>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

Probab=99.92 E-value=5.4e-22 Score=161.37 Aligned_cols=332 Identities=14% Similarity=0.132 Sum_probs=199.2 Q ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHC----CC------CCEEEEE Q ss_conf 9868998114474667798899999999999829877641000276402899999888734----99------7337740 Q gi|254780604|r 43 GSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLH----GK------KAALIFN 112 (401) Q Consensus 43 ~~~~~l~f~sndYLgL~~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~----g~------e~al~~~ 112 (401) T Consensus 27 ~g~~iI~L~iG~-Pd~~~P~~v~ea~~~al~--~~~------~Y~~~~G~~~LReAia~~~~~~~~~~~~~dp~~~I~vt 97 (394) T TIGR03538 27 ASLPPIALSIGE-PKHATPAFVLEALRENLH--GLS------TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPV 97 (394) T ss_pred CCCCEEECCCCC-CCCCCCHHHHHHHHHHHC--CCC------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC T ss_conf 899878784888-999977999999999843--888------99999886999999999999973988778967769989 Q ss_pred CCC-CCHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEC-------CCCHHHHHHHHHHCCCCCCCEEECC Q ss_conf 565-20122202346778872342132111675201453165135316-------7998898886740663356236216 Q gi|254780604|r 113 SGY-IANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWN-------HNDLEDLEKNLAATDLSIPKIIIFE 184 (401) Q Consensus 113 SG~-~An~~~i~~l~~~~d~ii~~~D~~~HaSi~~g~~l~~a~~~~f~-------HnD~~~Le~~L~~~~~~~~~iIv~e 184 (401) T Consensus 98 ~Ga~~al~~~~~~l~~pGd~~~V~~p~P~Y~~y~~~~~~~g~~~~~v~~~~e~~~~~d~~~l~~~~~---~~tk~iil~s 174 (394) T TIGR03538 98 NGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVW---RRCQLLFVCS 174 (394) T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCC---CCCEEEEECC T ss_conf 8889999999999729998108994788664529999975998997586734588889999987452---3665999889 Q ss_pred CCCCCCCCH---HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHH--HHH---HHHHCC-CCCCHHHCCCCCCCCCCE-- Q ss_conf 743567733---689999998401471899712110012560258--999---997202-001011014443222231-- Q gi|254780604|r 185 SIYSMDGDI---APIKEICDLADQYNAITYIDEVHAVGIHGSCGA--GIS---EREGIM-NRITIISGTLAKGFGTFG-- 253 (401) Q Consensus 185 ~v~Sm~G~~---apL~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~--G~~---~~~g~~-~~~di~~~TlsKa~g~~G-- 253 (401) T Consensus 175 P-~NPTG~v~s~~~l~~l~~~a~~~~i~iisDE~Y~~l~~d~~~~p~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 253 (394) T TIGR03538 175 P-GNPTGAVLSLETLKKLIELADQYGFIIASDECYSELYFDEANPPAGLLQAAAALGRDDFRRCLVFHSLSKRSNLPGLR 253 (394) T ss_pred C-CCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCE T ss_conf 9-999897778799999999973267699980683327857888973787777662544447679995565444546751 Q ss_pred -EEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE Q ss_conf -6875484450000013322233344443147889987643201201688889999876665664498303789865999 Q gi|254780604|r 254 -GYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPI 332 (401) Q Consensus 254 -G~i~g~~~~~~~l~~~~~~~ifs~~l~p~~~aa~~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~g~~~~~~~s~Ivpi 332 (401) T Consensus 254 iG~~~~~~~~i~~~~~~~-~~~~~-~~~~~~q~a~~aa~~~~~~~~~~r~~~~~r~~~~~~~L~~~-~~~~~P~Gg~-y~ 329 (394) T TIGR03538 254 SGFVAGDAEILKAFLRYR-TYHGC-AMPPPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGPV-LDLELPDAGF-YL 329 (394) T ss_pred EEEEECCHHHHHHHHHHC-CCCCC-CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCEEE-EE T ss_conf 799957999999999852-23742-68999999999984898999999999999999999986427-9625798548-99 Q ss_pred EECCHHHHHHHHHHHHHHCCEEEEEECCCC-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 968979999999999973790998404888-----8888721899618579999999999999999 Q gi|254780604|r 333 MVGDSHKCTQISNILLKEFGIYIQPINYPT-----VAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393 (401) Q Consensus 333 ~~g~~~~~~~~~~~lL~e~Gi~v~~i~~Pt-----Vp~g~~rlRi~l~a~ht~edid~~~~~l~~v 393 (401) T Consensus 330 w~~~~~~~~~f~~~ll~e~gV~v~PG~~F~~~~~~~~~G~g~iR~s~~~--~~e~l~ea~~Rl~~f 393 (394) T TIGR03538 330 WPKVPGDDEAFARALYEEENVTVLPGRYLSREAEGVNPGAGRVRIALVA--PLEECVEAAERIRRF 393 (394) T ss_pred EEECCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHH T ss_conf 9968999999999999868999987734165545788899989999759--899999999999986

HHsearch alignment for GI: 254780604 and conserved domain: TIGR03538