>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

Probab=100.00 E-value=3.6e-32 Score=226.80 Aligned_cols=348 Identities=18% Similarity=0.211 Sum_probs=240.0 Q ss_pred CCCCEEECCCCCCCCCCCCEEEECCCCEEEEEECCCCC-CCCC-CCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHH Q ss_conf 99753500134555576310231479868998114474-6677-988999999999998298776410002764028999 Q gi|254780604|r 18 KRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDY-LGMG-KHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVML 95 (401) Q Consensus 18 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~sndY-LgL~-~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~L 95 (401) T Consensus 12 ~~y~~~-P~vi~ra~---G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~-~~-~-~~--~~~~~~~l 82 (397) T TIGR03246 12 PNYAPA-PFIPVRGE---GSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH-IG-N-GY--TNEPVLRL 82 (397) T ss_pred CCCCCC-CCEEEEEE---CCEEEECCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC-CC-C-CC--CCHHHHHH T ss_conf 669999-84289836---49999698799999463487665578988999999999965777-76-8-63--48899999 Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHCCCC-------CCC-CCEEEEHHHHHHHHHHHHHHHCCC------------CE Q ss_conf 9988873499733774056520122202346-------778-872342132111675201453165------------13 Q gi|254780604|r 96 EKELATLHGKKAALIFNSGYIANWATIGTLC-------SQI-DNIICFSDSHNHASIIEGINKARC------------KK 155 (401) Q Consensus 96 E~~la~~~g~e~al~~~SG~~An~~~i~~l~-------~~~-d~ii~~~D~~~HaSi~~g~~l~~a------------~~ 155 (401) T Consensus 83 a~~L~~~~~~~~v~f~~sGsEA~e~AlklAr~~~~~~~~~~k~~iis~-~~~yHG~t~~~~s~~~~~~~~~~~~p~~~~~ 161 (397) T TIGR03246 83 AKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAF-KNSFHGRTLFTVSVGGQPKYSQGFAPLPGGI 161 (397) T ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 999975148776997286778999999999999985179997689997-2786898564104689965567888999764 Q ss_pred EEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHH----HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH-H Q ss_conf 5316799889888674066335623621674356773368----9999998401471899712110012560258999-9 Q gi|254780604|r 156 VIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAP----IKEICDLADQYNAITYIDEVHAVGIHGSCGAGIS-E 230 (401) Q Consensus 156 ~~f~HnD~~~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~ap----L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~-~ 230 (401) T Consensus 162 ~~~~~~d~~~~~~~~~~---~-iaAvi~EPv~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~-tG-fGRtG~~~a~~ 235 (397) T TIGR03246 162 KHAPYNDLAAAKALISD---K-TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TG-VGRTGELYAYM 235 (397) T ss_pred EECCCCCHHHHHHHHCC---C-EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE-EC-CCCCCCCCHHH T ss_conf 20452339999985288---7-3799993877888987388899999999999859358634122-07-87777831432 Q ss_pred HHHCCCCCCHHHCCCCCCCCCCE---EEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 97202001011014443222231---687548445000001332223334444314788998764320120168888999 Q gi|254780604|r 231 REGIMNRITIISGTLAKGFGTFG---GYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLER 307 (401) Q Consensus 231 ~~g~~~~~di~~~TlsKa~g~~G---G~i~g~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~~~~~~~l~~~ 307 (401) T Consensus 236 ~~gv~PD--iv--~~gK~l~g-G~P~sav~~~~~i~~~~~~~~h~~T~--~gnpl~~aaala~L~~i~~-e~l~~~~~~~ 307 (397) T TIGR03246 236 HYGVTPD--IL--TSAKALGG-GFPIGAMLTTTEIAAHLKVGTHGTTY--GGNPLACAVAGKVLDLVNT-PELLAGVKQR 307 (397) T ss_pred CCCCCCC--EE--EECCCCCC-CCEEEEEEECHHHHHHCCCCCCCCCC--CCCHHHHHHHHHHHHHHHH-CCHHHHHHHH T ss_conf 2698998--78--87422468-84048997448888651877738668--8299999999999999985-4799999999 Q ss_pred HHHHHHHHHHCC--CCC---CCCCCCEEEEEECC--HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCH Q ss_conf 987666566449--830---37898659999689--79999999999973790998404888888872189961857999 Q gi|254780604|r 308 VKQLRHSLENKA--IPC---IPNESHIIPIMVGD--SHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTD 380 (401) Q Consensus 308 ~~~l~~~L~~~g--~~~---~~~~s~Ivpi~~g~--~~~~~~~~~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~l~a~ht~ 380 (401) T Consensus 308 g~~l~~~L~~l~~~~~~i~~VRG~Glm~giel~~~~~~~a~~i~~~~~-~~Gll~~~~-------g~n~lrl~PPL~it~ 379 (397) T TIGR03246 308 HDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAA-EEGVIALIA-------GPNVVRFAPSLVISD 379 (397) T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEC-------CCCEEEEECCCCCCH T ss_conf 999999999987417987754224359999972786335999999999-789289307-------999799978851899 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999974 Q gi|254780604|r 381 SDIEHLVSSLENVWQKM 397 (401) Q Consensus 381 edid~~~~~l~~v~~~l 397 (401) T Consensus 380 eeid~~l~~l~~al~~v 396 (397) T TIGR03246 380 DDIDEGLARFERAIEQV 396 (397) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999986

HHsearch alignment for GI: 254780604 and conserved domain: TIGR03246