HHsearch alignment for GI: 254780604 and conserved domain: TIGR03588

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.86  E-value=2.2e-19  Score=144.55  Aligned_cols=308  Identities=19%  Similarity=0.189  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCC-CCCCCCEEEEHHHHHH
Q ss_conf             999999999998298776410002764028999998887349973377405652012220234-6778872342132111
Q gi|254780604|r   63 KVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTL-CSQIDNIICFSDSHNH  141 (401)
Q Consensus        63 ~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~g~e~al~~~SG~~An~~~i~~l-~~~~d~ii~~~D~~~H  141 (401)
T Consensus        11 ~e~~~v~~~l~s-~~------~~--~G~~v~~fE~~~~~~~g~k~~v~~~sgT~AL~lal~al~~~~gdeVivp~--~tf   79 (380)
T TIGR03588        11 DDIDAVVEVLKS-DF------LT--QGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDEVWTTP--ITF   79 (380)
T ss_pred             HHHHHHHHHHHC-CC------CC--CCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECC--CCC
T ss_conf             999999999847-98------66--89769999999999978594999758899999999984999989999678--530


Q ss_pred             HHHHHHHHHCCCCEEEEC------CCCHHHHHHHHHHCCCC-CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             675201453165135316------79988988867406633-56236216743567733689999998401471899712
Q gi|254780604|r  142 ASIIEGINKARCKKVIWN------HNDLEDLEKNLAATDLS-IPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDE  214 (401)
Q Consensus       142 aSi~~g~~l~~a~~~~f~------HnD~~~Le~~L~~~~~~-~~~iIv~e~v~Sm~G~~apL~~l~~l~~~~~~~LivDE  214 (401)
T Consensus        80 ~at~~ai~~~Ga~pvf~Dvd~~t~~id~~~l~~~it~~~~~ktkaIi~v-h---~~G~~~d~~~i~~ia~~~~i~lIEDa  155 (380)
T TIGR03588        80 VATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPV-D---FAGKSVDMQAIAALAKKHGLKIIEDA  155 (380)
T ss_pred             HHHHHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHHCCCCCCEEEEEE-C---CCCEECCHHHHHHHHHHCCCEEEEEC
T ss_conf             8867999987996899844100014898887777764367772599994-8---98543489999999998698899988


Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCHHHCCC--CCCCCC-CEEEEECC-HHHHHHH---HCCCCC-------------C-
Q ss_conf             1100125602589999972020010110144--432222-31687548-4450000---013322-------------2-
Q gi|254780604|r  215 VHAVGIHGSCGAGISEREGIMNRITIISGTL--AKGFGT-FGGYIAAS-ENLCDFI---RSFASG-------------F-  273 (401)
Q Consensus       215 AH~~Gv~G~~G~G~~~~~g~~~~~di~~~Tl--sKa~g~-~GG~i~g~-~~~~~~l---~~~~~~-------------~-  273 (401)
T Consensus       156 A~a~Ga~~-~gk~----~Gs~~~gd~~~fSF~~~K~ittGeGG~i~tnd~~l~~~~r~lr~~G~~~~~~~~~~~~~~~~~  230 (380)
T TIGR03588       156 SHALGAEY-GGKP----VGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWY  230 (380)
T ss_pred             CCHHCCCC-CCCC----CCCCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCE
T ss_conf             00115775-7876----566443524677335555577788539996999999999999976967773100146788740


Q ss_pred             ------CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC---CCC----CCEEEEEECCHH--
Q ss_conf             ------33344443147889987643201201688889999876665664498303---789----865999968979--
Q gi|254780604|r  274 ------IFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCI---PNE----SHIIPIMVGDSH--  338 (401)
Q Consensus       274 ------ifs~~l~p~~~aa~~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~g~~~~---~~~----s~Ivpi~~g~~~--  338 (401)
T Consensus       231 y~~~~~G~N~rmseiqAAig~~qL~~ld~~~~---~R~~ia~~Y~~~L~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~  307 (380)
T TIGR03588       231 YEQQELGFNYRMTDIQAALGLSQLKKLDRFVA---KRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGC  307 (380)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
T ss_conf             36634766654312414876888888999999---999999999996478998356746999831568999998266731


Q ss_pred             HHHHHHHHHHHHCCEEEEEECCCCC--C-------CC---------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999999737909984048888--8-------88---------7218996185799999999999999999
Q gi|254780604|r  339 KCTQISNILLKEFGIYIQPINYPTV--A-------KK---------KERLRVTLTPLHTDSDIEHLVSSLENVW  394 (401)
Q Consensus       339 ~~~~~~~~lL~e~Gi~v~~i~~PtV--p-------~g---------~~rlRi~l~a~ht~edid~~~~~l~~v~  394 (401)
T Consensus       308 ~r~~l~~~-L~~~gI~t~~~y~Plh~~p~~~~~~~~~~~p~ae~~~~~~l~LP~~~~Lt~~di~~I~~~Ik~vL  380 (380)
T TIGR03588       308 TRKEVFEA-LRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             CHHHHHHH-HHHCCCCEEEECCCHHCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             49999999-99779985672304422998882788799879999984979897999989999999999999869