HHsearch alignment for GI: 254780604 and conserved domain: TIGR03588
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.86 E-value=2.2e-19 Score=144.55 Aligned_cols=308 Identities=19% Similarity=0.189 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCC-CCCCCCEEEEHHHHHH
Q ss_conf 999999999998298776410002764028999998887349973377405652012220234-6778872342132111
Q gi|254780604|r 63 KVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTL-CSQIDNIICFSDSHNH 141 (401)
Q Consensus 63 ~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~g~e~al~~~SG~~An~~~i~~l-~~~~d~ii~~~D~~~H 141 (401)
T Consensus 11 ~e~~~v~~~l~s-~~------~~--~G~~v~~fE~~~~~~~g~k~~v~~~sgT~AL~lal~al~~~~gdeVivp~--~tf 79 (380)
T TIGR03588 11 DDIDAVVEVLKS-DF------LT--QGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDEVWTTP--ITF 79 (380)
T ss_pred HHHHHHHHHHHC-CC------CC--CCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECC--CCC
T ss_conf 999999999847-98------66--89769999999999978594999758899999999984999989999678--530
Q ss_pred HHHHHHHHHCCCCEEEEC------CCCHHHHHHHHHHCCCC-CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 675201453165135316------79988988867406633-56236216743567733689999998401471899712
Q gi|254780604|r 142 ASIIEGINKARCKKVIWN------HNDLEDLEKNLAATDLS-IPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDE 214 (401)
Q Consensus 142 aSi~~g~~l~~a~~~~f~------HnD~~~Le~~L~~~~~~-~~~iIv~e~v~Sm~G~~apL~~l~~l~~~~~~~LivDE 214 (401)
T Consensus 80 ~at~~ai~~~Ga~pvf~Dvd~~t~~id~~~l~~~it~~~~~ktkaIi~v-h---~~G~~~d~~~i~~ia~~~~i~lIEDa 155 (380)
T TIGR03588 80 VATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPV-D---FAGKSVDMQAIAALAKKHGLKIIEDA 155 (380)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHHCCCCCCEEEEEE-C---CCCEECCHHHHHHHHHHCCCEEEEEC
T ss_conf 8867999987996899844100014898887777764367772599994-8---98543489999999998698899988
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHCCC--CCCCCC-CEEEEECC-HHHHHHH---HCCCCC-------------C-
Q ss_conf 1100125602589999972020010110144--432222-31687548-4450000---013322-------------2-
Q gi|254780604|r 215 VHAVGIHGSCGAGISEREGIMNRITIISGTL--AKGFGT-FGGYIAAS-ENLCDFI---RSFASG-------------F- 273 (401)
Q Consensus 215 AH~~Gv~G~~G~G~~~~~g~~~~~di~~~Tl--sKa~g~-~GG~i~g~-~~~~~~l---~~~~~~-------------~- 273 (401)
T Consensus 156 A~a~Ga~~-~gk~----~Gs~~~gd~~~fSF~~~K~ittGeGG~i~tnd~~l~~~~r~lr~~G~~~~~~~~~~~~~~~~~ 230 (380)
T TIGR03588 156 SHALGAEY-GGKP----VGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWY 230 (380)
T ss_pred CCHHCCCC-CCCC----CCCCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCE
T ss_conf 00115775-7876----566443524677335555577788539996999999999999976967773100146788740
Q ss_pred ------CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC---CCC----CCEEEEEECCHH--
Q ss_conf ------33344443147889987643201201688889999876665664498303---789----865999968979--
Q gi|254780604|r 274 ------IFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCI---PNE----SHIIPIMVGDSH-- 338 (401)
Q Consensus 274 ------ifs~~l~p~~~aa~~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~g~~~~---~~~----s~Ivpi~~g~~~-- 338 (401)
T Consensus 231 y~~~~~G~N~rmseiqAAig~~qL~~ld~~~~---~R~~ia~~Y~~~L~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~ 307 (380)
T TIGR03588 231 YEQQELGFNYRMTDIQAALGLSQLKKLDRFVA---KRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGC 307 (380)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
T ss_conf 36634766654312414876888888999999---999999999996478998356746999831568999998266731
Q ss_pred HHHHHHHHHHHHCCEEEEEECCCCC--C-------CC---------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999999737909984048888--8-------88---------7218996185799999999999999999
Q gi|254780604|r 339 KCTQISNILLKEFGIYIQPINYPTV--A-------KK---------KERLRVTLTPLHTDSDIEHLVSSLENVW 394 (401)
Q Consensus 339 ~~~~~~~~lL~e~Gi~v~~i~~PtV--p-------~g---------~~rlRi~l~a~ht~edid~~~~~l~~v~ 394 (401)
T Consensus 308 ~r~~l~~~-L~~~gI~t~~~y~Plh~~p~~~~~~~~~~~p~ae~~~~~~l~LP~~~~Lt~~di~~I~~~Ik~vL 380 (380)
T TIGR03588 308 TRKEVFEA-LRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred CHHHHHHH-HHHCCCCEEEECCCHHCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 49999999-99779985672304422998882788799879999984979897999989999999999999869