HHsearch alignment for GI: 254780604 and conserved domain: TIGR03235
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.74 E-value=1.1e-15 Score=120.86 Aligned_cols=281 Identities=16% Similarity=0.170 Sum_probs=179.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCC-H-HCCCCCCHHHHHHHHHHHHCCCC-CEEEE-ECCCCCHHHHHCCCC----CCCCC
Q ss_conf 98899999999999829877641-0-00276402899999888734997-33774-056520122202346----77887
Q gi|254780604|r 60 KHPKVIENAQRTFEKCGIGAGGT-R-NIAGTNYYHVMLEKELATLHGKK-AALIF-NSGYIANWATIGTLC----SQIDN 131 (401)
Q Consensus 60 ~~p~v~~a~~~a~~~~G~~~~~s-r-~~~G~~~~~~~LE~~la~~~g~e-~al~~-~SG~~An~~~i~~l~----~~~d~ 131 (401)
T Consensus 10 ~~~~v~~~~~~~~~~~~~Np~s~~h~~g~~a~~~le~aR~~ia~~lga~~~eiiFTsg~Tes~nl~i~g~~~~~~~~g~~ 89 (354)
T TIGR03235 10 VDPEVAEVMLPFLLEEFGNPGSRTHEHGHNAKKAVERARKQVAEALGAQTKEVIFTSGATESNNIAILGLARAHENKGKH 89 (354)
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999998668797303128999999999999999999809996778996883799999999999850269999
Q ss_pred EEEEHHHHHHHHHHHHHHH---CCCCEEEEC-----CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2342132111675201453---165135316-----79988988867406633562362167435677336899999984
Q gi|254780604|r 132 IICFSDSHNHASIIEGINK---ARCKKVIWN-----HNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLA 203 (401)
Q Consensus 132 ii~~~D~~~HaSi~~g~~l---~~a~~~~f~-----HnD~~~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~apL~~l~~l~ 203 (401)
T Consensus 90 ii~--s~~EH~svl~~~~~l~~~G~~v~~~~vd~~G~id~~~l~~~l~~----~t~lvsi~~~nnetG~i~pi~~i~~~~ 163 (354)
T TIGR03235 90 IIT--TAIEHPAILEPARALERNGFTVTYLEVDESGRVSVEELADAIRD----DTLLVSIMHVNNETGSLQPIREIAELC 163 (354)
T ss_pred EEE--CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCC----CCEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 998--10030447999999996496899955578982877999987268----977999988756667638899998865
Q ss_pred HCCCCEEEECCCCCCCCCCCHHHHHHHHHHCC-CCCCHHHCCCCCCCCCCE-EEEECCHHHHHHHH----CCCCCC---C
Q ss_conf 01471899712110012560258999997202-001011014443222231-68754844500000----133222---3
Q gi|254780604|r 204 DQYNAITYIDEVHAVGIHGSCGAGISEREGIM-NRITIISGTLAKGFGTFG-GYIAASENLCDFIR----SFASGF---I 274 (401)
Q Consensus 204 ~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~-~~~di~~~TlsKa~g~~G-G~i~g~~~~~~~l~----~~~~~~---i 274 (401)
T Consensus 164 ~~~g~~~~vDa~Q~~g~~~---------id~~~~~~D~~s~S~HK~~GP~GiG~L~vr~~~~~~~~l~Pl~~GGgqe~g~ 234 (354)
T TIGR03235 164 EAREVFFHSDAAQVVGKIT---------VDLERDHIDLISLSGHKAYGPKGIGALYIRKRGKPKAPLAPIMFGGGQERGL 234 (354)
T ss_pred HCCCCEEEEECHHCCCCCC---------CCHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCC
T ss_conf 2256415625001158755---------5778849973763100034887149999804667666646403689886874
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHC--CCCCCCC---C-CCEEEEEECCHHHHHHHHHHH
Q ss_conf 33444431478899876432012-016888899998766656644--9830378---9-865999968979999999999
Q gi|254780604|r 275 FSTSLPPAIASASVTSIQYIKQH-YDERKKYLERVKQLRHSLENK--AIPCIPN---E-SHIIPIMVGDSHKCTQISNIL 347 (401)
Q Consensus 275 fs~~l~p~~~aa~~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~--g~~~~~~---~-s~Ivpi~~g~~~~~~~~~~~l 347 (401)
T Consensus 235 r~GT~nv~~i~g~~~A~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~v~i~g~~~~r~p~i~s~~~~gi~-~~~l~~~- 312 (354)
T TIGR03235 235 RPGTLPVPLIVGMGEAAEIARRNAQAWGVRLRAMCNLLRDALQTSLPGVKLNGDPAETLPNILSFSFEGVN-PEALIRN- 312 (354)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCC-HHHHHHH-
T ss_conf 68996599999999999999982899999999999999999974599659658822475888999979969-9999998-
Q ss_pred HHHCCEEEEEE
Q ss_conf 97379099840
Q gi|254780604|r 348 LKEFGIYIQPI 358 (401)
Q Consensus 348 L~e~Gi~v~~i 358 (401)
T Consensus 313 L~-~~iavstG 322 (354)
T TIGR03235 313 LK-ADAAVSTG 322 (354)
T ss_pred HC-CCCEEEHH
T ss_conf 63-99899822