HHsearch alignment for GI: 254780604 and conserved domain: cd00609

>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.90  E-value=1.7e-21  Score=158.17  Aligned_cols=327  Identities=15%  Similarity=0.132  Sum_probs=195.7

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHCC--------CCCEEEEECCCCCHHH
Q ss_conf             81144746677988999999999998298776410002764028999998887349--------9733774056520122
Q gi|254780604|r   49 IWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG--------KKAALIFNSGYIANWA  120 (401)
Q Consensus        49 ~f~sndYLgL~~~p~v~~a~~~a~~~~G~~~~~sr~~~G~~~~~~~LE~~la~~~g--------~e~al~~~SG~~An~~  120 (401)
T Consensus         2 ~l~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~y~~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~al~~   74 (350)
T cd00609           2 DLSIGEP-DFPPPPEVLEALAAAALRA------GLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSL   74 (350)
T ss_pred             CCCCCCC-CCCCCHHHHHHHHHHHHCC------CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEECCHHHHHHH
T ss_conf             5858689-9987999999999997474------67587999881999999999987873899747978992699999999


Q ss_pred             HHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEECC----CCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHH-
Q ss_conf             2023467788723421321116752014531651353167----99889888674066335623621674356773368-
Q gi|254780604|r  121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNH----NDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAP-  195 (401)
Q Consensus       121 ~i~~l~~~~d~ii~~~D~~~HaSi~~g~~l~~a~~~~f~H----nD~~~Le~~L~~~~~~~~~iIv~e~v~Sm~G~~ap-  195 (401)
T Consensus        75 ~~~~l~~~gd~vlv~--~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~P-~NPtG~~~~~  151 (350)
T cd00609          75 LLRALLNPGDEVLVP--DPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNP-NNPTGAVLSE  151 (350)
T ss_pred             HHHHHCCCCCEEEEE--CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCC-CCCCCCCCCH
T ss_conf             999980898989994--7986306999998299412556560038676689999856889978985699-4972546337


Q ss_pred             --HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCE---EEEECCHH-HHHHHHCC
Q ss_conf             --9999998401471899712110012560258999997202001011014443222231---68754844-50000013
Q gi|254780604|r  196 --IKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFG---GYIAASEN-LCDFIRSF  269 (401)
Q Consensus       196 --L~~l~~l~~~~~~~LivDEAH~~Gv~G~~G~G~~~~~g~~~~~di~~~TlsKa~g~~G---G~i~g~~~-~~~~l~~~  269 (401)
T Consensus       152 ~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~  230 (350)
T cd00609         152 EELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLD-AYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKL  230 (350)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHCC-CCCEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf             8898999998623862688534122036998889678557-798089991172303794537799998889999999862


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCEEEEEECCHHHHHHHHHH
Q ss_conf             322233344443147889987643201-20168888999987666566449830--378986599996897999999999
Q gi|254780604|r  270 ASGFIFSTSLPPAIASASVTSIQYIKQ-HYDERKKYLERVKQLRHSLENKAIPC--IPNESHIIPIMVGDSHKCTQISNI  346 (401)
Q Consensus       270 ~~~~ifs~~l~p~~~aa~~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~g~~~--~~~~s~Ivpi~~g~~~~~~~~~~~  346 (401)
T Consensus       231 ~~-~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~  307 (350)
T cd00609         231 LP-YTTS-GPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDE-EFLER  307 (350)
T ss_pred             CC-CCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCHH-HHHHH
T ss_conf             42-1467-898799999999986829999999999999999999999857996120799553998989999829-99999


Q ss_pred             HHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             9973790998404888888872189961857999999999999999
Q gi|254780604|r  347 LLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLEN  392 (401)
Q Consensus       347 lL~e~Gi~v~~i~~PtVp~g~~rlRi~l~a~ht~edid~~~~~l~~  392 (401)
T Consensus       308 ~l~~~gv~v~~g~~f~-~~~~~~iRl~~~~--~~~~~~~~~~rl~~  350 (350)
T cd00609         308 LLLEAGVVVRPGSAFG-EGGEGFVRLSFAT--PEEELEEALERLAE  350 (350)
T ss_pred             HHHHCCEEEEECHHHC-CCCCCEEEEEECC--CHHHHHHHHHHHCC
T ss_conf             9997999999245648-8998979999639--89999999998578