HHsearch alignment for GI: 254780604 and conserved domain: TIGR00700
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632 Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=99.88 E-value=7.2e-21 Score=154.16 Aligned_cols=335 Identities=18% Similarity=0.233 Sum_probs=222.0
Q ss_pred EEEECCCCEEEEEECCCCCCCCC------CCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHC---CCCC
Q ss_conf 02314798689981144746677------98899999999999829877641000276402899999888734---9973
Q gi|254780604|r 37 IHNSDEGSRKVTIWCSNDYLGMG------KHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLH---GKKA 107 (401)
Q Consensus 37 ~~~~~~~~~~~l~f~sndYLgL~------~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~---g~e~ 107 (401)
T Consensus 25 a~l~DvdGnr~IDfa~----gIavln~GhshP~vV~AV~~Q~~ef-~Ht~f--~v~-pYe~Yv~lAEkln~iaPgSg~kk 96 (427)
T TIGR00700 25 AILKDVDGNRYIDFAA----GIAVLNVGHSHPKVVEAVKRQVEEF-THTAF--QVV-PYESYVELAEKLNAIAPGSGEKK 96 (427)
T ss_pred CEEEECCCCEEEHHCC----CHHHHCCCCCCHHHHHHHHHHHHHH-CCCCC--EEE-CCHHHHHHHHHHCCCCCCCCCHH
T ss_conf 4787437752100011----0232036898735899999999974-38853--452-16258999999715788973100
Q ss_pred EEEEECCCCCHHHHHC---CCCCCCCCEEEEHHHHHHHHHHHHHHHC-CC------------CEEE--EC--C-------
Q ss_conf 3774056520122202---3467788723421321116752014531-65------------1353--16--7-------
Q gi|254780604|r 108 ALIFNSGYIANWATIG---TLCSQIDNIICFSDSHNHASIIEGINKA-RC------------KKVI--WN--H------- 160 (401)
Q Consensus 108 al~~~SG~~An~~~i~---~l~~~~d~ii~~~D~~~HaSi~~g~~l~-~a------------~~~~--f~--H------- 160 (401)
T Consensus 97 ~~ffnsGAEAVENAVKIAR~yTgrp-gVvaF-~~gfHGRTnmTMalT~Kv~PYK~GFGPFapevY~aP~py~y~~~~~~~ 174 (427)
T TIGR00700 97 AVFFNSGAEAVENAVKIARKYTGRP-GVVAF-DRGFHGRTNMTMALTAKVKPYKIGFGPFAPEVYRAPYPYDYRDIALDK 174 (427)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCC-CEEEE-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 0211154378888999998745896-16863-687466126788765227873457888674521168872002433442
Q ss_pred ----CC--HHHHHHHHHHC---CCCCCCEEECCCCCCCCCCHHH----HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf ----99--88988867406---6335623621674356773368----99999984014718997121100125602589
Q gi|254780604|r 161 ----ND--LEDLEKNLAAT---DLSIPKIIIFESIYSMDGDIAP----IKEICDLADQYNAITYIDEVHAVGIHGSCGAG 227 (401)
Q Consensus 161 ----nD--~~~Le~~L~~~---~~~~~~iIv~e~v~Sm~G~~ap----L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G 227 (401)
T Consensus 175 q~s~d~m~~~A~~~~f~~dkqv~a~~vAa~v~EPvQGEGGFivp~k~fv~a~~~~C~ehgiVfiADEvQ-tG-FARTG~~ 252 (427)
T TIGR00700 175 QESLDDMVLAAIEALFVADKQVEAENVAAVVIEPVQGEGGFIVPAKEFVAAVLDLCKEHGIVFIADEVQ-TG-FARTGKL 252 (427)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCC-CC-CCHHCCC
T ss_conf 222003899999983121033250104378973224788733385889999999754387589972545-68-0000211
Q ss_pred HH-HHHHCCC-CCCHHHCCCCCCCCC--CEEEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99-9972020-010110144432222--3168754844500000133222333444431478899876432012016888
Q gi|254780604|r 228 IS-EREGIMN-RITIISGTLAKGFGT--FGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKK 303 (401)
Q Consensus 228 ~~-~~~g~~~-~~di~~~TlsKa~g~--~GG~i~g~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~~~~~~~ 303 (401)
T Consensus 253 FA~eH~~~dGl~PDLi--t~aKslA~GlPLSgV~GrAeimdAp--apGgLGGTyaGnPlacAAAlAvl~iIe~e-gL~ER 327 (427)
T TIGR00700 253 FAIEHYDDDGLKPDLI--TVAKSLADGLPLSGVVGRAEIMDAP--APGGLGGTYAGNPLACAAALAVLDIIEEE-GLIER 327 (427)
T ss_pred EEEEECCCCCCCCCHH--HHHHHHHCCCCCCHHHCCHHHCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CHHHH
T ss_conf 2541006788875188--7866773568621110441211688--88888775568879999999999863113-12478
Q ss_pred HHHHHHHHHHHHHHCC--CCC---CCCCCCEEEEEE--------CCHHHHHHHHHHHHHHCCEEE-EEECCCCCCCCCCE
Q ss_conf 8999987666566449--830---378986599996--------897999999999997379099-84048888888721
Q gi|254780604|r 304 YLERVKQLRHSLENKA--IPC---IPNESHIIPIMV--------GDSHKCTQISNILLKEFGIYI-QPINYPTVAKKKER 369 (401)
Q Consensus 304 l~~~~~~l~~~L~~~g--~~~---~~~~s~Ivpi~~--------g~~~~~~~~~~~lL~e~Gi~v-~~i~~PtVp~g~~r 369 (401)
T Consensus 328 a~qig~~~~d~l~~~k~~~p~IgdvRglGaMiAvE~vkdp~T~EPda~~a~~ia~~A~-a~GlllLTcG~~-----G-Ni 400 (427)
T TIGR00700 328 AEQIGKLVKDKLIELKEEVPAIGDVRGLGAMIAVELVKDPDTTEPDAALAEKIAAAAL-AAGLLLLTCGIY-----G-NI 400 (427)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCHHHHHCCHH-----C-CH
T ss_conf 9998788988888887606721112026335788865488788831799999999997-568221230301-----1-55
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89961857999999999999999999
Q gi|254780604|r 370 LRVTLTPLHTDSDIEHLVSSLENVWQ 395 (401)
Q Consensus 370 lRi~l~a~ht~edid~~~~~l~~v~~ 395 (401)
T Consensus 401 IRfL~PLtI~D~ll~egl~Il~a~L~ 426 (427)
T TIGR00700 401 IRFLTPLTISDELLDEGLDILEAALA 426 (427)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 54348865467889889999999852