HHsearch alignment for GI: 254780604 and conserved domain: TIGR00713
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=100.00 E-value=4.5e-36 Score=251.91 Aligned_cols=332 Identities=22% Similarity=0.355 Sum_probs=241.2
Q ss_pred EEEECCCCEEEEEECC-CCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHC-CC--CCEEEE
Q ss_conf 0231479868998114-4746677-98899999999999829877641000276402899999888734-99--733774
Q gi|254780604|r 37 IHNSDEGSRKVTIWCS-NDYLGMG-KHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLH-GK--KAALIF 111 (401)
Q Consensus 37 ~~~~~~~~~~~l~f~s-ndYLgL~-~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~-g~--e~al~~ 111 (401)
T Consensus 40 ~~l~DvDG~~YIDyv~swGPLILGHahp~v~~Av~e~ler-G~syG~------PtE~Ei~lA~~i~~~v~~~t~e~vRfV 112 (434)
T TIGR00713 40 AYLYDVDGNEYIDYVLSWGPLILGHAHPKVVEAVKEALER-GTSYGA------PTEAEILLAKEIISRVPSVTEEMVRFV 112 (434)
T ss_pred CEEEECCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCC------CCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 7788338880012110000201178976899999999973-012689------988999999999864055546516862
Q ss_pred ECCCCCHHHHHC---CCCCCCCCEEEEHHHHH-H---HHH----------HH--HHHHCCC-------CEEEECCCCHHH
Q ss_conf 056520122202---34677887234213211-1---675----------20--1453165-------135316799889
Q gi|254780604|r 112 NSGYIANWATIG---TLCSQIDNIICFSDSHN-H---ASI----------IE--GINKARC-------KKVIWNHNDLED 165 (401)
Q Consensus 112 ~SG~~An~~~i~---~l~~~~d~ii~~~D~~~-H---aSi----------~~--g~~l~~a-------~~~~f~HnD~~~ 165 (401)
T Consensus 113 nSGTEATMsAvRLARG~TGR~~-IiKFe--GcYHGh~D~lLv~AGSGaaT~g~CG~P~SpGvP~~~~k~Tl~~PYND~~a 189 (434)
T TIGR00713 113 NSGTEATMSAVRLARGFTGRDK-IIKFE--GCYHGHHDALLVKAGSGAATLGSCGLPTSPGVPEDFAKLTLVLPYNDLEA 189 (434)
T ss_pred CCCCHHHHHHHHHHHHCCCCCC-EEEEC--CCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHH
T ss_conf 1764889999998631058872-78861--76410123200354521010468877888887011431134045173899
Q ss_pred HHHHHHHCCCCCCCEEECCCCCCCCCCHHH----HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf 888674066335623621674356773368----9999998401471899712110012560258999997202001011
Q gi|254780604|r 166 LEKNLAATDLSIPKIIIFESIYSMDGDIAP----IKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITII 241 (401)
Q Consensus 166 Le~~L~~~~~~~~~iIv~e~v~Sm~G~~ap----L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~~~di~ 241 (401)
T Consensus 190 ~~~~f~~~G~~iA-gvIvEPv~GNmGvvpP~~eFL~~Lr~lt~e~g~LLI~DEV~-TGFRva~-~GAQ~yfgV~PDl~-- 264 (434)
T TIGR00713 190 LEEAFEEYGEEIA-GVIVEPVAGNMGVVPPKKEFLEGLRELTEEYGALLIFDEVI-TGFRVAL-GGAQEYFGVEPDLT-- 264 (434)
T ss_pred HHHHHHHCCCCEE-EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCC-CHHHCCH-HHCCHHCCCCCCCE--
T ss_conf 9999986798343-78861202576664885223589999998729577550221-0122133-21501137874103--
Q ss_pred HCCCCCCCCC--CEEEEECCHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0144432222--31687548445000001332223334---444314788998764320120168888999987666566
Q gi|254780604|r 242 SGTLAKGFGT--FGGYIAASENLCDFIRSFASGFIFST---SLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLE 316 (401)
Q Consensus 242 ~~TlsKa~g~--~GG~i~g~~~~~~~l~~~~~~~ifs~---~l~p~~~aa~~~al~~l~~~~~~~~~l~~~~~~l~~~L~ 316 (401)
T Consensus 265 --~lGKI~GGGlP~gA~gGrrEiM~~l--aP~G~vYQAGTlsGNPlam~AG~atLk~~~~~~~~Y~~l~~~~~~L~~g~~ 340 (434)
T TIGR00713 265 --TLGKIIGGGLPVGAFGGRREIMERL--APEGPVYQAGTLSGNPLAMAAGLATLKLLDEEKGVYTELDELAKRLAEGLS 340 (434)
T ss_pred --EECHHHCCCCCCEEECCCHHHHHHH--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf --4233233764510122675688431--788774456435558899999999999853488834899999999999999
Q ss_pred H----CCCCC-CCCCCCEEEEEEC-CHH-------------HHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCC
Q ss_conf 4----49830-3789865999968-979-------------999999999973790998404888888872189961857
Q gi|254780604|r 317 N----KAIPC-IPNESHIIPIMVG-DSH-------------KCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPL 377 (401)
Q Consensus 317 ~----~g~~~-~~~~s~Ivpi~~g-~~~-------------~~~~~~~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~l~a~ 377 (401)
T Consensus 341 e~l~~~gip~~~~~~gSMf~~FFtd~~~V~ny~~A~~SD~e~F~~Ff~~mL-~~GVylpPS~FEa~---------F~S~A 410 (434)
T TIGR00713 341 EVLEDKGIPHTVNRVGSMFSLFFTDEEEVTNYADAKKSDTELFAKFFHEML-EKGVYLPPSQFEAC---------FISAA 410 (434)
T ss_pred HHHHHCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCHHHH---------HHCCC
T ss_conf 999827985899504400456657788987889998861898899999998-58887898721155---------51677
Q ss_pred CCHHHHH----HHHHHHHHHHHHH
Q ss_conf 9999999----9999999999974
Q gi|254780604|r 378 HTDSDIE----HLVSSLENVWQKM 397 (401)
Q Consensus 378 ht~edid----~~~~~l~~v~~~l 397 (401)
T Consensus 411 H~~E~i~yaq~~ti~a~~~~f~~~ 434 (434)
T TIGR00713 411 HTEEDIEYAQTNTIEAAEEVFAEL 434 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 772117899999999999998409