HHsearch alignment for GI: 254780604 and conserved domain: TIGR01788
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=98.04 E-value=0.00049 Score=45.85 Aligned_cols=332 Identities=16% Similarity=0.196 Sum_probs=188.0
Q ss_pred EEECCCCCCCCCC------CHHHHHHHHHHHHHHCCCCCCCHHCCC-CCCHHH-HHHHH----HHHHCCCC---C-----
Q ss_conf 9811447466779------889999999999982987764100027-640289-99998----88734997---3-----
Q gi|254780604|r 48 TIWCSNDYLGMGK------HPKVIENAQRTFEKCGIGAGGTRNIAG-TNYYHV-MLEKE----LATLHGKK---A----- 107 (401)
Q Consensus 48 l~f~sndYLgL~~------~p~v~~a~~~a~~~~G~~~~~sr~~~G-~~~~~~-~LE~~----la~~~g~e---~----- 107 (401)
T Consensus 43 L~LDGNprLNLAsFV~Twme~EA~KLm~e~~~KN--------~ID~dEYPqTar~i~~RCVnM~a~LfhAp~~~D~~~~s 114 (493)
T TIGR01788 43 LSLDGNPRLNLASFVTTWMEPEAEKLMDETLNKN--------MIDKDEYPQTAREIENRCVNMLADLFHAPALKDEEAAS 114 (493)
T ss_pred CCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCC--------CCCCCCCCHHHHHHHHCCEEHHHHHHCCCCCCCCCCCC
T ss_conf 0457762223213247877767899997255777--------01100165448988504301234411478777877566
Q ss_pred EEEEEC-C-CCCHH-HHH----------CCCCCCCC----CEEEEHHHHHHHHHHHHHHHC--CCCEEEECC-----CCH
Q ss_conf 377405-6-52012-220----------23467788----723421321116752014531--651353167-----998
Q gi|254780604|r 108 ALIFNS-G-YIANW-ATI----------GTLCSQID----NIICFSDSHNHASIIEGINKA--RCKKVIWNH-----NDL 163 (401)
Q Consensus 108 al~~~S-G-~~An~-~~i----------~~l~~~~d----~ii~~~D~~~HaSi~~g~~l~--~a~~~~f~H-----nD~ 163 (401)
T Consensus 115 avGtsTiGSSEAiMLGGlAmK~rWr~R~~~~Gk~~d~kKPNlv~-g-~~vQVCWEKF~RYfdVE~R~VP~~~r~r~~i~P 192 (493)
T TIGR01788 115 AVGTSTIGSSEAIMLGGLAMKWRWRKRMKAAGKPADAKKPNLVM-G-SNVQVCWEKFARYFDVELREVPMDKRDRYVIDP 192 (493)
T ss_pred CEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE-C-CCCEEEECCCEEEEEEEEEEEECCCCCCCCCCH
T ss_conf 43517732589999877775799999998638887878872360-7-986164212203355401367207777601188
Q ss_pred HHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH-----H-----CCCCEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8988867406633562362167435677336899999984-----0-----14718997121100125602589999972
Q gi|254780604|r 164 EDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLA-----D-----QYNAITYIDEVHAVGIHGSCGAGISEREG 233 (401)
Q Consensus 164 ~~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~apL~~l~~l~-----~-----~~~~~LivDEAH~~Gv~G~~G~G~~~~~g 233 (401)
T Consensus 193 e~~~~~vDENTIG---V~~ILG~-TyTG~yE~v~~lnD~L~~~~~~~PDWsg~d~PiHvDAA-SGGFi~PFGfe-kehmk 266 (493)
T TIGR01788 193 EEVVDLVDENTIG---VVAILGT-TYTGEYEDVKALNDLLEELNAKTPDWSGWDIPIHVDAA-SGGFIAPFGFE-KEHMK 266 (493)
T ss_pred HHHHHHHCCCCCE---EEEECCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECC-CCCCCCCCCCC-CCCEE
T ss_conf 9999860767524---8887472-32587088899999999974278874778766477446-78811376635-34115
Q ss_pred CCCC---------CCHHHCCCCCCCCC--CE-EEEEC------CHHH---HHHHHCCCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf 0200---------10110144432222--31-68754------8445---0000013322--233344443147889987
Q gi|254780604|r 234 IMNR---------ITIISGTLAKGFGT--FG-GYIAA------SENL---CDFIRSFASG--FIFSTSLPPAIASASVTS 290 (401)
Q Consensus 234 ~~~~---------~di~~~TlsKa~g~--~G-G~i~g------~~~~---~~~l~~~~~~--~ifs~~l~p~~~aa~~~a 290 (401)
T Consensus 267 ~~PDl~WDFRLprV~SINvSGHK-YGLvYPGvGWViWRd~e~LPeELiF~vnYLGg~~~tFtLNFSrp~~q-ViaQYYnF 344 (493)
T TIGR01788 267 VEPDLEWDFRLPRVKSINVSGHK-YGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQ-VIAQYYNF 344 (493)
T ss_pred ECCCEEECCCCCCEEEECCCCCC-CCCCCCCCCEEEECCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHH
T ss_conf 45712656617824687046551-24647661268875811370131110110266565430135576231-13644668
Q ss_pred HHHHHCC-HHHHHHHHHHHHHHHHHHHHC----C-CCCCCCC--------------------------CCEEEEEECCHH
Q ss_conf 6432012-016888899998766656644----9-8303789--------------------------865999968979
Q gi|254780604|r 291 IQYIKQH-YDERKKYLERVKQLRHSLENK----A-IPCIPNE--------------------------SHIIPIMVGDSH 338 (401)
Q Consensus 291 l~~l~~~-~~~~~~l~~~~~~l~~~L~~~----g-~~~~~~~--------------------------s~Ivpi~~g~~~ 338 (401)
T Consensus 345 lRLG~~GYr~i~q~~~~vA~~La~~~~~~sklPG~Fe~~s~g~~sienDsaPksvkDYWehPqaY~~~~P~VaFrLKd~~ 424 (493)
T TIGR01788 345 LRLGREGYRKIMQNLLDVAQYLAEEIAKLSKLPGPFEILSDGRESIENDSAPKSVKDYWEHPQAYKSGIPLVAFRLKDDA 424 (493)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf 85040134899998999999999999986069984588717875433456774012331364122789777988536877
Q ss_pred H-------HHHHHHHHHHHCCEEEEEECCCCCCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-------99999999973790998404888888---872189961857999999999999999999743
Q gi|254780604|r 339 K-------CTQISNILLKEFGIYIQPINYPTVAK---KKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN 398 (401)
Q Consensus 339 ~-------~~~~~~~lL~e~Gi~v~~i~~PtVp~---g~~rlRi~l~a~ht~edid~~~~~l~~v~~~l~ 398 (401)
T Consensus 425 ~~~Y~~Yt~~~ls~~-LR~rGWiVPAYtlP~~~~GsDd~~v~RiVvRe~~~~d~A~~Li~D~~~~~~~L~ 493 (493)
T TIGR01788 425 DEEYTGYTLYDLSHK-LRERGWIVPAYTLPKNAEGSDDIEVLRIVVREDFSRDLAELLIEDLEKALAYLE 493 (493)
T ss_pred CCCCCCCCHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 888876789999998-503473134788843356778727999987258984069999999999999719