HHsearch alignment for GI: 254780604 and conserved domain: TIGR01976
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein; InterPro: IPR011340 This entry describes probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. The most closely related characterised proteins are active as cysteine desulphurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown..
Probab=99.64 E-value=5.6e-13 Score=103.39 Aligned_cols=327 Identities=15% Similarity=0.214 Sum_probs=215.1
Q ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCC--CCHHHHHHHHHHHHCCCCC--EEEEECCCCCH
Q ss_conf 9868998114474667798899999999999829877641000276--4028999998887349973--37740565201
Q gi|254780604|r 43 GSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGT--NYYHVMLEKELATLHGKKA--ALIFNSGYIAN 118 (401)
Q Consensus 43 ~~~~~l~f~sndYLgL~~~p~v~~a~~~a~~~~G~~~~~sr~~~G~--~~~~~~LE~~la~~~g~e~--al~~~SG~~An 118 (401)
T Consensus 18 ~~~~~~~~Dnp--AG~q~Pq~V~dAv~~~L~~~~A~~gg~~~~~G~~~~~~vd~AR~a~A~LlnA~~Pe~vv~G----~~ 91 (410)
T TIGR01976 18 KDKDVVFFDNP--AGTQIPQSVLDAVSAALTRSNANRGGAYESSGRKADQVVDDAREAVADLLNAESPEEVVFG----AN 91 (410)
T ss_pred CCCCEEEEECC--CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEC----CC
T ss_conf 89736897578--8887773479999999874130137677663068999999999999997267988856767----86
Q ss_pred HH--------HHCCCCCCCCCEEEEH-HHHHHHHHHH-HHHHCCCCEEEECC------CCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 22--------2023467788723421-3211167520-14531651353167------9988988867406633562362
Q gi|254780604|r 119 WA--------TIGTLCSQIDNIICFS-DSHNHASIIE-GINKARCKKVIWNH------NDLEDLEKNLAATDLSIPKIII 182 (401)
Q Consensus 119 ~~--------~i~~l~~~~d~ii~~~-D~~~HaSi~~-g~~l~~a~~~~f~H------nD~~~Le~~L~~~~~~~~~iIv 182 (401)
T Consensus 92 ~T~L~~~ls~a~~~~~~~GDEvivt~LDHeaNispW~~~a~~~Ga~Vkw~~~d~~~~~L~~~~L~~Lls----~rTRLVA 167 (410)
T TIGR01976 92 ATSLAYLLSRALSRRWGPGDEVIVTRLDHEANISPWLQAAEDAGAKVKWARVDEADGELHPDDLASLLS----PRTRLVA 167 (410)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCC----CCHHHHH
T ss_conf 689999999998512689855897167660013689999983897899963362315448699823668----8225556
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCC-CCCHHHCCCCCCCCCCEEEEECCHH
Q ss_conf 167435677336899999984014718997121100125602589999972020-0101101444322223168754844
Q gi|254780604|r 183 FESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMN-RITIISGTLAKGFGTFGGYIAASEN 261 (401)
Q Consensus 183 ~e~v~Sm~G~~apL~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~-~~di~~~TlsKa~g~~GG~i~g~~~ 261 (401)
T Consensus 168 vt~ASn~~Gs~~dl~A~~~~vh~aGA~v~VDaVh----yaPH~L-----~Dvqa~gaD~l~cSaYK~fGPH~G~l~~R~~ 238 (410)
T TIGR01976 168 VTAASNLLGSIVDLAALTELVHAAGALVYVDAVH----YAPHGL-----IDVQALGADFLVCSAYKFFGPHLGILWGRPE 238 (410)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCEEEECHHH----HCCCCC-----CCHHHHCCCEEEECCEECCCCCEEEEEECHH
T ss_conf 2344023255115889999998759879881110----045666-----4134227887998563116885017871146
Q ss_pred HHHHHHCC-------CCCCCC-CCCCCCHHHHHHHHHHHHHHCCH---------HHHHHH-----------HHHHHHHHH
Q ss_conf 50000013-------322233-34444314788998764320120---------168888-----------999987666
Q gi|254780604|r 262 LCDFIRSF-------ASGFIF-STSLPPAIASASVTSIQYIKQHY---------DERKKY-----------LERVKQLRH 313 (401)
Q Consensus 262 ~~~~l~~~-------~~~~if-s~~l~p~~~aa~~~al~~l~~~~---------~~~~~l-----------~~~~~~l~~ 313 (401)
T Consensus 239 ~~~~l~~~k~~~~~d~~P~r~E~GT~~yEllAG~~AavdYLa~lg~nlA~~~~gsrR~~lv~sf~~~~ayE~~l~~~Ll~ 318 (410)
T TIGR01976 239 LLKSLPPYKLEFSEDTGPERFELGTLQYELLAGVVAAVDYLAGLGRNLAASANGSRRERLVASFEAIEAYENRLAERLLA 318 (410)
T ss_pred HHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64046876336778888851451455602678999999999982321068988655899999999999999999999999
Q ss_pred HHHHCCCC-CC--------CCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCC--------CCCCCCEEEEECCC
Q ss_conf 56644983-03--------789865999968979999999999973790998404888--------88887218996185
Q gi|254780604|r 314 SLENKAIP-CI--------PNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPT--------VAKKKERLRVTLTP 376 (401)
Q Consensus 314 ~L~~~g~~-~~--------~~~s~Ivpi~~g~~~~~~~~~~~lL~e~Gi~v~~i~~Pt--------Vp~g~~rlRi~l~a 376 (401)
T Consensus 319 ~L~~~P~~t~yG~~d~~R~~~RvPTv~F~v~~~~-P~~~~~~-La~~~v~~~~GHfYA~~~~~~LGl~~~~GvvR~gLaH 396 (410)
T TIGR01976 319 GLSDLPGVTVYGVQDEKRLAERVPTVAFTVAGLS-PQRVVRR-LADQGVDVWAGHFYAVRLLRRLGLEADGGVVRVGLAH 396 (410)
T ss_pred HHHHCCCEEEECHHHHHHHHHCCCEEEEEECCCC-HHHHHHH-HHHCCCEEECCCCHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 9874895699735578646425975889727878-7999999-8536863312641168999865898988738985257
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 79999999999999
Q gi|254780604|r 377 LHTDSDIEHLVSSL 390 (401)
Q Consensus 377 ~ht~edid~~~~~l 390 (401)
T Consensus 397 Y~t~eevd~l~~aL 410 (410)
T TIGR01976 397 YNTAEEVDRLLEAL 410 (410)
T ss_pred CCCHHHHHHHHHCC
T ss_conf 79889999998509