q gi|254780604|r 36 AIHNSDEGSRKVTIWCS---NDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG-KKAALIF 111 (401)
Q Consensus 36 ~~~~~~~~~~~~l~f~s---ndYLgL~~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~g-~e~al~~ 111 (401)
T Consensus 31 G~~l~D~dG~~ylD~~sg~~~~~lGh-~hp~v~~Ai~~Q~~~l~~---~~~~~--~~~~~~~lae~L~~~~~~~~~v~f~ 104 (408)
T PRK04612 31 GSRVWDDQGREYLDLSSGIAVSGLGH-NDPDLVAALTEQAGKLWH---TSNVF--FSAPPLKLAEELVTASRFAEKVFLC 104 (408)
T ss_pred CCEEEECCCCEEEEECHHHHHHHHCC-CCHHHHHHHHHHHHHCCC---CCCCC--CCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 39999698899999245077512258-989999999999865257---66752--2658999999997226887669971
Q ss_pred ECCCCCHHHHHCCCC------C-C--CCCEEEEHHHHHHHHHHHHHHHCCC------------CEEEECCCCHHHHHHHH
Q ss_conf 056520122202346------7-7--8872342132111675201453165------------13531679988988867
Q gi|254780604|r 112 NSGYIANWATIGTLC------S-Q--IDNIICFSDSHNHASIIEGINKARC------------KKVIWNHNDLEDLEKNL 170 (401)
Q Consensus 112 ~SG~~An~~~i~~l~------~-~--~d~ii~~~D~~~HaSi~~g~~l~~a------------~~~~f~HnD~~~Le~~L 170 (401)
T Consensus 105 ~SGsEAvE~AlKlAr~y~~~~G~~~~k~~ii~~-~~syHG~t~~als~t~~~~~~~~~~p~p~~~~~~~~~d~~~le~~~ 183 (408)
T PRK04612 105 NSGTEANEAAIKLVRKWASSQGRPADKRVIVTF-RGSFHGRTLASVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAM 183 (408)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHC
T ss_conf 874689999999999998732887777699998-5852598767422567843346888998852543667499999715
Q ss_pred HHCCCCCCCEEECCCCCCCCCCHHH----HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH-HHHHCCCCCCHHHCCC
Q ss_conf 4066335623621674356773368----9999998401471899712110012560258999-9972020010110144
Q gi|254780604|r 171 AATDLSIPKIIIFESIYSMDGDIAP----IKEICDLADQYNAITYIDEVHAVGIHGSCGAGIS-EREGIMNRITIISGTL 245 (401)
Q Consensus 171 ~~~~~~~~~iIv~e~v~Sm~G~~ap----L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~-~~~g~~~~~di~~~Tl 245 (401)
T Consensus 184 ~~---~~iAAvivEPi~g~gG~~~~~~~yl~~l~~lc~~~gillI~DEV~-TG-fGRtG~~fa~~~~~v~PD--ii--~~ 254 (408)
T PRK04612 184 AG---GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQ-CG-MGRTGTLFAHWQEQVTPD--IV--TL 254 (408)
T ss_pred CC---CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC-CC-CCCCCCHHHHHHCCCCCC--EE--EE
T ss_conf 69---978999997867888830689999999999997569469850122-47-886762035551289999--89--97
Q ss_pred CCCCCCCE---EEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC--C
Q ss_conf 43222231---687548445000001332223334444314788998764320120168888999987666566449--8
Q gi|254780604|r 246 AKGFGTFG---GYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKA--I 320 (401)
Q Consensus 246 sKa~g~~G---G~i~g~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~g--~ 320 (401)
T Consensus 255 gKglg~-G~Pl~av~~~~~i~~~~~~~~h~~T~--~gnpla~aaala~L~~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~ 330 (408)
T PRK04612 255 AKALGG-GFPIGAMLAGPKVAETMQFGAHGTTF--GGNPLAAAVARVALRKLASP-QIAANVARQSAALRAGLEALNAEF 330 (408)
T ss_pred EHHHCC-CCCEEEEEECHHHHHHCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 232238-87628999868888514689978888--73599999999999999866-699999999999999999987407
Q ss_pred CC---CCCCCCEEEEEEC--CHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 30---3789865999968--979999999999973790998404888888872189961857999999999999999999
Q gi|254780604|r 321 PC---IPNESHIIPIMVG--DSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQ 395 (401)
Q Consensus 321 ~~---~~~~s~Ivpi~~g--~~~~~~~~~~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~l~a~ht~edid~~~~~l~~v~~ 395 (401)
T Consensus 331 ~~i~~vRG~GLm~giel~~~~~~~~~~i~~~~~-~~Gll~~~-------~g~~~irl~PPL~it~~eide~l~~l~~al~ 402 (408)
T PRK04612 331 GVFAQIRGRGLMLGAVLAPAHAGQAGAILDLAA-EHGLLLLQ-------AGPDVLRFVPALNLTDAELADGLARLRLALA 402 (408)
T ss_pred CCEEEECCCCEEEEEEECCCCCCHHHHHHHHHH-HCCCEEEC-------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 988832204469999954788626999999999-78919931-------7999799968833889999999999999999
Q ss_pred HH
Q ss_conf 74
Q gi|254780604|r 396 KM 397 (401)
Q Consensus 396 ~l 397 (401)
T Consensus 403 ~~ 404 (408)
T PRK04612 403 AY 404 (408)
T ss_pred HH
T ss_conf 99