HHsearch alignment for GI: 254780604 and conserved domain: TIGR00713

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=100.00  E-value=4.5e-36  Score=251.91  Aligned_cols=332  Identities=22%  Similarity=0.355  Sum_probs=241.2

Q ss_pred             EEEECCCCEEEEEECC-CCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHC-CC--CCEEEE
Q ss_conf             0231479868998114-4746677-98899999999999829877641000276402899999888734-99--733774
Q gi|254780604|r   37 IHNSDEGSRKVTIWCS-NDYLGMG-KHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLH-GK--KAALIF  111 (401)
Q Consensus        37 ~~~~~~~~~~~l~f~s-ndYLgL~-~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~-g~--e~al~~  111 (401)
T Consensus        40 ~~l~DvDG~~YIDyv~swGPLILGHahp~v~~Av~e~ler-G~syG~------PtE~Ei~lA~~i~~~v~~~t~e~vRfV  112 (434)
T TIGR00713        40 AYLYDVDGNEYIDYVLSWGPLILGHAHPKVVEAVKEALER-GTSYGA------PTEAEILLAKEIISRVPSVTEEMVRFV  112 (434)
T ss_pred             CEEEECCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCC------CCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             7788338880012110000201178976899999999973-012689------988999999999864055546516862


Q ss_pred             ECCCCCHHHHHC---CCCCCCCCEEEEHHHHH-H---HHH----------HH--HHHHCCC-------CEEEECCCCHHH
Q ss_conf             056520122202---34677887234213211-1---675----------20--1453165-------135316799889
Q gi|254780604|r  112 NSGYIANWATIG---TLCSQIDNIICFSDSHN-H---ASI----------IE--GINKARC-------KKVIWNHNDLED  165 (401)
Q Consensus       112 ~SG~~An~~~i~---~l~~~~d~ii~~~D~~~-H---aSi----------~~--g~~l~~a-------~~~~f~HnD~~~  165 (401)
T Consensus       113 nSGTEATMsAvRLARG~TGR~~-IiKFe--GcYHGh~D~lLv~AGSGaaT~g~CG~P~SpGvP~~~~k~Tl~~PYND~~a  189 (434)
T TIGR00713       113 NSGTEATMSAVRLARGFTGRDK-IIKFE--GCYHGHHDALLVKAGSGAATLGSCGLPTSPGVPEDFAKLTLVLPYNDLEA  189 (434)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCC-EEEEC--CCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHH
T ss_conf             1764889999998631058872-78861--76410123200354521010468877888887011431134045173899


Q ss_pred             HHHHHHHCCCCCCCEEECCCCCCCCCCHHH----HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf             888674066335623621674356773368----9999998401471899712110012560258999997202001011
Q gi|254780604|r  166 LEKNLAATDLSIPKIIIFESIYSMDGDIAP----IKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITII  241 (401)
Q Consensus       166 Le~~L~~~~~~~~~iIv~e~v~Sm~G~~ap----L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~~~di~  241 (401)
T Consensus       190 ~~~~f~~~G~~iA-gvIvEPv~GNmGvvpP~~eFL~~Lr~lt~e~g~LLI~DEV~-TGFRva~-~GAQ~yfgV~PDl~--  264 (434)
T TIGR00713       190 LEEAFEEYGEEIA-GVIVEPVAGNMGVVPPKKEFLEGLRELTEEYGALLIFDEVI-TGFRVAL-GGAQEYFGVEPDLT--  264 (434)
T ss_pred             HHHHHHHCCCCEE-EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCC-CHHHCCH-HHCCHHCCCCCCCE--
T ss_conf             9999986798343-78861202576664885223589999998729577550221-0122133-21501137874103--


Q ss_pred             HCCCCCCCCC--CEEEEECCHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             0144432222--31687548445000001332223334---444314788998764320120168888999987666566
Q gi|254780604|r  242 SGTLAKGFGT--FGGYIAASENLCDFIRSFASGFIFST---SLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLE  316 (401)
Q Consensus       242 ~~TlsKa~g~--~GG~i~g~~~~~~~l~~~~~~~ifs~---~l~p~~~aa~~~al~~l~~~~~~~~~l~~~~~~l~~~L~  316 (401)
T Consensus       265 --~lGKI~GGGlP~gA~gGrrEiM~~l--aP~G~vYQAGTlsGNPlam~AG~atLk~~~~~~~~Y~~l~~~~~~L~~g~~  340 (434)
T TIGR00713       265 --TLGKIIGGGLPVGAFGGRREIMERL--APEGPVYQAGTLSGNPLAMAAGLATLKLLDEEKGVYTELDELAKRLAEGLS  340 (434)
T ss_pred             --EECHHHCCCCCCEEECCCHHHHHHH--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             --4233233764510122675688431--788774456435558899999999999853488834899999999999999


Q ss_pred             H----CCCCC-CCCCCCEEEEEEC-CHH-------------HHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCC
Q ss_conf             4----49830-3789865999968-979-------------999999999973790998404888888872189961857
Q gi|254780604|r  317 N----KAIPC-IPNESHIIPIMVG-DSH-------------KCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPL  377 (401)
Q Consensus       317 ~----~g~~~-~~~~s~Ivpi~~g-~~~-------------~~~~~~~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~l~a~  377 (401)
T Consensus       341 e~l~~~gip~~~~~~gSMf~~FFtd~~~V~ny~~A~~SD~e~F~~Ff~~mL-~~GVylpPS~FEa~---------F~S~A  410 (434)
T TIGR00713       341 EVLEDKGIPHTVNRVGSMFSLFFTDEEEVTNYADAKKSDTELFAKFFHEML-EKGVYLPPSQFEAC---------FISAA  410 (434)
T ss_pred             HHHHHCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCHHHH---------HHCCC
T ss_conf             999827985899504400456657788987889998861898899999998-58887898721155---------51677


Q ss_pred             CCHHHHH----HHHHHHHHHHHHH
Q ss_conf             9999999----9999999999974
Q gi|254780604|r  378 HTDSDIE----HLVSSLENVWQKM  397 (401)
Q Consensus       378 ht~edid----~~~~~l~~v~~~l  397 (401)
T Consensus       411 H~~E~i~yaq~~ti~a~~~~f~~~  434 (434)
T TIGR00713       411 HTEEDIEYAQTNTIEAAEEVFAEL  434 (434)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             772117899999999999998409