HHsearch alignment for GI: 254780604 and conserved domain: TIGR01788

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=98.04  E-value=0.00049  Score=45.85  Aligned_cols=332  Identities=16%  Similarity=0.196  Sum_probs=188.0

Q ss_pred             EEECCCCCCCCCC------CHHHHHHHHHHHHHHCCCCCCCHHCCC-CCCHHH-HHHHH----HHHHCCCC---C-----
Q ss_conf             9811447466779------889999999999982987764100027-640289-99998----88734997---3-----
Q gi|254780604|r   48 TIWCSNDYLGMGK------HPKVIENAQRTFEKCGIGAGGTRNIAG-TNYYHV-MLEKE----LATLHGKK---A-----  107 (401)
Q Consensus        48 l~f~sndYLgL~~------~p~v~~a~~~a~~~~G~~~~~sr~~~G-~~~~~~-~LE~~----la~~~g~e---~-----  107 (401)
T Consensus        43 L~LDGNprLNLAsFV~Twme~EA~KLm~e~~~KN--------~ID~dEYPqTar~i~~RCVnM~a~LfhAp~~~D~~~~s  114 (493)
T TIGR01788        43 LSLDGNPRLNLASFVTTWMEPEAEKLMDETLNKN--------MIDKDEYPQTAREIENRCVNMLADLFHAPALKDEEAAS  114 (493)
T ss_pred             CCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCC--------CCCCCCCCHHHHHHHHCCEEHHHHHHCCCCCCCCCCCC
T ss_conf             0457762223213247877767899997255777--------01100165448988504301234411478777877566


Q ss_pred             EEEEEC-C-CCCHH-HHH----------CCCCCCCC----CEEEEHHHHHHHHHHHHHHHC--CCCEEEECC-----CCH
Q ss_conf             377405-6-52012-220----------23467788----723421321116752014531--651353167-----998
Q gi|254780604|r  108 ALIFNS-G-YIANW-ATI----------GTLCSQID----NIICFSDSHNHASIIEGINKA--RCKKVIWNH-----NDL  163 (401)
Q Consensus       108 al~~~S-G-~~An~-~~i----------~~l~~~~d----~ii~~~D~~~HaSi~~g~~l~--~a~~~~f~H-----nD~  163 (401)
T Consensus       115 avGtsTiGSSEAiMLGGlAmK~rWr~R~~~~Gk~~d~kKPNlv~-g-~~vQVCWEKF~RYfdVE~R~VP~~~r~r~~i~P  192 (493)
T TIGR01788       115 AVGTSTIGSSEAIMLGGLAMKWRWRKRMKAAGKPADAKKPNLVM-G-SNVQVCWEKFARYFDVELREVPMDKRDRYVIDP  192 (493)
T ss_pred             CEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE-C-CCCEEEECCCEEEEEEEEEEEECCCCCCCCCCH
T ss_conf             43517732589999877775799999998638887878872360-7-986164212203355401367207777601188


Q ss_pred             HHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH-----H-----CCCCEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8988867406633562362167435677336899999984-----0-----14718997121100125602589999972
Q gi|254780604|r  164 EDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLA-----D-----QYNAITYIDEVHAVGIHGSCGAGISEREG  233 (401)
Q Consensus       164 ~~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~apL~~l~~l~-----~-----~~~~~LivDEAH~~Gv~G~~G~G~~~~~g  233 (401)
T Consensus       193 e~~~~~vDENTIG---V~~ILG~-TyTG~yE~v~~lnD~L~~~~~~~PDWsg~d~PiHvDAA-SGGFi~PFGfe-kehmk  266 (493)
T TIGR01788       193 EEVVDLVDENTIG---VVAILGT-TYTGEYEDVKALNDLLEELNAKTPDWSGWDIPIHVDAA-SGGFIAPFGFE-KEHMK  266 (493)
T ss_pred             HHHHHHHCCCCCE---EEEECCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECC-CCCCCCCCCCC-CCCEE
T ss_conf             9999860767524---8887472-32587088899999999974278874778766477446-78811376635-34115


Q ss_pred             CCCC---------CCHHHCCCCCCCCC--CE-EEEEC------CHHH---HHHHHCCCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf             0200---------10110144432222--31-68754------8445---0000013322--233344443147889987
Q gi|254780604|r  234 IMNR---------ITIISGTLAKGFGT--FG-GYIAA------SENL---CDFIRSFASG--FIFSTSLPPAIASASVTS  290 (401)
Q Consensus       234 ~~~~---------~di~~~TlsKa~g~--~G-G~i~g------~~~~---~~~l~~~~~~--~ifs~~l~p~~~aa~~~a  290 (401)
T Consensus       267 ~~PDl~WDFRLprV~SINvSGHK-YGLvYPGvGWViWRd~e~LPeELiF~vnYLGg~~~tFtLNFSrp~~q-ViaQYYnF  344 (493)
T TIGR01788       267 VEPDLEWDFRLPRVKSINVSGHK-YGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQ-VIAQYYNF  344 (493)
T ss_pred             ECCCEEECCCCCCEEEECCCCCC-CCCCCCCCCEEEECCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHH
T ss_conf             45712656617824687046551-24647661268875811370131110110266565430135576231-13644668


Q ss_pred             HHHHHCC-HHHHHHHHHHHHHHHHHHHHC----C-CCCCCCC--------------------------CCEEEEEECCHH
Q ss_conf             6432012-016888899998766656644----9-8303789--------------------------865999968979
Q gi|254780604|r  291 IQYIKQH-YDERKKYLERVKQLRHSLENK----A-IPCIPNE--------------------------SHIIPIMVGDSH  338 (401)
Q Consensus       291 l~~l~~~-~~~~~~l~~~~~~l~~~L~~~----g-~~~~~~~--------------------------s~Ivpi~~g~~~  338 (401)
T Consensus       345 lRLG~~GYr~i~q~~~~vA~~La~~~~~~sklPG~Fe~~s~g~~sienDsaPksvkDYWehPqaY~~~~P~VaFrLKd~~  424 (493)
T TIGR01788       345 LRLGREGYRKIMQNLLDVAQYLAEEIAKLSKLPGPFEILSDGRESIENDSAPKSVKDYWEHPQAYKSGIPLVAFRLKDDA  424 (493)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf             85040134899998999999999999986069984588717875433456774012331364122789777988536877


Q ss_pred             H-------HHHHHHHHHHHCCEEEEEECCCCCCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9-------99999999973790998404888888---872189961857999999999999999999743
Q gi|254780604|r  339 K-------CTQISNILLKEFGIYIQPINYPTVAK---KKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN  398 (401)
Q Consensus       339 ~-------~~~~~~~lL~e~Gi~v~~i~~PtVp~---g~~rlRi~l~a~ht~edid~~~~~l~~v~~~l~  398 (401)
T Consensus       425 ~~~Y~~Yt~~~ls~~-LR~rGWiVPAYtlP~~~~GsDd~~v~RiVvRe~~~~d~A~~Li~D~~~~~~~L~  493 (493)
T TIGR01788       425 DEEYTGYTLYDLSHK-LRERGWIVPAYTLPKNAEGSDDIEVLRIVVREDFSRDLAELLIEDLEKALAYLE  493 (493)
T ss_pred             CCCCCCCCHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             888876789999998-503473134788843356778727999987258984069999999999999719